UBERON:0002240: Difference between revisions
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|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core | |subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003076;;UBERON:0006241 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001017;;UBERON:0001137 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000955;;UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000955;;UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:31, 27 June 2012
| Name: | spinal cord | ||
|---|---|---|---|
| Definition: | "Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord] | ||
| Xrefs: |
| ||
| Synonyms: |
"medulla spinalis" RELATED [BTO:0001279] "medulla spinalis" RELATED LATIN [Wikipedia:Spinal_cord] "spinal cord structure" RELATED [ZFA:0000075] "spinal medulla" RELATED [BTO:0001279] | ||
| Comments: | TODO: add superclass to unify with VNC? | ||
| Alt_id: | UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075 | ||
| Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000489(cavitated compound organ),UBERON:0004121(ectoderm-derived structure),UBERON:0005174(dorsal region element),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0003076(posterior neural tube),UBERON:0006241(future spinal cord) |
| part_of: | UBERON:0001017(central nervous system),UBERON:0001137(dorsum) |
Children
| is a: | FF:10359-105E8 (spinal cord, newborn, donor10223) |
|---|---|
| derives from: | FF:0010056 (human spinal cord - fetal sample),FF:0010159 (human spinal cord - adult sample),FF:0011305 (mouse spinal cord- adult sample) |
| part of: | FF:0000198 (astrocyte of spinal cord),UBERON:0001948 (regional part of spinal cord),UBERON:0002315 (gray matter of spinal cord),CL:0002606 (astrocyte of the spinal cord),UBERON:0016550 (spinal cord column) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
... further results Mouse (Mus musculus)
- 10056-101H2 (spinal cord, fetal, donor1)
- 10159-103A6 (spinal cord, adult, donor10252)
- 10181-103D1 (spinal cord - adult, donor10196)
- 10359-105E8 (spinal cord, newborn, donor10223)
- 10369-105F9 (spinal cord, adult, donor10258)
- 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
- 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
- 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
- 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
- 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002240 (spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5 | p@chr8:131864839..131864841, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr8:131864839..131864841,+#_fee0980fbd105249b61718654dd003e5 | p@chr8:131864839..131864841, + |
| 3.04e-85 | FFCP PHASE1:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549d | p@chr17:42993851..42993858, - |
| 3.04e-85 | FFCP PHASE2:Hg19::chr17:42993851..42993858,-#_2aed28010ad63de6ac48aa0001df549d | p@chr17:42993851..42993858, - |
| 4.06e-85 | FFCP PHASE2:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9 | p@chr17:42993904..42993912, - |
| 4.06e-85 | FFCP PHASE1:Hg19::chr17:42993904..42993912,-#_efcb82e50f11e4fda3228569936a17a9 | p@chr17:42993904..42993912, - |
| 4.03e-84 | FFCP PHASE1:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3f | p7@MYO16 |
| 4.03e-84 | FFCP PHASE2:Hg19::chr13:109248336..109248343,+#_99a964903b7746b7b69c851548f36f3f | p7@MYO16 |
| 4.55e-74 | FFCP PHASE1:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1 | p@chr1:161274636..161274641, - |
| 4.55e-74 | FFCP PHASE2:Hg19::chr1:161274636..161274641,-#_03037c75549184efc19579a32fd362f1 | p@chr1:161274636..161274641, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr18:84268738..84268777, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr11:96608388..96608420, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr11:96608388..96608420, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr18:84268738..84268777, - |
| 2.48e-72 | FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr2:70053872..70053879, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603 | p3@Prrxl1 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_258fb0a3c4115d016ff3071a1d4f0603 | p3@Prrxl1 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_258fb0a3c4115d016ff3071a1d4f0603 | p@chr2:70053872..70053879, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87 | p@chrX:100489588..100489605, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chrX:100489588..100489605,+#_c880192fd7768accdb6ca7fa4d24eb87 | p@chrX:100489588..100489605, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87 | p@chr16:19800150..19800179, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chr16:19800150..19800179,+#_c880192fd7768accdb6ca7fa4d24eb87 | p@chr16:19800150..19800179, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7a | p2@CNTF |
| 1.54e-66 | FFCP PHASE2:Hg19::chr11:58390160..58390175,+#_343f38d6138209fa0b4120e31b57dc7a | p2@CNTF |
| 1.71e-66 | FFCP PHASE2:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ec | p@chr15:46702462..46702465, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ec | p@chr1:161275096..161275109, - |
| 1.71e-66 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_78b46b7b6870ce15b254749bad0dc1ec | p@chr1:161275096..161275109, - |
| 1.71e-66 | FFCP PHASE1:Hg19::chr15:46702462..46702465,+#_78b46b7b6870ce15b254749bad0dc1ec | p@chr15:46702462..46702465, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2d | p@chr1:60460743..60460750, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2d | p43@GFAP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:60460743..60460750,+#_6b3324de06f1b234c9c863aab3517a2d | p@chr1:60460743..60460750, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr17:42984119..42984130,-#_6b3324de06f1b234c9c863aab3517a2d | p43@GFAP |
| 3.35e-66 | FFCP PHASE2:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832 | p@chr17:42983263..42983264, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr17:42983263..42983264,-#_38f070c55b31ed62d49420b8ac246832 | p@chr17:42983263..42983264, - |
| 1.35e-65 | FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954a | p4@Hoxb9 |
| 1.35e-65 | FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_975a2a6a6d82cf1fbb1287c666d1954a | p4@Hoxb9 |
| 1.71e-64 | FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075d | p6@Slc6a5 |
| 1.71e-64 | FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_c99df7a95440a70cef022499fe7e075d | p6@Slc6a5 |
| 2.34e-60 | FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0b | p6@Hoxb8 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_ade1a99995b8894ff129615462b0cf0b | p6@Hoxb8 |
| 9.99e-60 | FFCP PHASE2:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94e | p@chr18:77014816..77014819, - |
| 9.99e-60 | FFCP PHASE1:Hg19::chr18:77014816..77014819,-#_3305807e2df5447d02f3dbfef8a4f94e | p@chr18:77014816..77014819, - |
| 4.07e-59 | FFCP PHASE2:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fe | p4@FA2H |
| 4.07e-59 | FFCP PHASE1:Hg19::chr16:74808506..74808519,-#_4dce5c293c53249d04060b7bb67666fe | p4@FA2H |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8 | p3@Tlx3 |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_fc10ec4e21d02e70f04363598e2374b8 | p3@Tlx3 |
| 1.09e-58 | FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9 | p1@Uts2 |
| 1.09e-58 | FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_f74f4429b884ae6349be6339595fd7b9 | p1@Uts2 |
| 1.36e-58 | FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5 | p@chr11:96146541..96146544, + |
| 1.36e-58 | FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_7888da431a41af1f9f008767f8cc6bf5 | p@chr11:96146541..96146544, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037 | p@chr11:96148092..96148105, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_dc6eca90cf960f0418b796dc4a612037 | p@chr11:96148092..96148105, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037 | p13@Grm5 |
| 3.91e-58 | FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_dc6eca90cf960f0418b796dc4a612037 | p13@Grm5 |
| 2.88e-55 | FFCP PHASE2:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3 | p@chr6:133424178..133424190, - |
| 2.88e-55 | FFCP PHASE1:Hg19::chr6:133424178..133424190,-#_5c46cfe3937370d2e6567dcc1d513bb3 | p@chr6:133424178..133424190, - |
| 4.17e-55 | FFCP PHASE2:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3a | p@chrX:100489564..100489583, + |
| 4.17e-55 | FFCP PHASE1:Hg19::chrX:100489564..100489583,+#_e8939c2878b527b16ed489cf27e33b3a | p@chrX:100489564..100489583, + |
| 4.17e-55 | FFCP PHASE2:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3a | p@chr1:161275189..161275203, - |
| 4.17e-55 | FFCP PHASE1:Hg19::chr1:161275189..161275203,-#_e8939c2878b527b16ed489cf27e33b3a | p@chr1:161275189..161275203, - |
| 7.24e-55 | FFCP PHASE1:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9 | p@chr17:42983316..42983326, - |
| 7.24e-55 | FFCP PHASE2:Hg19::chr17:42983316..42983326,-#_928adb4f3f447dac1186cbef9ba547f9 | p@chr17:42983316..42983326, - |
| 1.81e-54 | FFCP PHASE1:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9 | p@chr1:161275111..161275127, - |
| 1.81e-54 | FFCP PHASE2:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9 | p@chr2:27073036..27073042, - |
| 1.81e-54 | FFCP PHASE1:Hg19::chr2:27073036..27073042,-#_5befbe9cfe92e32b8e53544bea9f79b9 | p@chr2:27073036..27073042, - |
| 1.81e-54 | FFCP PHASE2:Hg19::chr1:161275111..161275127,-#_5befbe9cfe92e32b8e53544bea9f79b9 | p@chr1:161275111..161275127, - |
| 2.19e-53 | FFCP PHASE2:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997b | p@chr14:36367955..36367964, + |
| 2.19e-53 | FFCP PHASE1:Hg19::chr14:36367955..36367964,+#_0bbea964c3257fb2785f33416d5f997b | p@chr14:36367955..36367964, + |
| 2.97e-53 | FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189 | p1@Gbx1 |
| 2.97e-53 | FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_801a2e9f3520fe98891f932fb26a9189 | p1@Gbx1 |
| 3.75e-53 | FFCP PHASE2:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8 | p@chr11:114146042..114146050, - |
| 3.75e-53 | FFCP PHASE1:Hg19::chr11:114146042..114146050,-#_3c9891b01380d7035e0b2102d5dad6c8 | p@chr11:114146042..114146050, - |
| 4.89e-53 | FFCP PHASE1:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1e | p@chr16:7137754..7137799, + |
| 4.89e-53 | FFCP PHASE2:Hg19::chr16:7137754..7137799,+#_653991d48ac73311dfd88ef30fbdce1e | p@chr16:7137754..7137799, + |
| 4.89e-53 | FFCP PHASE2:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1e | p12@BRP44 |
| 4.89e-53 | FFCP PHASE1:Hg19::chr1:167905363..167905364,-#_653991d48ac73311dfd88ef30fbdce1e | p12@BRP44 |
| 6.39e-53 | FFCP PHASE2:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cb | p24@TRIM29 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr11:119999153..119999163,-#_8d502061023059c9fc0733defc3012cb | p24@TRIM29 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cb | p23@PLEKHG1 |
| 6.39e-53 | FFCP PHASE2:Hg19::chr6:151054827..151054836,+#_8d502061023059c9fc0733defc3012cb | p23@PLEKHG1 |
| 1.99e-52 | FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9 | p@chr2:74530108..74530131, + |
| 1.99e-52 | FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9 | p8@Hoxb6 |
| 1.99e-52 | FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_7998c739fe4522ca28050ac4ea1adfe9 | p@chr2:74530108..74530131, + |
| 1.99e-52 | FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7998c739fe4522ca28050ac4ea1adfe9 | p8@Hoxb6 |
| 2.3e-52 | FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95a | p3@Slc6a5 |
| 2.3e-52 | FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_395b66210d31a638575d4c319a01d95a | p3@Slc6a5 |
| 4.11e-52 | FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899 | p5@Hoxd10 |
| 4.11e-52 | FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_73d7bb4ed97092da66f38eb36a671899 | p5@Hoxd10 |
| 8.11e-51 | FFCP PHASE2:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cb | p40@GFAP |
| 8.11e-51 | FFCP PHASE1:Hg19::chr17:42989173..42989181,-#_51564c4c13bd8ea04095547d44ad74cb | p40@GFAP |
| 1.89e-50 | FFCP PHASE2:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254a | p@chr17:42983296..42983307, - |
| 1.89e-50 | FFCP PHASE1:Hg19::chr17:42983296..42983307,-#_c5ec8b4397a79d4aa007406b8a8a254a | p@chr17:42983296..42983307, - |
| 2.23e-50 | FFCP PHASE1:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3 | p@chrX:106692569..106692585, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chrX:106692569..106692585,+#_2aef7ed5593a558fdf072a918be99bc3 | p@chrX:106692569..106692585, + |
| 2.23e-50 | FFCP PHASE1:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3 | p@chrX:103046616..103046621, + |
| 2.23e-50 | FFCP PHASE2:Hg19::chrX:103046616..103046621,+#_2aef7ed5593a558fdf072a918be99bc3 | p@chrX:103046616..103046621, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977 | p1@Npff |
| 1.47e-48 | FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_c703993c570c40942473b8340ce8b977 | p1@Npff |
| 2.57e-48 | FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5 | p12@6330527O06Rik |
| 2.57e-48 | FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_d478f467c81168abbf8820c9d97f27c5 | p12@6330527O06Rik |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the central nervous system which descends from the hindbrain within the vertebral column.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
