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{{DOID
{{DOID
|id=DOID:4549
|alt_id=
|name=extraosseous chondrosarcoma
|namespace=disease_ontology
|def=
|xref=UMLS_CUI:C0855048
|is_a=DOID:3371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:4549
|is_a=DOID:3371
|is_obsolete=
|located_in=
|located_in=
|name=extraosseous chondrosarcoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=UMLS_CUI:C0855048
}}
}}

Revision as of 10:35, 12 September 2014

Name:extraosseous chondrosarcoma
Namespace:disease_ontology
Xrefs:
links:
UMLS_CUI:C0855048

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3371(chondrosarcoma)



Children


is a:DOID:6496 (extraskeletal myxoid chondrosarcoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Mouse (Mus musculus)

  • 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:4549 (extraosseous chondrosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_1147d109bbe9988c7b81794ecc261253p5@GALR1
5.42e-195FFCP PHASE2:Hg19::chr21:17357327..17357329,-#_1147d109bbe9988c7b81794ecc261253p@chr21:17357327..17357329, -
5.42e-195FFCP PHASE1:Hg19::chr6:152792957..152792960,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152792957..152792960, -
5.42e-195FFCP PHASE1:Hg19::chr9:12848028..12848033,-#_1147d109bbe9988c7b81794ecc261253p@chr9:12848028..12848033, -
5.42e-195FFCP PHASE1:Hg19::chr3:177555440..177555446,-#_1147d109bbe9988c7b81794ecc261253p@chr3:177555440..177555446, -
5.42e-195FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_1147d109bbe9988c7b81794ecc261253p7@LHX9
5.42e-195FFCP PHASE1:Hg19::chr19:56047661..56047668,-#_1147d109bbe9988c7b81794ecc261253p4@SBK2
5.42e-195FFCP PHASE1:Hg19::chr18:22251696..22251702,-#_1147d109bbe9988c7b81794ecc261253p@chr18:22251696..22251702, -
5.42e-195FFCP PHASE1:Hg19::chr12:80818234..80818245,+#_1147d109bbe9988c7b81794ecc261253p@chr12:80818234..80818245, +
5.42e-195FFCP PHASE2:Hg19::chr8:107074457..107074458,+#_1147d109bbe9988c7b81794ecc261253p@chr8:107074457..107074458, +
5.42e-195FFCP PHASE2:Hg19::chr3:1577586..1577600,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577586..1577600, -
5.42e-195FFCP PHASE1:Hg19::chr10:63700076..63700086,+#_1147d109bbe9988c7b81794ecc261253p@chr10:63700076..63700086, +
5.42e-195FFCP PHASE2:Hg19::chr14:88322648..88322655,-#_1147d109bbe9988c7b81794ecc261253p@chr14:88322648..88322655, -
5.42e-195FFCP PHASE1:Hg19::chr6:152590052..152590068,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152590052..152590068, -
5.42e-195FFCP PHASE1:Hg19::chr2:175614951..175614956,-#_1147d109bbe9988c7b81794ecc261253p@chr2:175614951..175614956, -
5.42e-195FFCP PHASE2:Hg19::chr6:150735319..150735330,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150735319..150735330, +
5.42e-195FFCP PHASE1:Hg19::chr3:1577559..1577577,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577559..1577577, -
5.42e-195FFCP PHASE2:Hg19::chr3:30570717..30570723,-#_1147d109bbe9988c7b81794ecc261253p@chr3:30570717..30570723, -
5.42e-195FFCP PHASE2:Hg19::chr11:30252646..30252648,+#_1147d109bbe9988c7b81794ecc261253p@chr11:30252646..30252648, +
5.42e-195FFCP PHASE1:Hg19::chr2:206927691..206927699,-#_1147d109bbe9988c7b81794ecc261253p@chr2:206927691..206927699, -
5.42e-195FFCP PHASE1:Hg19::chr12:71031325..71031332,-#_1147d109bbe9988c7b81794ecc261253p19@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_1147d109bbe9988c7b81794ecc261253p@chr4:139817600..139817609, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141993..2142006,+#_1147d109bbe9988c7b81794ecc261253p6@CNTN4
5.42e-195FFCP PHASE1:Hg19::chr1:154942376..154942386,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942376..154942386, -
5.42e-195FFCP PHASE1:Hg19::chr14:88322648..88322655,-#_1147d109bbe9988c7b81794ecc261253p@chr14:88322648..88322655, -
5.42e-195FFCP PHASE2:Hg19::chr7:18439510..18439521,+#_1147d109bbe9988c7b81794ecc261253p@chr7:18439510..18439521, +
5.42e-195FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_1147d109bbe9988c7b81794ecc261253p@chr5:33361438..33361453, -
5.42e-195FFCP PHASE1:Hg19::chr2:190023542..190023552,-#_1147d109bbe9988c7b81794ecc261253p@chr2:190023542..190023552, -
5.42e-195FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152592460..152592465, -
5.42e-195FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_1147d109bbe9988c7b81794ecc261253p@chr3:2139856..2139863, +
5.42e-195FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_1147d109bbe9988c7b81794ecc261253p@chr12:79920639..79920642, -
5.42e-195FFCP PHASE1:Hg19::chr3:2141775..2141783,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141775..2141783, -
5.42e-195FFCP PHASE1:Hg19::chr6:152589245..152589256,-#_1147d109bbe9988c7b81794ecc261253p53@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr12:46884845..46884851,+#_1147d109bbe9988c7b81794ecc261253p@chr12:46884845..46884851, +
5.42e-195FFCP PHASE2:Hg19::chr2:27806224..27806236,+#_1147d109bbe9988c7b81794ecc261253p5@ZNF512
5.42e-195FFCP PHASE2:Hg19::chr6:152589315..152589320,-#_1147d109bbe9988c7b81794ecc261253p72@SYNE1
5.42e-195FFCP PHASE2:Hg19::chr3:2141813..2141822,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141813..2141822, -
5.42e-195FFCP PHASE2:Hg19::chr12:70351971..70351975,+#_1147d109bbe9988c7b81794ecc261253p@chr12:70351971..70351975, +
5.42e-195FFCP PHASE1:Hg19::chr1:197890538..197890548,+#_1147d109bbe9988c7b81794ecc261253p@chr1:197890538..197890548, +
5.42e-195FFCP PHASE1:Hg19::chr6:150740842..150740854,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150740842..150740854, +
5.42e-195FFCP PHASE2:Hg19::chr10:63700043..63700053,+#_1147d109bbe9988c7b81794ecc261253p@chr10:63700043..63700053, +
5.42e-195FFCP PHASE1:Hg19::chrX:135338397..135338402,-#_1147d109bbe9988c7b81794ecc261253p@chrX:135338397..135338402, -
5.42e-195FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_1147d109bbe9988c7b81794ecc261253p@chr9:79634044..79634053, -
5.42e-195FFCP PHASE2:Hg19::chr1:145473286..145473295,+#_1147d109bbe9988c7b81794ecc261253p5@AB464458
5.42e-195FFCP PHASE1:Hg19::chr11:30257128..30257133,-#_1147d109bbe9988c7b81794ecc261253p@chr11:30257128..30257133, -
5.42e-195FFCP PHASE1:Hg19::chr3:163194047..163194081,-#_1147d109bbe9988c7b81794ecc261253p@chr3:163194047..163194081, -
5.42e-195FFCP PHASE2:Hg19::chr16:52581957..52581960,-#_1147d109bbe9988c7b81794ecc261253p8@TOX3
5.42e-195FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_1147d109bbe9988c7b81794ecc261253p@chr6:142987388..142987398, -
5.42e-195FFCP PHASE2:Hg19::chr1:192408018..192408032,-#_1147d109bbe9988c7b81794ecc261253p@chr1:192408018..192408032, -
5.42e-195FFCP PHASE1:Hg19::chr16:52581957..52581960,-#_1147d109bbe9988c7b81794ecc261253p8@TOX3
5.42e-195FFCP PHASE2:Hg19::chr12:80818259..80818266,+#_1147d109bbe9988c7b81794ecc261253p@chr12:80818259..80818266, +
5.42e-195FFCP PHASE2:Hg19::chr1:198595896..198595910,+#_1147d109bbe9988c7b81794ecc261253p@chr1:198595896..198595910, +
5.42e-195FFCP PHASE2:Hg19::chr1:112916133..112916138,-#_1147d109bbe9988c7b81794ecc261253p@chr1:112916133..112916138, -
5.42e-195FFCP PHASE2:Hg19::chr13:23368370..23368374,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23368370..23368374, +
5.42e-195FFCP PHASE1:Hg19::chr3:99680705..99680734,+#_1147d109bbe9988c7b81794ecc261253p@chr3:99680705..99680734, +
5.42e-195FFCP PHASE1:Hg19::chr3:157230599..157230604,+#_1147d109bbe9988c7b81794ecc261253p@chr3:157230599..157230604, +
5.42e-195FFCP PHASE2:Hg19::chr11:30105969..30105977,-#_1147d109bbe9988c7b81794ecc261253p1@ENST00000527819
5.42e-195FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_1147d109bbe9988c7b81794ecc261253p@chr4:169935479..169935481, -
5.42e-195FFCP PHASE1:Hg19::chr12:108955070..108955084,-#_1147d109bbe9988c7b81794ecc261253p16@SART3
5.42e-195FFCP PHASE1:Hg19::chr3:2141862..2141887,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141862..2141887, -
5.42e-195FFCP PHASE1:Hg19::chr10:33244066..33244083,-#_1147d109bbe9988c7b81794ecc261253p@chr10:33244066..33244083, -
5.42e-195FFCP PHASE2:Hg19::chr14:88220703..88220709,-#_1147d109bbe9988c7b81794ecc261253p@chr14:88220703..88220709, -
5.42e-195FFCP PHASE2:Hg19::chr10:33244345..33244348,-#_1147d109bbe9988c7b81794ecc261253p@chr10:33244345..33244348, -
5.42e-195FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_1147d109bbe9988c7b81794ecc261253p@chr9:18993581..18993586, -
5.42e-195FFCP PHASE1:Hg19::chr14:88220703..88220709,-#_1147d109bbe9988c7b81794ecc261253p@chr14:88220703..88220709, -
5.42e-195FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_1147d109bbe9988c7b81794ecc261253p16@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr15:95751475..95751482,+#_1147d109bbe9988c7b81794ecc261253p@chr15:95751475..95751482, +
5.42e-195FFCP PHASE1:Hg19::chr12:70351971..70351975,+#_1147d109bbe9988c7b81794ecc261253p@chr12:70351971..70351975, +
5.42e-195FFCP PHASE1:Hg19::chr13:23368370..23368374,+#_1147d109bbe9988c7b81794ecc261253p@chr13:23368370..23368374, +
5.42e-195FFCP PHASE2:Hg19::chr1:154942206..154942211,-#_1147d109bbe9988c7b81794ecc261253p@chr1:154942206..154942211, -
5.42e-195FFCP PHASE2:Hg19::chr12:70636933..70636940,+#_1147d109bbe9988c7b81794ecc261253p28@CNOT2
5.42e-195FFCP PHASE1:Hg19::chr7:94540075..94540082,+#_1147d109bbe9988c7b81794ecc261253p21@PPP1R9A
5.42e-195FFCP PHASE1:Hg19::chr1:198595872..198595878,+#_1147d109bbe9988c7b81794ecc261253p@chr1:198595872..198595878, +
5.42e-195FFCP PHASE2:Hg19::chr12:71031325..71031332,-#_1147d109bbe9988c7b81794ecc261253p19@PTPRB
5.42e-195FFCP PHASE2:Hg19::chr20:36848135..36848142,-#_1147d109bbe9988c7b81794ecc261253p@chr20:36848135..36848142, -
5.42e-195FFCP PHASE1:Hg19::chr1:158989981..158989988,+#_1147d109bbe9988c7b81794ecc261253p@chr1:158989981..158989988, +
5.42e-195FFCP PHASE2:Hg19::chr3:2141746..2141758,-#_1147d109bbe9988c7b81794ecc261253p@chr3:2141746..2141758, -
5.42e-195FFCP PHASE1:Hg19::chr9:13005000..13005036,-#_1147d109bbe9988c7b81794ecc261253p@chr9:13005000..13005036, -
5.42e-195FFCP PHASE1:Hg19::chr19:56047669..56047674,-#_1147d109bbe9988c7b81794ecc261253p7@SBK2
5.42e-195FFCP PHASE1:Hg19::chr15:95751475..95751482,+#_1147d109bbe9988c7b81794ecc261253p@chr15:95751475..95751482, +
5.42e-195FFCP PHASE2:Hg19::chr3:99508248..99508255,-#_1147d109bbe9988c7b81794ecc261253p@chr3:99508248..99508255, -
5.42e-195FFCP PHASE1:Hg19::chr12:46660412..46660420,-#_1147d109bbe9988c7b81794ecc261253p38@SLC38A1
5.42e-195FFCP PHASE1:Hg19::chr12:80818259..80818266,+#_1147d109bbe9988c7b81794ecc261253p@chr12:80818259..80818266, +
5.42e-195FFCP PHASE2:Hg19::chr3:1577628..1577634,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577628..1577634, -
5.42e-195FFCP PHASE2:Hg19::chr1:197873492..197873502,-#_1147d109bbe9988c7b81794ecc261253p@chr1:197873492..197873502, -
5.42e-195FFCP PHASE1:Hg19::chr3:30442082..30442087,-#_1147d109bbe9988c7b81794ecc261253p@chr3:30442082..30442087, -
5.42e-195FFCP PHASE2:Hg19::chr17:46178195..46178202,-#_1147d109bbe9988c7b81794ecc261253p12@CBX1
5.42e-195FFCP PHASE2:Hg19::chr14:88338702..88338713,-#_1147d109bbe9988c7b81794ecc261253p1@ENST00000554305
5.42e-195FFCP PHASE1:Hg19::chrX:135338270..135338275,-#_1147d109bbe9988c7b81794ecc261253p@chrX:135338270..135338275, -
5.42e-195FFCP PHASE1:Hg19::chr6:152590257..152590288,-#_1147d109bbe9988c7b81794ecc261253p@chr6:152590257..152590288, -
5.42e-195FFCP PHASE2:Hg19::chr6:150735340..150735361,+#_1147d109bbe9988c7b81794ecc261253p@chr6:150735340..150735361, +
5.42e-195FFCP PHASE2:Hg19::chr4:72885984..72885997,-#_1147d109bbe9988c7b81794ecc261253p@chr4:72885984..72885997, -
5.42e-195FFCP PHASE2:Hg19::chr3:2140149..2140157,+#_1147d109bbe9988c7b81794ecc261253p25@CNTN4
5.42e-195FFCP PHASE2:Hg19::chr1:228783266..228783269,-#_1147d109bbe9988c7b81794ecc261253p@chr1:228783266..228783269, -
5.42e-195FFCP PHASE2:Hg19::chr13:23733478..23733489,-#_1147d109bbe9988c7b81794ecc261253p@chr13:23733478..23733489, -
5.42e-195FFCP PHASE1:Hg19::chr3:1577586..1577600,-#_1147d109bbe9988c7b81794ecc261253p@chr3:1577586..1577600, -
5.42e-195FFCP PHASE2:Hg19::chr2:74780643..74780673,-#_1147d109bbe9988c7b81794ecc261253p30@LOXL3
5.42e-195FFCP PHASE2:Hg19::chr11:30253410..30253431,+#_1147d109bbe9988c7b81794ecc261253p2@FSHB
5.42e-195FFCP PHASE1:Hg19::chr21:17357327..17357329,-#_1147d109bbe9988c7b81794ecc261253p@chr21:17357327..17357329, -
5.42e-195FFCP PHASE1:Hg19::chr12:71031372..71031377,-#_1147d109bbe9988c7b81794ecc261253p25@PTPRB

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