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|subset=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005171;;UBERON:0008835
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0002107
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
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|preceded_by=
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Revision as of 13:28, 27 June 2012

Name:liver parenchyma
Definition:"the functional units of the liver including the lobules." [MP:0008986]
Xrefs:
links:

AAO:0010405
EHDAA2:0001004
EHDAA:2201
EMAPA:17203
FMA:17540
MA:0000366
SCTID:363535004
VHOG:0000539

XAO:0000454
Synonyms: "hepatic parenchyma" EXACT [FMA:17540]
"hepatic parenchyme" RELATED [VHOG:0000539]
"liver parenchyme" EXACT [XAO:0000454]
"parenchyma of liver" EXACT [FMA:17540]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003223
UBERON:FMA_17540-MA_0000366

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000353(parenchyma),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0005171(hepatic duct),UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0002107(liver)



Children

part of:UBERON:0001171 (portal lobule),UBERON:0004647 (liver lobule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001280 (liver parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.74e-88FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
9.74e-88FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_574b56c06426d590943c5cb24575133dp2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_103e79e5a3c1e504c4a5bd9b992197fap8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_103e79e5a3c1e504c4a5bd9b992197fap8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_103e79e5a3c1e504c4a5bd9b992197fap@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:117419958..117419964, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:114250006..114250039, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_103e79e5a3c1e504c4a5bd9b992197fap4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:96429602..96429605, -
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39297570..39297573, -
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:60279719..60279737, -
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:82207617..82207621, +
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35945332..35945335, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr13:113053257..113053258, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr17:35094068..35094092, -
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_103e79e5a3c1e504c4a5bd9b992197fap@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_103e79e5a3c1e504c4a5bd9b992197fap@chr15:59435855..59435878, -

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