CL:0000056: Difference between revisions
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|id=CL:0000056 | |id=CL:0000056 | ||
|name=myoblast | |name=myoblast | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="A precursor cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [GOC:tfm, MESH:A.11.635] | |def="A precursor cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [GOC:tfm, MESH:A.11.635] | ||
|xref=BTO:0000222;;FBbt:00005083;;FMA:70335 | |xref=BTO:0000222;;FBbt:00005083;;FMA:70335 | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:24, 26 June 2012
| Name: | myoblast | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "A precursor cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [GOC:tfm, MESH:A.11.635] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000680(muscle precursor cell),CL:0002321(embryonic cell) |
|---|
Children
| is a: | CL:0000514 (smooth muscle myoblast),CL:0000515 (skeletal muscle myoblast),CL:0010021 (cardiac myoblast) |
|---|---|
| derives from: | FF:0200006 (myoblast differentiation to myotubes, control sample) |
| develops from: | CL:0000187 (muscle cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11241-116D8 (Myoblast, donor1)
- 11322-117D8 (Myoblast, donor2)
- 11398-118D3 (Myoblast, donor3)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
- 13473-144I8 (Myoblast differentiation to myotubes)
- 13474-144I9 (Myoblast differentiation to myotubes)
- 13475-145A1 (Myoblast differentiation to myotubes)
... further results Mouse (Mus musculus)
- 11241-116D8 (Myoblast, donor1)
- 11322-117D8 (Myoblast, donor2)
- 11398-118D3 (Myoblast, donor3)
- 13469-144I4 (Myoblast differentiation to myotubes)
- 13470-144I5 (Myoblast differentiation to myotubes)
- 13471-144I6 (Myoblast differentiation to myotubes)
- 13472-144I7 (Myoblast differentiation to myotubes)
- 13473-144I8 (Myoblast differentiation to myotubes)
- 13474-144I9 (Myoblast differentiation to myotubes)
- 13475-145A1 (Myoblast differentiation to myotubes)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000056 (myoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_1b553f5a6cab995fe458b828022c9081 | p@chrX:160838683..160838694, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_1b553f5a6cab995fe458b828022c9081 | p@chrX:160838683..160838694, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_2d78290a5e1a113d37a594f085710f51 | p@chr12:105433069..105433075, - |
| 1.01e-74 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_2d78290a5e1a113d37a594f085710f51 | p@chrX:65748600..65748616, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_2d78290a5e1a113d37a594f085710f51 | p@chrX:65748600..65748616, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_2d78290a5e1a113d37a594f085710f51 | p@chr12:105433069..105433075, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_6c5ce68f9b418856c19ba88914585f28 | p@chrX:160838787..160838800, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_6c5ce68f9b418856c19ba88914585f28 | p@chrX:160838787..160838800, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_bf6a1e0f4516d77ac76161dd4e62c4d2 | p@chr11:81849982..81850000, + |
| 1.74e-65 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_bf6a1e0f4516d77ac76161dd4e62c4d2 | p@chr11:81849982..81850000, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_0957f4aeb3cf3048588e9dadce31417b | p@chr17:14813242..14813246, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_0957f4aeb3cf3048588e9dadce31417b | p@chr17:14813242..14813246, - |
| 1.36e-58 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_821b8fc91ce963f0fd201a80827381d7 | p4@Gpr39 |
| 1.36e-58 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_821b8fc91ce963f0fd201a80827381d7 | p4@Gpr39 |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160823859..160823870, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160840025..160840037, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160840048..160840057, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160823859..160823870, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160840025..160840037, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_b52274183f485c997bcbd13b404f722d | p@chrX:160840048..160840057, + |
| 1.02e-52 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_f761cabfc93edb998e1070fbdf605b10 | p11@Fam198b |
| 1.02e-52 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_f761cabfc93edb998e1070fbdf605b10 | p11@Fam198b |
| 1.99e-52 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_208110720a360481303dee413518b068 | p@chr1:127574253..127574264, + |
| 1.99e-52 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_208110720a360481303dee413518b068 | p@chr1:127574253..127574264, + |
| 3.23e-52 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_6c7c7ec89cc3482ee5c575c7f0764d46 | p7@Gpr39 |
| 3.23e-52 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_6c7c7ec89cc3482ee5c575c7f0764d46 | p7@Gpr39 |
| 4.11e-52 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_9ca7700906380bbb88f7034003589004 | p11@Gpr39 |
| 4.11e-52 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_9ca7700906380bbb88f7034003589004 | p11@Gpr39 |
| 5.23e-52 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_102728f7f568ce7923ff3ae847f89c5b | p@chrX:160839768..160839780, + |
| 5.23e-52 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_102728f7f568ce7923ff3ae847f89c5b | p@chrX:160839768..160839780, + |
| 1.37e-51 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_f2376b533e712f2eec0b1b78af718919 | p8@Gpr39 |
| 1.37e-51 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_f2376b533e712f2eec0b1b78af718919 | p8@Gpr39 |
| 9.51e-51 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_bbb713496604aa3cf2515e62fe70de2a | p@chr6:53359400..53359406, + |
| 9.51e-51 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_bbb713496604aa3cf2515e62fe70de2a | p@chr6:53359400..53359406, + |
| 3.73e-48 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_cdddf51187478a37bb83892771e61d3e | p@chr7:96658543..96658553, - |
| 3.73e-48 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_cdddf51187478a37bb83892771e61d3e | p@chr7:96658543..96658553, - |
| 6.34e-47 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6156ad609306a38c578c76e13cc9edb4 | p@chr7:91081998..91082010, - |
| 6.34e-47 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_6156ad609306a38c578c76e13cc9edb4 | p2@Il6 |
| 6.34e-47 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6156ad609306a38c578c76e13cc9edb4 | p@chr7:91081998..91082010, - |
| 6.34e-47 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_6156ad609306a38c578c76e13cc9edb4 | p2@Il6 |
| 7.16e-47 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_947b1ad8540703221dff79e2e822b70d | p@chr18:52678391..52678395, - |
| 7.16e-47 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_947b1ad8540703221dff79e2e822b70d | p@chr18:52678391..52678395, - |
| 8.31e-47 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_08ed48b566ad52df53e820fc20e1a846 | p@chr10:67598037..67598049, - |
| 8.31e-47 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_08ed48b566ad52df53e820fc20e1a846 | p@chr10:67598037..67598049, - |
| 1.86e-46 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_70bca09fa78bb76c86171b0d314668a7 | p@chr2:65009852..65009866, - |
| 1.86e-46 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_70bca09fa78bb76c86171b0d314668a7 | p@chr2:65009852..65009866, - |
| 5.11e-46 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_ddb61e06a1ad0619297828dad423d390 | p@chr6:91222095..91222107, + |
| 5.11e-46 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_ddb61e06a1ad0619297828dad423d390 | p@chr6:91222095..91222107, + |
| 7.81e-46 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_bb5855e1253fee97027bbf0ce48790a6 | p9@Kctd10 |
| 7.81e-46 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_bb5855e1253fee97027bbf0ce48790a6 | p9@Kctd10 |
| 9.65e-46 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_fed7dd15682813705240c515b4aee523 | p6@Gpr39 |
| 9.65e-46 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_fed7dd15682813705240c515b4aee523 | p6@Gpr39 |
| 1.69e-44 | FFCP PHASE1:Mm9::chrX:70740923..70740934,+#_6c3a337018e251459da45d8d66efe50a | p@chrX:70740923..70740934, + |
| 1.69e-44 | FFCP PHASE2:Mm9::chrX:70740923..70740934,+#_6c3a337018e251459da45d8d66efe50a | p@chrX:70740923..70740934, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr8:69228447..69228492, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p5@Adamts2 |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160829660..160829667,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p14@Figf |
| 5.38e-44 | FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr7:106471695..106471701, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr8:69228447..69228492, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p5@Adamts2 |
| 5.38e-44 | FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p3@E030003E18Rik |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160839338..160839364,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chrX:160839338..160839364, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:87574327..87574332, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:14827154..14827169, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chrX:160839744..160839754, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:14802633..14802637, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr9:102766842..102766853, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160829660..160829667,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p14@Figf |
| 5.38e-44 | FFCP PHASE2:Mm9::chr16:85900926..85900936,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p9@Adamts5 |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:14827154..14827169, - |
| 5.38e-44 | FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr9:56096674..56096680, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr9:102766842..102766853, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr2:112043522..112043530, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:14802633..14802637, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr7:106471695..106471701, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chrX:160839744..160839754, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr17:87574327..87574332, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr16:85900926..85900936,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p9@Adamts5 |
| 5.38e-44 | FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p3@E030003E18Rik |
| 5.38e-44 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr2:178190171..178190178, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr2:178190171..178190178, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chrX:160839338..160839364,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chrX:160839338..160839364, + |
| 5.38e-44 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr2:112043522..112043530, - |
| 5.38e-44 | FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_e1aa2281cdb5bb119dbfb7673efd7915 | p@chr9:56096674..56096680, + |
| 2.46e-41 | FFCP PHASE1:Mm9::chrX:160832435..160832462,+#_9e3cde6795faa50bcde8d0ff6b09a656 | p@chrX:160832435..160832462, + |
| 2.46e-41 | FFCP PHASE1:Mm9::chrX:160839194..160839217,+#_9e3cde6795faa50bcde8d0ff6b09a656 | p@chrX:160839194..160839217, + |
| 2.46e-41 | FFCP PHASE2:Mm9::chrX:160832435..160832462,+#_9e3cde6795faa50bcde8d0ff6b09a656 | p@chrX:160832435..160832462, + |
| 2.46e-41 | FFCP PHASE2:Mm9::chrX:160839194..160839217,+#_9e3cde6795faa50bcde8d0ff6b09a656 | p@chrX:160839194..160839217, + |
| 4.98e-41 | FFCP PHASE2:Mm9::chr6:91220024..91220048,+#_703febdc5bedb8d4bc416881c5c7a699 | p@chr6:91220024..91220048, + |
| 4.98e-41 | FFCP PHASE1:Mm9::chr6:91220024..91220048,+#_703febdc5bedb8d4bc416881c5c7a699 | p@chr6:91220024..91220048, + |
| 3.93e-40 | FFCP PHASE2:Mm9::chr9:102622418..102622429,+#_000394459f091a9641616d1a69e3d674 | p10@Amotl2 |
| 3.93e-40 | FFCP PHASE1:Mm9::chr9:102622418..102622429,+#_000394459f091a9641616d1a69e3d674 | p10@Amotl2 |
| 4.96e-40 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_5a059a1e9a163c64d21f51bd4ea79e6f | p8@ARHGAP22 |
| 4.96e-40 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_5a059a1e9a163c64d21f51bd4ea79e6f | p8@ARHGAP22 |
| 7.49e-40 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_1d32d5e7218b9d754b86ecc8b171bc72 | p2@LRRC17 |
| 7.49e-40 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_1d32d5e7218b9d754b86ecc8b171bc72 | p2@LRRC17 |
| 1.92e-39 | FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_14bda5dc83f52923ea22b8c07a58115c | p10@Gpr39 |
| 1.92e-39 | FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_14bda5dc83f52923ea22b8c07a58115c | p10@Gpr39 |
| 3.01e-39 | FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_3e2af93e101f15a84a62080c9904c5e9 | p@chrX:160839663..160839673, + |
| 3.01e-39 | FFCP PHASE1:Mm9::chr10:96946041..96946050,+#_3e2af93e101f15a84a62080c9904c5e9 | p@chr10:96946041..96946050, + |
