Personal tools

UBERON:0001849: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 15: Line 15:
|subset=organ_slim;;uberon_slim
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0010113
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001846
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:29, 27 June 2012

Name:membranous labyrinth
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0010113(future membranous labyrinth)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_ff6b9d38f6a159b0c39897a75ae91190p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_ff6b9d38f6a159b0c39897a75ae91190p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_ff6b9d38f6a159b0c39897a75ae91190p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_ff6b9d38f6a159b0c39897a75ae91190p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_ff6b9d38f6a159b0c39897a75ae91190p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_ff6b9d38f6a159b0c39897a75ae91190p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_ff6b9d38f6a159b0c39897a75ae91190p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_ff6b9d38f6a159b0c39897a75ae91190p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_ff6b9d38f6a159b0c39897a75ae91190p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_ff6b9d38f6a159b0c39897a75ae91190p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_ff6b9d38f6a159b0c39897a75ae91190p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ff6b9d38f6a159b0c39897a75ae91190p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_ff6b9d38f6a159b0c39897a75ae91190p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_ff6b9d38f6a159b0c39897a75ae91190p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:133802857..133802884, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001849&oldid=1837480"