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Revision as of 13:44, 27 June 2012

Name:otic cup

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003069(otic placode)



Children

develops from:UBERON:0003051 (ear vesicle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009123 (otic cup), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_b1910012f17566919440def95cc5be02p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_b1910012f17566919440def95cc5be02p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_b1910012f17566919440def95cc5be02p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_b1910012f17566919440def95cc5be02p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_b1910012f17566919440def95cc5be02p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_b1910012f17566919440def95cc5be02p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_b1910012f17566919440def95cc5be02p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_b1910012f17566919440def95cc5be02p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_b1910012f17566919440def95cc5be02p3@Fanca
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_b1910012f17566919440def95cc5be02p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_b1910012f17566919440def95cc5be02p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_b1910012f17566919440def95cc5be02p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_b1910012f17566919440def95cc5be02p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_b1910012f17566919440def95cc5be02p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_b1910012f17566919440def95cc5be02p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_b1910012f17566919440def95cc5be02p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_b1910012f17566919440def95cc5be02p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_b1910012f17566919440def95cc5be02p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_b1910012f17566919440def95cc5be02p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_b1910012f17566919440def95cc5be02p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_b1910012f17566919440def95cc5be02p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_b1910012f17566919440def95cc5be02p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_b1910012f17566919440def95cc5be02p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_b1910012f17566919440def95cc5be02p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_b1910012f17566919440def95cc5be02p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_b1910012f17566919440def95cc5be02p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_b1910012f17566919440def95cc5be02p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_b1910012f17566919440def95cc5be02p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_b1910012f17566919440def95cc5be02p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_b1910012f17566919440def95cc5be02p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_b1910012f17566919440def95cc5be02p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_b1910012f17566919440def95cc5be02p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_b1910012f17566919440def95cc5be02p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_b1910012f17566919440def95cc5be02p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_b1910012f17566919440def95cc5be02p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_b1910012f17566919440def95cc5be02p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_b1910012f17566919440def95cc5be02p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_b1910012f17566919440def95cc5be02p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_b1910012f17566919440def95cc5be02p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_b1910012f17566919440def95cc5be02p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_b1910012f17566919440def95cc5be02p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_b1910012f17566919440def95cc5be02p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_b1910012f17566919440def95cc5be02p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_b1910012f17566919440def95cc5be02p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_b1910012f17566919440def95cc5be02p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_b1910012f17566919440def95cc5be02p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_b1910012f17566919440def95cc5be02p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_b1910012f17566919440def95cc5be02p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_b1910012f17566919440def95cc5be02p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_b1910012f17566919440def95cc5be02p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_b1910012f17566919440def95cc5be02p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_b1910012f17566919440def95cc5be02p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_b1910012f17566919440def95cc5be02p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_b1910012f17566919440def95cc5be02p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_b1910012f17566919440def95cc5be02p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_b1910012f17566919440def95cc5be02p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_b1910012f17566919440def95cc5be02p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_b1910012f17566919440def95cc5be02p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_b1910012f17566919440def95cc5be02p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_b1910012f17566919440def95cc5be02p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_b1910012f17566919440def95cc5be02p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_b1910012f17566919440def95cc5be02p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_b1910012f17566919440def95cc5be02p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_b1910012f17566919440def95cc5be02p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_b1910012f17566919440def95cc5be02p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_b1910012f17566919440def95cc5be02p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_b1910012f17566919440def95cc5be02p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_b1910012f17566919440def95cc5be02p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_b1910012f17566919440def95cc5be02p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_b1910012f17566919440def95cc5be02p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_b1910012f17566919440def95cc5be02p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_b1910012f17566919440def95cc5be02p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_b1910012f17566919440def95cc5be02p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_b1910012f17566919440def95cc5be02p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_b1910012f17566919440def95cc5be02p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_b1910012f17566919440def95cc5be02p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_b1910012f17566919440def95cc5be02p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_b1910012f17566919440def95cc5be02p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_b1910012f17566919440def95cc5be02p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_b1910012f17566919440def95cc5be02p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_b1910012f17566919440def95cc5be02p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_b1910012f17566919440def95cc5be02p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_b1910012f17566919440def95cc5be02p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_b1910012f17566919440def95cc5be02p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_b1910012f17566919440def95cc5be02p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_b1910012f17566919440def95cc5be02p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_b1910012f17566919440def95cc5be02p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_b1910012f17566919440def95cc5be02p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_b1910012f17566919440def95cc5be02p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_b1910012f17566919440def95cc5be02p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_b1910012f17566919440def95cc5be02p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_b1910012f17566919440def95cc5be02p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_b1910012f17566919440def95cc5be02p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_b1910012f17566919440def95cc5be02p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_b1910012f17566919440def95cc5be02p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_b1910012f17566919440def95cc5be02p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_b1910012f17566919440def95cc5be02p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_b1910012f17566919440def95cc5be02p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_b1910012f17566919440def95cc5be02p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_b1910012f17566919440def95cc5be02p@chr3:35012397..35012405, +

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