UBERON:0001962: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:00, 26 June 2012
| Name: | gut-associated lymphoid tissue | ||
|---|---|---|---|
| Definition: | "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"GALT" RELATED [] "gut associated lymphoid tissue" EXACT [] | ||
| Alt_id: | UBERON:FMA_62820-MA_0000136 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001961(mucosa-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure) |
|---|
Children
| is a: | UBERON:0001735 (tonsillar ring),UBERON:0002372 (tonsil) |
|---|---|
| derives from: | FF:0011473 (mouse Follicle Associated Epithelium sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 10261-104C9
- 10262-104D1 (Follicle Associated Epithelium, pool2)
- 10263-104D2 (Follicle Associated Epithelium, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001962 (gut-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483 | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483 | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483 | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_c13650ef59809a46b1740a1319424483 | p@chr8:23117055..23117056, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483 | p@chr19:38060099..38060102, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483 | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483 | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_c13650ef59809a46b1740a1319424483 | p@chr12:116051009..116051016, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483 | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_c13650ef59809a46b1740a1319424483 | p@chr19:31038353..31038362, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483 | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_c13650ef59809a46b1740a1319424483 | p@chr12:115974938..115974945, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483 | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_c13650ef59809a46b1740a1319424483 | p@chr2:14201203..14201212, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483 | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_c13650ef59809a46b1740a1319424483 | p@chr17:59564142..59564144, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483 | p@chr9:69086930..69086933, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483 | p@chr6:69785263..69785268, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_c13650ef59809a46b1740a1319424483 | p@chr19:38060099..38060102, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_c13650ef59809a46b1740a1319424483 | p1@ENSMUST00000114212 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_c13650ef59809a46b1740a1319424483 | p@chr2:63059909..63059910, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_c13650ef59809a46b1740a1319424483 | p@chr9:69086930..69086933, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_c13650ef59809a46b1740a1319424483 | p@chr12:115979100..115979103, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_c13650ef59809a46b1740a1319424483 | p@chr6:69785263..69785268, - |
| 1.68e-58 | FFCP PHASE1:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr1:40599829..40599836, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr11:42881914..42881920, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr8:25523566..25523573, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr2:45535559..45535562, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr6:143591339..143591345, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr1:40599829..40599836,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr1:40599829..40599836, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr12:115366227..115366256, - |
| 1.68e-58 | FFCP PHASE2:Mm9::chr6:143591339..143591345,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr6:143591339..143591345, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr16:15705318..15705342, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr6:28646564..28646565, - |
| 1.68e-58 | FFCP PHASE1:Mm9::chr8:25523566..25523573,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr8:25523566..25523573, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr12:115366227..115366256,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr12:115366227..115366256, - |
| 1.68e-58 | FFCP PHASE2:Mm9::chr6:28646564..28646565,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr6:28646564..28646565, - |
| 1.68e-58 | FFCP PHASE2:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr19:32143349..32143352, - |
| 1.68e-58 | FFCP PHASE1:Mm9::chr19:32143349..32143352,-#_05c5f8da60ffa7f44123d4a80c842124 | p@chr19:32143349..32143352, - |
| 1.68e-58 | FFCP PHASE1:Mm9::chr2:45535559..45535562,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr2:45535559..45535562, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr16:15705318..15705342,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr16:15705318..15705342, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr11:42881914..42881920,+#_05c5f8da60ffa7f44123d4a80c842124 | p@chr11:42881914..42881920, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641 | p@chr2:21228521..21228523, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:21228521..21228523,+#_48ca9507b75c028b8615f9f63970b641 | p@chr2:21228521..21228523, + |
| 6.41e-58 | FFCP PHASE2:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr19:44484947..44484956, - |
| 6.41e-58 | FFCP PHASE1:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr14:11955268..11955270, + |
| 6.41e-58 | FFCP PHASE2:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr12:114598121..114598167, + |
| 6.41e-58 | FFCP PHASE2:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr8:107279610..107279613, + |
| 6.41e-58 | FFCP PHASE2:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr7:151964837..151964841, - |
| 6.41e-58 | FFCP PHASE2:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p1@H1foo |
| 6.41e-58 | FFCP PHASE2:Mm9::chr14:11955268..11955270,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr14:11955268..11955270, + |
| 6.41e-58 | FFCP PHASE1:Mm9::chr8:107279610..107279613,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr8:107279610..107279613, + |
| 6.41e-58 | FFCP PHASE1:Mm9::chr12:114598121..114598167,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr12:114598121..114598167, + |
| 6.41e-58 | FFCP PHASE1:Mm9::chr7:151964837..151964841,-#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr7:151964837..151964841, - |
| 6.41e-58 | FFCP PHASE1:Mm9::chr6:115894954..115894961,+#_ce0b4ae4a2dc895e4f84885797d57ea8 | p1@H1foo |
| 6.41e-58 | FFCP PHASE1:Mm9::chr19:44484947..44484956,-#_ce0b4ae4a2dc895e4f84885797d57ea8 | p@chr19:44484947..44484956, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p1@uc011yvj.1 |
| 1.66e-44 | FFCP PHASE2:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p2@uc007pgn.1 |
| 1.66e-44 | FFCP PHASE2:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr19:32144164..32144171, - |
| 1.66e-44 | FFCP PHASE1:Mm9::chr19:32144164..32144171,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr19:32144164..32144171, - |
| 1.66e-44 | FFCP PHASE1:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr2:172818218..172818220, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr12:117248348..117248352,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p1@uc011yvj.1 |
| 1.66e-44 | FFCP PHASE1:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr6:92256099..92256107, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p1@uc007pgz.1 |
| 1.66e-44 | FFCP PHASE1:Mm9::chr12:114545296..114545316,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p2@uc007pgn.1 |
| 1.66e-44 | FFCP PHASE2:Mm9::chr2:172818218..172818220,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr2:172818218..172818220, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr12:115694343..115694368,-#_fa2e87e05135f7d9b37c3ddb8cb57657 | p1@uc007pgz.1 |
| 1.66e-44 | FFCP PHASE2:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chrX:84015807..84015814, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chrX:84015807..84015814,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chrX:84015807..84015814, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr6:92256099..92256107,+#_fa2e87e05135f7d9b37c3ddb8cb57657 | p@chr6:92256099..92256107, + |
| 2.75e-44 | FFCP PHASE2:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3b | p@chr14:120118559..120118564, + |
| 2.75e-44 | FFCP PHASE1:Mm9::chr14:120118559..120118564,+#_d81fbc1b486d68a8e6373c179aa7bb3b | p@chr14:120118559..120118564, + |
| 4.52e-44 | FFCP PHASE1:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5 | p@chr5:41641845..41641846, + |
| 4.52e-44 | FFCP PHASE2:Mm9::chr5:41641845..41641846,+#_33449f409642c7a55f4cdb7d33d18cd5 | p@chr5:41641845..41641846, + |
| 4.55e-44 | FFCP PHASE2:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3 | p@chr12:114498371..114498382, + |
| 4.55e-44 | FFCP PHASE2:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3 | p@chr12:114546123..114546134, - |
| 4.55e-44 | FFCP PHASE2:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3 | p1@Naip5 |
| 4.55e-44 | FFCP PHASE1:Mm9::chr12:114498371..114498382,+#_54c69a5664f80c5e0fb7627c7be159f3 | p@chr12:114498371..114498382, + |
| 4.55e-44 | FFCP PHASE1:Mm9::chr13:101017287..101017298,-#_54c69a5664f80c5e0fb7627c7be159f3 | p1@Naip5 |
| 4.55e-44 | FFCP PHASE1:Mm9::chr12:114546123..114546134,-#_54c69a5664f80c5e0fb7627c7be159f3 | p@chr12:114546123..114546134, - |
| 7.52e-44 | FFCP PHASE2:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067 | p@chr7:18931147..18931163, - |
| 7.52e-44 | FFCP PHASE2:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067 | p@chr12:114498387..114498408, + |
| 7.52e-44 | FFCP PHASE2:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067 | p@chr12:116073906..116073921, - |
| 7.52e-44 | FFCP PHASE1:Mm9::chr12:114498387..114498408,+#_2e2c54a7c863afc94ca01b1a93377067 | p@chr12:114498387..114498408, + |
| 7.52e-44 | FFCP PHASE1:Mm9::chr7:18931147..18931163,-#_2e2c54a7c863afc94ca01b1a93377067 | p@chr7:18931147..18931163, - |
| 7.52e-44 | FFCP PHASE1:Mm9::chr12:116073906..116073921,-#_2e2c54a7c863afc94ca01b1a93377067 | p@chr12:116073906..116073921, - |
| 1.24e-43 | FFCP PHASE2:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43 | p@chr6:92399181..92399191, + |
| 1.24e-43 | FFCP PHASE1:Mm9::chr6:92399181..92399191,+#_8e0d80dc6fc50c6494d1b11a38c8ad43 | p@chr6:92399181..92399191, + |
| 4.23e-36 | FFCP PHASE2:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr14:120893824..120893825, + |
| 4.23e-36 | FFCP PHASE2:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr17:88262759..88262764, + |
| 4.23e-36 | FFCP PHASE1:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr13:100355619..100355622, - |
| 4.23e-36 | FFCP PHASE1:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7 | p1@Gm10636 |
| 4.23e-36 | FFCP PHASE2:Mm9::chr13:100355619..100355622,-#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr13:100355619..100355622, - |
| 4.23e-36 | FFCP PHASE1:Mm9::chr17:88262759..88262764,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr17:88262759..88262764, + |
| 4.23e-36 | FFCP PHASE1:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr8:24347491..24347492, + |
| 4.23e-36 | FFCP PHASE1:Mm9::chr14:120893824..120893825,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr14:120893824..120893825, + |
| 4.23e-36 | FFCP PHASE2:Mm9::chr8:24347491..24347492,+#_51b7846ff1e73c511e0ad0c3577ca6c7 | p@chr8:24347491..24347492, + |
| 4.23e-36 | FFCP PHASE2:Mm9::chr3:146041906..146041910,-#_51b7846ff1e73c511e0ad0c3577ca6c7 | p1@Gm10636 |
| 9.52e-36 | FFCP PHASE1:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283 | p@chr3:34057648..34057650, + |
| 9.52e-36 | FFCP PHASE2:Mm9::chr3:34057648..34057650,+#_7d3aa55c7a5dc47e3d12af677db9c283 | p@chr3:34057648..34057650, + |
