UBERON:0005562: Difference between revisions
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|def="A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]." [ZFA:0001077] | |def="A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]." [ZFA:0001077] | ||
|xref=EFO:0003622;; | |xref=EFO:0003622;;EHDAA2:0002023;;EHDAA:2969;;EMAPA:17523;;EMAPA:18536;;TAO:0001077;;ZFA:0001077 | ||
|is_a= | |is_a=UBERON:0001048;;UBERON:0003351 | ||
|synonym="thymic primordium" EXACT [Obol:automatic];;"thymic rudiment" EXACT [ZFA:0001077] | |synonym="thymic primordium" EXACT [Obol:automatic];;"thymic rudiment" EXACT [ZFA:0001077] | ||
|comment=Editor notes: we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Development notes: Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. Taxon notes: variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals[ISBN-10:0781714125] | |comment=Editor notes: we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Development notes: Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. Taxon notes: variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals[ISBN-10:0781714125] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
| Name: | thymus primordium | ||
|---|---|---|---|
| Definition: | "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production[ZFA]. [PMID]." [ZFA:0001077] | ||
| Xrefs: |
| ||
| Synonyms: |
"thymic primordium" EXACT [Obol:automatic] "thymic rudiment" EXACT [ZFA:0001077] | ||
| Comments: | Editor notes: we follow Kardong table 13.1 in having some developmental contribution of pouch 4 in mammals, but this isn't reflected in EHDAA2. Development notes: Consider adding distinct term for mesenchyme (see EHDAA2), to indicate NC constribution. Taxon notes: variability of developmental origin: In fish, thymic primordia are generated by all the pouches except the first. However, in avians the thymus arises from pouches 3 and 4, whereas in humans it is only generated by the third pouch[PMID:16313389] The thymus arises from the second pouch in frogs, 2-6 in cartilaginous fish, 2-3 in reptiles, 3 or 4 in bony fish, birds and mammals. The final number is variable - 5 paired organs in sharks, 4 in caecilians, 3 in urodeles, 1 in many teleost, anurans and many mammals[ISBN-10:0781714125] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001048(primordium),UBERON:0003351(pharyngeal epithelium) |
|---|
Children
| develops from: | UBERON:0002370 (thymus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005562 (thymus primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-147 | FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_0273faff036d23caa0d105641de9c797 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_0273faff036d23caa0d105641de9c797 | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_f975cfd9f3472c82de4ae00d46b2b00e | p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1 |
| 8.91e-111 | FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_f975cfd9f3472c82de4ae00d46b2b00e | p4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87018900..87018905,+#_7897f2c0d8afffba533695b9bee075be | p@chr2:87018900..87018905, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:58069758..58069762, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_7897f2c0d8afffba533695b9bee075be | p@chr11:36622593..36622605, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_7897f2c0d8afffba533695b9bee075be | p@chr12:123636839..123636885, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_7897f2c0d8afffba533695b9bee075be | p11@CD1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:200500161..200500173, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_7897f2c0d8afffba533695b9bee075be | p17@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_7897f2c0d8afffba533695b9bee075be | p5@ZNF215 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:227771357..227771363,+#_7897f2c0d8afffba533695b9bee075be | p10@RHBDD1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:11486829..11486836, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:233184654..233184661,-#_7897f2c0d8afffba533695b9bee075be | p@chr2:233184654..233184661, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:11486877..11486886, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:115022988..115023001, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:115023005..115023015, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_7897f2c0d8afffba533695b9bee075be | p@chr15:60131355..60131365, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_7897f2c0d8afffba533695b9bee075be | p@chr16:74359040..74359071, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:115023055..115023072, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_7897f2c0d8afffba533695b9bee075be | p@chr10:115023094..115023106, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_7897f2c0d8afffba533695b9bee075be | p4@ENST00000374945 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_7897f2c0d8afffba533695b9bee075be | p@chr12:48227243..48227269, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:155273127..155273136,-#_7897f2c0d8afffba533695b9bee075be | p4@AK093601 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_7897f2c0d8afffba533695b9bee075be | p25@PITPNM2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87018380..87018390,-#_7897f2c0d8afffba533695b9bee075be | p6@CD8A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:34517538..34517551,+#_7897f2c0d8afffba533695b9bee075be | p@chr3:34517538..34517551, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_7897f2c0d8afffba533695b9bee075be | p@chr11:36589389..36589398, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_7897f2c0d8afffba533695b9bee075be | p@chr17:80866179..80866188, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_7897f2c0d8afffba533695b9bee075be | p19@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:56940722..56940731, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:58069384..58069408, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:158226030..158226041, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:35683004..35683015,+#_7897f2c0d8afffba533695b9bee075be | p42@ARPP21 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_7897f2c0d8afffba533695b9bee075be | p15@MDM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:2084380..2084413, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:158170478..158170491, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_7897f2c0d8afffba533695b9bee075be | p@chr12:133414662..133414671, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_7897f2c0d8afffba533695b9bee075be | p@chr20:58830826..58830835, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:233102726..233102734,+#_7897f2c0d8afffba533695b9bee075be | p@chr2:233102726..233102734, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_7897f2c0d8afffba533695b9bee075be | p@chr15:57017749..57017755, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:44035233..44035242,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:44035233..44035242, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_7897f2c0d8afffba533695b9bee075be | p17@APBB1IP |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_7897f2c0d8afffba533695b9bee075be | p@chr20:30272266..30272271, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_7897f2c0d8afffba533695b9bee075be | p@chr20:58830799..58830808, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_7897f2c0d8afffba533695b9bee075be | p@chr18:13437980..13437986, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_7897f2c0d8afffba533695b9bee075be | p@chr12:47205180..47205187, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:87017428..87017437,+#_7897f2c0d8afffba533695b9bee075be | p@chr2:87017428..87017437, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:57846504..57846542,+#_7897f2c0d8afffba533695b9bee075be | p@chr2:57846504..57846542, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_7897f2c0d8afffba533695b9bee075be | p@chr12:123607146..123607168, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:199026759..199026762, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:158332631..158332640, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_7897f2c0d8afffba533695b9bee075be | p@chr13:99628369..99628374, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:34517741..34517784,+#_7897f2c0d8afffba533695b9bee075be | p@chr3:34517741..34517784, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_7897f2c0d8afffba533695b9bee075be | p@chr12:123559773..123559784, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:158260453..158260459, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_7897f2c0d8afffba533695b9bee075be | p@chr15:60131313..60131324, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_7897f2c0d8afffba533695b9bee075be | p@chr12:123559708..123559720, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:99071828..99071840, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_7897f2c0d8afffba533695b9bee075be | p5@ENST00000443928 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_7897f2c0d8afffba533695b9bee075be | p@chr12:59432175..59432191, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_7897f2c0d8afffba533695b9bee075be | p13@CD1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_7897f2c0d8afffba533695b9bee075be | p@chr15:60131337..60131352, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_7897f2c0d8afffba533695b9bee075be | p1@ENST00000555187 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:56940732..56940741, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_7897f2c0d8afffba533695b9bee075be | p4@uc001wec.2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:19007717..19007728,+#_7897f2c0d8afffba533695b9bee075be | p@chr3:19007717..19007728, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_7897f2c0d8afffba533695b9bee075be | p@chr13:99628347..99628352, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:57926329..57926337,-#_7897f2c0d8afffba533695b9bee075be | p@chr2:57926329..57926337, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:35682974..35682982,+#_7897f2c0d8afffba533695b9bee075be | p45@ARPP21 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:44035057..44035068, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:242080265..242080277,-#_7897f2c0d8afffba533695b9bee075be | p20@PASK |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_7897f2c0d8afffba533695b9bee075be | p@chr17:4090402..4090406, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_7897f2c0d8afffba533695b9bee075be | p@chr15:58920068..58920073, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:227771044..227771054,+#_7897f2c0d8afffba533695b9bee075be | p9@RHBDD1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_7897f2c0d8afffba533695b9bee075be | p@chr12:123560793..123560802, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_7897f2c0d8afffba533695b9bee075be | p@chr13:99628323..99628332, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_7897f2c0d8afffba533695b9bee075be | p24@PITPNM2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_7897f2c0d8afffba533695b9bee075be | p13@POLE |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:55776022..55776029, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_7897f2c0d8afffba533695b9bee075be | p@chr12:123627753..123627760, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_7897f2c0d8afffba533695b9bee075be | p2@ENST00000374945 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_7897f2c0d8afffba533695b9bee075be | p@chr2:162762361..162762364, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_7897f2c0d8afffba533695b9bee075be | p@chr20:58830811..58830825, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:58069582..58069594, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_7897f2c0d8afffba533695b9bee075be | p6@C10orf27 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:158301280..158301298, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_7897f2c0d8afffba533695b9bee075be | p@chr20:58833004..58833011, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_7897f2c0d8afffba533695b9bee075be | p@chr13:99628388..99628399, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_7897f2c0d8afffba533695b9bee075be | p@chr16:49633750..49633778, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_7897f2c0d8afffba533695b9bee075be | p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:194245598..194245600, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_7897f2c0d8afffba533695b9bee075be | p4@ENST00000443928 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_7897f2c0d8afffba533695b9bee075be | p@chr15:58069597..58069604, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:158303678..158303720, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_7897f2c0d8afffba533695b9bee075be | p@chr1:55776031..55776038, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_7897f2c0d8afffba533695b9bee075be | p@chr19:28877072..28877084, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_7897f2c0d8afffba533695b9bee075be | p@chr1:32314477..32314482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_7897f2c0d8afffba533695b9bee075be | p1@AB527792 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
