Personal tools

UBERON:0003133: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000990
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:33, 27 June 2012

Name:reproductive organ
Definition:"An organ involved in reproduction" [UBERON:xp]
Xrefs:
links:

EMAPA:17381
MA:0001752
MESH:A.05.360
ncithesaurus:Genitalia
OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA
SCTID:128181006
TGMA:0000591

WBbt:0008422
Synonyms: "genital organ" EXACT []
"genitalia" RELATED PLURAL []
"reproductive system organ" EXACT []
"sex organ" EXACT []
Comments:GO uses genitalia for the singular organ
Subset: functional_classification
organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0005156(reproductive structure)
part_of:UBERON:0000990(reproductive system)



Children

is a:UBERON:0000991 (gonad),UBERON:0003134 (female reproductive organ),UBERON:0003135 (male reproductive organ),UBERON:0004175 (internal genitalia),UBERON:0004176 (external genitalia)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003133 (reproductive organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.61e-55FFCP PHASE2:Mm9::chr4:143998300..143998343,-#_52bca3e9131b2e30e63bf7ce09daea1cp1@Pramef12
9.61e-55FFCP PHASE1:Mm9::chr4:143998300..143998343,-#_52bca3e9131b2e30e63bf7ce09daea1cp1@Pramef12
1.58e-51FFCP PHASE2:Mm9::chr5:31271028..31271040,+#_5622c3e5d250fa801b1d4f99d725dc25p1@Tcf23
1.58e-51FFCP PHASE1:Mm9::chr5:31271028..31271040,+#_5622c3e5d250fa801b1d4f99d725dc25p1@Tcf23
3.71e-50FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_47e6c01cc8d755b527e2b6f01b5ca706p2@Asz1
3.71e-50FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_47e6c01cc8d755b527e2b6f01b5ca706p2@Asz1
1.83e-48FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_ad45e45853e4af855a30411b5a84a2b1p1@Mael
1.83e-48FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_ad45e45853e4af855a30411b5a84a2b1p1@Mael
1.7e-47FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_a56abae6b8cf930758fbf39969268821p7@Tulp2
1.7e-47FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_a56abae6b8cf930758fbf39969268821p7@Tulp2
2.69e-47FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_a4700c173fd9de08ea42e2172f72b2b7p1@Piwil2
2.69e-47FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_a4700c173fd9de08ea42e2172f72b2b7p1@Piwil2
1.02e-46FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_39535b8cf5af7bf689f4f945d81e9b62p1@Cst12
1.02e-46FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_39535b8cf5af7bf689f4f945d81e9b62p1@Cst12
1.26e-46FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_ce5738d90deb2d560b1422edabd73042p2@Slc25a31
1.26e-46FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_ce5738d90deb2d560b1422edabd73042p2@Slc25a31
1.26e-46FFCP PHASE1:Mm9::chr3:54985946..54985981,+#_ce5738d90deb2d560b1422edabd73042p1@Sohlh2
1.26e-46FFCP PHASE2:Mm9::chr3:54985946..54985981,+#_ce5738d90deb2d560b1422edabd73042p1@Sohlh2
1.48e-46FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_7f5914c3d1e87b787829d56b1523b75fp1@Asz1
1.48e-46FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_7f5914c3d1e87b787829d56b1523b75fp1@Asz1
1.51e-46FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_fe86b019e45d31ca934eceffc5641ddfp@chr12:31775417..31775434, -
1.51e-46FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_fe86b019e45d31ca934eceffc5641ddfp@chr12:31775417..31775434, -
7.47e-46FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_122d7683f37f85f046d2e7ac098d0a4dp6@Folr1
7.47e-46FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_122d7683f37f85f046d2e7ac098d0a4dp6@Folr1
4.24e-45FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_081de5891445140d16514200cb6626c0p1@Dazl
4.24e-45FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_081de5891445140d16514200cb6626c0p1@Dazl
8.73e-45FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_74bae5968331c6b3d4eebd5d8d370641p5@Gstm6
8.73e-45FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_74bae5968331c6b3d4eebd5d8d370641p5@Gstm6
1.45e-44FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_c308f5dcdfca7a540fea387da50f3471p1@Mov10l1
1.45e-44FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_c308f5dcdfca7a540fea387da50f3471p1@Mov10l1
3.69e-44FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_3f9d13c6986f4ea042d51fb62806bcc6p1@Sycp1
3.69e-44FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_3f9d13c6986f4ea042d51fb62806bcc6p1@Sycp1
6.62e-44FFCP PHASE1:Mm9::chr6:49345558..49345593,+#_507f1b1f24c9690eeaf665b1310ec0bfp2@Stk31
6.62e-44FFCP PHASE2:Mm9::chr6:49345558..49345593,+#_507f1b1f24c9690eeaf665b1310ec0bfp2@Stk31
8.13e-44FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_eeac46cce40d112dce4e484f53ecabbbp@chrX:98989738..98989756, -
8.13e-44FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_eeac46cce40d112dce4e484f53ecabbbp@chrX:98989738..98989756, -
1.74e-43FFCP PHASE1:Mm9::chrX:135868376..135868409,+#_20a5795a38306d03f8b3f67f532338d3p1@Trap1a
1.74e-43FFCP PHASE2:Mm9::chrX:135868376..135868409,+#_20a5795a38306d03f8b3f67f532338d3p1@Trap1a
1.91e-43FFCP PHASE1:Mm9::chrX:35232004..35232025,-#_872ec09bba8dcc32097eaa63221410ffp@chrX:35232004..35232025, -
1.91e-43FFCP PHASE2:Mm9::chrX:35232004..35232025,-#_872ec09bba8dcc32097eaa63221410ffp@chrX:35232004..35232025, -
2.98e-43FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_0234a4683ddd9905b409fb29c0cadeefp@chr15:102277099..102277126, +
2.98e-43FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_0234a4683ddd9905b409fb29c0cadeefp@chr15:102277099..102277126, +
4.11e-43FFCP PHASE1:Mm9::chr11:100939677..100939722,+#_83f4f22bada4433171474114e208e58ep1@Hsd17b1
4.11e-43FFCP PHASE2:Mm9::chr11:100939677..100939722,+#_83f4f22bada4433171474114e208e58ep1@Hsd17b1
5.11e-43FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_e9c209be035df2108fad60727b020da4p3@Cst9
5.11e-43FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_e9c209be035df2108fad60727b020da4p3@Cst9
5.11e-43FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_e9c209be035df2108fad60727b020da4p22@Rgs3
5.11e-43FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_e9c209be035df2108fad60727b020da4p22@Rgs3
1.44e-42FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_7d369a23d72764d2d6ba9c8171e5be59p@chr7:149469129..149469146, +
1.44e-42FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_7d369a23d72764d2d6ba9c8171e5be59p1@Fkbp6
1.44e-42FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_7d369a23d72764d2d6ba9c8171e5be59p1@Fkbp6
1.44e-42FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_7d369a23d72764d2d6ba9c8171e5be59p@chr7:149469129..149469146, +
1.65e-42FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_a642bff79edf001604c30edd6783a847p1@Mir202
1.65e-42FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_a642bff79edf001604c30edd6783a847p1@Mir202
2.86e-42FFCP PHASE2:Mm9::chr11:87218551..87218615,+#_ce6d60629c73642222cdbb0fa55dd88cp1@Tex14
2.86e-42FFCP PHASE1:Mm9::chr11:87218551..87218615,+#_ce6d60629c73642222cdbb0fa55dd88cp1@Tex14
4.03e-42FFCP PHASE1:Mm9::chr17:32171438..32171468,-#_30b3c834c5d20ec23a095fb1b35d2837p1@Hsf2bp
4.03e-42FFCP PHASE2:Mm9::chr17:32171438..32171468,-#_30b3c834c5d20ec23a095fb1b35d2837p1@Hsf2bp
6.5e-42FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_2c5a6c6ae1a76c51eb604bada459ec62p1@Hormad1
6.5e-42FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_2c5a6c6ae1a76c51eb604bada459ec62p1@Hormad1
6.96e-42FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_9fda5fc7f515d27b01287b41086f373dp1@Hist1h2aa
6.96e-42FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_9fda5fc7f515d27b01287b41086f373dp1@Hist1h2aa
3.49e-41FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_91ad0a3901e8fd65246391bec813a8ffp1@Tex12
3.49e-41FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_91ad0a3901e8fd65246391bec813a8ffp1@Tex12
4.98e-41FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_a384cdb901703acb2c75ef94be77235fp1@Gm949
4.98e-41FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_a384cdb901703acb2c75ef94be77235fp1@Gm949
7.1e-41FFCP PHASE2:Mm9::chr19:40968642..40968653,+#_8da1fdbad49df58f7c951e443030253bp@chr19:40968642..40968653, +
7.1e-41FFCP PHASE1:Mm9::chr19:40968642..40968653,+#_8da1fdbad49df58f7c951e443030253bp@chr19:40968642..40968653, +
1.25e-40FFCP PHASE2:Mm9::chr3:107746250..107746266,-#_baf6ef768ec18ed144f8807e21718688p4@Gstm6
1.25e-40FFCP PHASE1:Mm9::chr3:107746250..107746266,-#_baf6ef768ec18ed144f8807e21718688p4@Gstm6
1.44e-40FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_c4f81872c7ed394fc52a4b3ea67d4597p1@Fam178b
1.44e-40FFCP PHASE1:Mm9::chr6:145564529..145564546,+#_c4f81872c7ed394fc52a4b3ea67d4597p1@Tuba3b
1.44e-40FFCP PHASE2:Mm9::chr6:145564529..145564546,+#_c4f81872c7ed394fc52a4b3ea67d4597p1@Tuba3b
1.44e-40FFCP PHASE1:Mm9::chr6:125236033..125236068,-#_c4f81872c7ed394fc52a4b3ea67d4597p1@Tuba3a, p2@Tuba3b
1.44e-40FFCP PHASE2:Mm9::chr6:125236033..125236068,-#_c4f81872c7ed394fc52a4b3ea67d4597p1@Tuba3a, p2@Tuba3b
1.44e-40FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_c4f81872c7ed394fc52a4b3ea67d4597p1@Fam178b
2.0e-40FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_ecc927edb62eb34c02e57e94a7a7d351p1@Exoc3l2
2.0e-40FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_ecc927edb62eb34c02e57e94a7a7d351p1@Exoc3l2
4.22e-40FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_1f0a1917ddacd01c6111d54353a4e4dfp1@Tdrd12
4.22e-40FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_1f0a1917ddacd01c6111d54353a4e4dfp1@Tdrd12
4.55e-40FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_4cb7fe795e5f0597b3b968496e5cc9bcp4@Taf9b
4.55e-40FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_4cb7fe795e5f0597b3b968496e5cc9bcp4@Taf9b
9.32e-40FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_b641b03369bf3bbada26596c5cc3a4a0p2@Exoc3l2
9.32e-40FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_b641b03369bf3bbada26596c5cc3a4a0p3@Hsd17b3
9.32e-40FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_b641b03369bf3bbada26596c5cc3a4a0p2@Exoc3l2
9.32e-40FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_b641b03369bf3bbada26596c5cc3a4a0p3@Hsd17b3
1.01e-39FFCP PHASE1:Mm9::chrX:50788166..50788192,+#_d7dde87cb5402ba09e5569ce7b212fd3p1@Etd
1.01e-39FFCP PHASE2:Mm9::chrX:50788166..50788192,+#_d7dde87cb5402ba09e5569ce7b212fd3p1@Etd
1.09e-39FFCP PHASE2:Mm9::chrX:50788129..50788149,+#_f2affcd4b68ea0fcc56e32c0735e3d61p2@Etd
1.09e-39FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_f2affcd4b68ea0fcc56e32c0735e3d61p3@Dmrt1
1.09e-39FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_f2affcd4b68ea0fcc56e32c0735e3d61p3@Dmrt1
1.09e-39FFCP PHASE1:Mm9::chrX:50788129..50788149,+#_f2affcd4b68ea0fcc56e32c0735e3d61p2@Etd
1.28e-39FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_bc8c98c1af505a31bcc6baed29b598e1p1@Tktl1
1.28e-39FFCP PHASE2:Mm9::chr8:26314330..26314348,-#_bc8c98c1af505a31bcc6baed29b598e1p@chr8:26314330..26314348, -
1.28e-39FFCP PHASE1:Mm9::chr8:26314330..26314348,-#_bc8c98c1af505a31bcc6baed29b598e1p@chr8:26314330..26314348, -
1.28e-39FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_bc8c98c1af505a31bcc6baed29b598e1p1@Tktl1
1.39e-39FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_2eca3adf5ed85e4863de928d150c5930p3@Tex12
1.39e-39FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_2eca3adf5ed85e4863de928d150c5930p3@Tex12
1.67e-39FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_94506a91cc5203aa7678a30aacdec48fp2@Fkbp6
1.67e-39FFCP PHASE2:Mm9::chrX:34758264..34758276,-#_94506a91cc5203aa7678a30aacdec48fp@chrX:34758264..34758276, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003133&oldid=1837679"