CL:0000076: Difference between revisions
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Revision as of 17:24, 26 June 2012
| Name: | squamous epithelial cell |
|---|---|
| Namespace: | cell |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell) |
|---|
Children
| is a: | CL:0000071 (blood vessel endothelial cell),CL:0000077 (mesothelial cell),CL:0000240 (stratified squamous epithelial cell),CL:0000575 (corneal epithelial cell) |
|---|---|
| derives from: | FF:0102024 (squamous cell carcinoma cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
... further results Mouse (Mus musculus)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000076 (squamous epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.01e-41 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_0ed4a3c11d68531ab3c730242386966d | p@chr18:33046982..33046991, - |
| 4.01e-41 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_0ed4a3c11d68531ab3c730242386966d | p@chr18:33046982..33046991, - |
| 7.09e-34 | FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_21c9d8faeb544156c0acf9c3d540b5f7 | p12@PARP12 |
| 7.09e-34 | FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_21c9d8faeb544156c0acf9c3d540b5f7 | p12@PARP12 |
| 9.9e-34 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_f7d3f6d1aaed2da2f1a7610cd6caf578 | p1@MIR216A |
| 9.9e-34 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_f7d3f6d1aaed2da2f1a7610cd6caf578 | p1@MIR216A |
| 6.61e-33 | FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_1f80586e1ef999f3c0c6b65cd342e5ae | p@chr6:78171774..78171792, + |
| 6.61e-33 | FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_1f80586e1ef999f3c0c6b65cd342e5ae | p@chr6:78171774..78171792, + |
| 1.58e-32 | FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_fb04eb88c2f920e0333da37d7ebc4935 | p@chr18:33047157..33047168, - |
| 1.58e-32 | FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_fb04eb88c2f920e0333da37d7ebc4935 | p@chr18:33047157..33047168, - |
| 6.55e-32 | FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_2ac036d005a688273a47f675e89a1d9c | p5@PARP12 |
| 6.55e-32 | FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_2ac036d005a688273a47f675e89a1d9c | p5@PARP12 |
| 9.29e-32 | FFCP PHASE2:Hg19::chr4:145566874..145566889,+#_2c18878af97a00b3739503da5db0320b | p15@HHIP |
| 9.29e-32 | FFCP PHASE1:Hg19::chr4:145566874..145566889,+#_2c18878af97a00b3739503da5db0320b | p15@HHIP |
| 1.88e-31 | FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_51c9b7cb826be7d7e7ae4dc83fef876d | p12@KSR2 |
| 1.88e-31 | FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_51c9b7cb826be7d7e7ae4dc83fef876d | p12@KSR2 |
| 2.75e-31 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_9603a88e17fc5739dee25f2a94fa40fa | p@chr3:43538305..43538325, - |
| 2.75e-31 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_9603a88e17fc5739dee25f2a94fa40fa | p@chr3:43538305..43538325, - |
| 6.38e-30 | FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_877b0fb89ec378bb607eb84a4f4ee232 | p7@WDFY4 |
| 6.38e-30 | FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_877b0fb89ec378bb607eb84a4f4ee232 | p7@WDFY4 |
| 1.0e-29 | FFCP PHASE2:Hg19::chr2:36796813..36796868,-#_b50bdd8d9695786eadb876f4902559f7 | p@chr2:36796813..36796868, - |
| 1.0e-29 | FFCP PHASE1:Hg19::chr2:36796813..36796868,-#_b50bdd8d9695786eadb876f4902559f7 | p@chr2:36796813..36796868, - |
| 1.02e-29 | FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_49b93ce8a0ee42a61ec0cc5232925282 | p@chrX:71299684..71299699, + |
| 1.02e-29 | FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_49b93ce8a0ee42a61ec0cc5232925282 | p@chrX:71299684..71299699, + |
| 3.22e-29 | FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_0d041820adea83f09ddf3ecfe51a0960 | p6@WDFY4 |
| 3.22e-29 | FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_0d041820adea83f09ddf3ecfe51a0960 | p6@WDFY4 |
| 8.8e-29 | FFCP PHASE2:Hg19::chr12:7585997..7586021,-#_df5a511c5b99c4622cfec5295cc84239 | p@chr12:7585997..7586021, - |
| 8.8e-29 | FFCP PHASE1:Hg19::chr12:7585997..7586021,-#_df5a511c5b99c4622cfec5295cc84239 | p@chr12:7585997..7586021, - |
| 4.75e-28 | FFCP PHASE2:Hg19::chr12:52080755..52080778,+#_da53d6c497354c30ef8c80f812959a87 | p@chr12:52080755..52080778, + |
| 4.75e-28 | FFCP PHASE1:Hg19::chr12:52080755..52080778,+#_da53d6c497354c30ef8c80f812959a87 | p@chr12:52080755..52080778, + |
| 5.89e-28 | FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_0c364aa7c4f5f5d73cd227ab2d0364bf | p2@BMX |
| 5.89e-28 | FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_0c364aa7c4f5f5d73cd227ab2d0364bf | p2@BMX |
| 8.93e-28 | FFCP PHASE2:Hg19::chr3:58034268..58034295,+#_cc9b39523b734246ed242391c5adc946 | p@chr3:58034268..58034295, + |
| 8.93e-28 | FFCP PHASE1:Hg19::chr3:58034268..58034295,+#_cc9b39523b734246ed242391c5adc946 | p@chr3:58034268..58034295, + |
| 1.03e-27 | FFCP PHASE2:Hg19::chr14:75469820..75469826,+#_ae3c4d484c04d447ab1e0b7f100da36c | p4@EIF2B2 |
| 1.03e-27 | FFCP PHASE1:Hg19::chr14:75469820..75469826,+#_ae3c4d484c04d447ab1e0b7f100da36c | p4@EIF2B2 |
| 1.63e-27 | FFCP PHASE2:Hg19::chr7:150329732..150329739,-#_d58884ce6da3d6afec5c7b1a7563d7a5 | p8@GIMAP6 |
| 1.63e-27 | FFCP PHASE1:Hg19::chr7:150329732..150329739,-#_d58884ce6da3d6afec5c7b1a7563d7a5 | p8@GIMAP6 |
| 1.67e-27 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_563975f4f7926df22e7466727aa1f540 | p@chr6:3753188..3753192, - |
| 1.67e-27 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_563975f4f7926df22e7466727aa1f540 | p@chr6:3753188..3753192, - |
| 1.74e-27 | FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_d92ed2676740ff8e9045a8e6c30fefa5 | p11@MANSC1 |
| 1.74e-27 | FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_d92ed2676740ff8e9045a8e6c30fefa5 | p11@MANSC1 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:148664333..148664338,-#_fbd328bfeddc6a91b3d27e98fc7219b0 | p@chr6:148664333..148664338, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:148664333..148664338,-#_fbd328bfeddc6a91b3d27e98fc7219b0 | p@chr6:148664333..148664338, - |
| 2.66e-27 | FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_97f014acbb120c2e8d63e7b9f116b3f0 | p@chr10:99655692..99655725, - |
| 2.66e-27 | FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_97f014acbb120c2e8d63e7b9f116b3f0 | p@chr10:99655692..99655725, - |
| 3.22e-27 | FFCP PHASE1:Hg19::chr1:6479968..6479986,-#_46fa6aa3df0fc3b97a8e0de4cee72851 | p1@HES2 |
| 3.22e-27 | FFCP PHASE2:Hg19::chr1:6479968..6479986,-#_46fa6aa3df0fc3b97a8e0de4cee72851 | p1@HES2 |
| 4.93e-27 | FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_f8acf7b16fcd3176da153a868ee46c8e | p1@ENST00000513158 |
| 4.93e-27 | FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_f8acf7b16fcd3176da153a868ee46c8e | p1@ENST00000513158 |
| 5.58e-27 | FFCP PHASE1:Hg19::chr15:83953373..83953386,-#_719128b844eb9b27c80be91b440bb79e | p2@BNC1 |
| 5.58e-27 | FFCP PHASE2:Hg19::chr15:83953373..83953386,-#_719128b844eb9b27c80be91b440bb79e | p2@BNC1 |
| 5.61e-27 | FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_4fb42e1a4c5e6ea025f2f7307495589e | p@chr9:139563124..139563129, + |
| 5.61e-27 | FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_4fb42e1a4c5e6ea025f2f7307495589e | p@chr9:139563124..139563129, + |
| 8.05e-27 | FFCP PHASE2:Hg19::chr12:80084018..80084035,-#_322da4dbda8d3e86f555b571a24a4ab3 | p17@PAWR |
| 8.05e-27 | FFCP PHASE1:Hg19::chr12:80084018..80084035,-#_322da4dbda8d3e86f555b571a24a4ab3 | p17@PAWR |
| 1.95e-26 | FFCP PHASE2:Hg19::chr19:38794797..38794810,+#_845ea808f255b47cfc5d42bdf1a95055 | p2@C19orf33 |
| 1.95e-26 | FFCP PHASE1:Hg19::chr19:38794797..38794810,+#_845ea808f255b47cfc5d42bdf1a95055 | p2@C19orf33 |
| 2.17e-26 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_bc1fffa18a848f9e946a25d45d9ad5f2 | p@chr6:78171746..78171769, + |
| 2.17e-26 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_bc1fffa18a848f9e946a25d45d9ad5f2 | p@chr6:78171746..78171769, + |
| 3.65e-26 | FFCP PHASE2:Hg19::chr7:150690812..150690817,+#_845805177440e0cf29a0415a0bf011fd | p10@NOS3 |
| 3.65e-26 | FFCP PHASE1:Hg19::chr7:150690812..150690817,+#_845805177440e0cf29a0415a0bf011fd | p10@NOS3 |
| 4.74e-26 | FFCP PHASE2:Hg19::chr5:176433333..176433349,-#_aabc9b6bbda6e0b45ce5c1775cf22cea | p11@UIMC1 |
| 4.74e-26 | FFCP PHASE1:Hg19::chr5:176433333..176433349,-#_aabc9b6bbda6e0b45ce5c1775cf22cea | p11@UIMC1 |
| 8.11e-26 | FFCP PHASE1:Hg19::chr2:237076069..237076110,+#_c7f735a7f852d3026af7d5d8d7ff93e8 | p1@ENST00000415226, p1@ENST00000483218 |
| 8.11e-26 | FFCP PHASE2:Hg19::chr2:237076069..237076110,+#_c7f735a7f852d3026af7d5d8d7ff93e8 | p1@ENST00000415226, p1@ENST00000483218 |
| 8.2e-26 | FFCP PHASE2:Hg19::chr5:34656634..34656645,+#_bcd7c391f2720e76cb51e5a6b6b171a7 | p15@RAI14 |
| 8.2e-26 | FFCP PHASE1:Hg19::chr5:34656634..34656645,+#_bcd7c391f2720e76cb51e5a6b6b171a7 | p15@RAI14 |
| 1.05e-25 | FFCP PHASE1:Hg19::chr4:79472785..79472796,+#_c335fc4dfe78663ea9dcd5402233dc2f | p3@ANXA3 |
| 1.05e-25 | FFCP PHASE2:Hg19::chr4:79472785..79472796,+#_c335fc4dfe78663ea9dcd5402233dc2f | p3@ANXA3 |
| 1.3e-25 | FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_db378bfc394b48cb1d70b6be1cabb0c4 | p5@CLEC14A |
| 1.3e-25 | FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_db378bfc394b48cb1d70b6be1cabb0c4 | p5@CLEC14A |
| 1.81e-25 | FFCP PHASE1:Hg19::chr13:34727644..34727660,-#_8e9e1ce60b3a6783ce841cfecc0da953 | p@chr13:34727644..34727660, - |
| 1.81e-25 | FFCP PHASE2:Hg19::chr13:34727644..34727660,-#_8e9e1ce60b3a6783ce841cfecc0da953 | p@chr13:34727644..34727660, - |
| 1.89e-25 | FFCP PHASE2:Hg19::chr14:59830398..59830424,+#_8787713b364ac162d31ba17533329fa9 | p@chr14:59830398..59830424, + |
| 1.89e-25 | FFCP PHASE1:Hg19::chr14:59830398..59830424,+#_8787713b364ac162d31ba17533329fa9 | p@chr14:59830398..59830424, + |
| 3.02e-25 | FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_6b1de2495f8f8caffbdad2c6b3189064 | p5@ICAM2 |
| 3.02e-25 | FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_6b1de2495f8f8caffbdad2c6b3189064 | p5@ICAM2 |
| 3.33e-25 | FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_106ff8f439e2e68230245f0532389b38 | p@chr1:22264210..22264241, + |
| 3.33e-25 | FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_106ff8f439e2e68230245f0532389b38 | p@chr1:22264210..22264241, + |
| 4.29e-25 | FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_2df8e7e4db5c5b50ab0e56e7a2643c23 | p@chr6:11607864..11607875, + |
| 4.29e-25 | FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_2df8e7e4db5c5b50ab0e56e7a2643c23 | p@chr6:11607864..11607875, + |
| 5.52e-25 | FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_54dfbb7bee2eda40a5b4936af4cfeb28 | p@chr11:124761247..124761258, - |
| 5.52e-25 | FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_54dfbb7bee2eda40a5b4936af4cfeb28 | p@chr11:124761247..124761258, - |
| 6.31e-25 | FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_c6e6f33d3550cbbf8598d56841c42aaf | p@chr12:105863705..105863718, + |
| 6.31e-25 | FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_c6e6f33d3550cbbf8598d56841c42aaf | p@chr12:105863705..105863718, + |
| 1.14e-24 | FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_42721c056c76554b37d35754d8a2f6cc | p6@CLEC14A |
| 1.14e-24 | FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_42721c056c76554b37d35754d8a2f6cc | p6@CLEC14A |
| 1.17e-24 | FFCP PHASE2:Hg19::chr9:139541134..139541139,+#_bc81f65ec8986fb32300dd8cb0cd8044 | p@chr9:139541134..139541139, + |
| 1.17e-24 | FFCP PHASE1:Hg19::chr9:139541134..139541139,+#_bc81f65ec8986fb32300dd8cb0cd8044 | p@chr9:139541134..139541139, + |
| 1.26e-24 | FFCP PHASE1:Hg19::chr4:85791667..85791699,-#_d2c2751de3411d62611dc2a982d901bd | p@chr4:85791667..85791699, - |
| 1.26e-24 | FFCP PHASE2:Hg19::chr4:85791667..85791699,-#_d2c2751de3411d62611dc2a982d901bd | p@chr4:85791667..85791699, - |
| 1.58e-24 | FFCP PHASE2:Hg19::chr3:148599249..148599271,+#_e164af0010c15f8c119e11b4390307da | p2@CPA3 |
| 1.58e-24 | FFCP PHASE1:Hg19::chr3:148599249..148599271,+#_e164af0010c15f8c119e11b4390307da | p2@CPA3 |
| 2.44e-24 | FFCP PHASE2:Hg19::chr9:139543445..139543462,+#_bee8f1ee1f75580ecd6fbf1c1444478e | p@chr9:139543445..139543462, + |
| 2.44e-24 | FFCP PHASE1:Hg19::chr9:139543445..139543462,+#_bee8f1ee1f75580ecd6fbf1c1444478e | p@chr9:139543445..139543462, + |
| 3.04e-24 | FFCP PHASE2:Hg19::chr12:96830523..96830532,+#_2dd2e9ea65514429f8e1249171cdc194 | p@chr12:96830523..96830532, + |
| 3.04e-24 | FFCP PHASE1:Hg19::chr12:96830523..96830532,+#_2dd2e9ea65514429f8e1249171cdc194 | p@chr12:96830523..96830532, + |
| 4.4e-24 | FFCP PHASE1:Hg19::chr20:50721803..50721857,-#_472ce9d5f9f4a873e546b50f9da9b96a | p2@ZFP64 |
| 4.4e-24 | FFCP PHASE2:Hg19::chr20:50721803..50721857,-#_472ce9d5f9f4a873e546b50f9da9b96a | p2@ZFP64 |
