Personal tools

UBERON:0010709: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0010709 |name=pelvic complex |namespace= |def="Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic ...")
 
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010709
|alt_id=
|name=pelvic complex
|namespace=
|def="Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215]
|xref=FMA:7184;;SCTID:416631005;;VSAO:0000215
|is_a=UBERON:0010707
|synonym="lower limb" RELATED INCONSISTENT [FMA:7184];;"pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm];;"pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm]
|comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here
|comment=AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010709
|is_a=UBERON:0010707
|is_obsolete=
|located_in=
|located_in=
|name=pelvic complex
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="lower limb" RELATED INCONSISTENT [FMA:7184];;"pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm];;"pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm]
|union_of=
|xref=FMA:7184;;SCTID:416631005;;VSAO:0000215
}}
}}

Revision as of 11:51, 12 September 2014

Name:pelvic complex
Definition:"Appendage girdle complex that when present, encompasses the pelvic appendicular skeleton and the pelvic girdle." [VSAO:0000215]
Xrefs:
links:

FMA:7184
SCTID:416631005

VSAO:0000215
Synonyms: "lower limb" RELATED INCONSISTENT [FMA:7184]
"pelvic girdle plus pelvic limb or fin" EXACT [UBERON:cjm]
"pelvic girdle plus posterior limb or fin" EXACT [UBERON:cjm]
Comments:AO notes: note that the FMA uses the terms 'upper limb' and 'lower limb' to refer to the entire appendage complex (free limb plus girdle region). Note the MA class 'hindlimb' may also belong here

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010707(appendage girdle complex)



Children

part of:UBERON:0002103 (hindlimb),UBERON:0004709 (pelvic appendage),UBERON:0010742 (bone of pelvic complex),UBERON:0010890 (pelvic complex muscle),UBERON:0012476 (skeleton of pelvic complex),UBERON:0014792 (musculature of pelvic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010709 (pelvic complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_abf99622451242fa93ca1c1f69c58113p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_abf99622451242fa93ca1c1f69c58113p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_abf99622451242fa93ca1c1f69c58113p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_abf99622451242fa93ca1c1f69c58113p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_abf99622451242fa93ca1c1f69c58113p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_abf99622451242fa93ca1c1f69c58113p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_abf99622451242fa93ca1c1f69c58113p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_abf99622451242fa93ca1c1f69c58113p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_abf99622451242fa93ca1c1f69c58113p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_abf99622451242fa93ca1c1f69c58113p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_abf99622451242fa93ca1c1f69c58113p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_abf99622451242fa93ca1c1f69c58113p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_abf99622451242fa93ca1c1f69c58113p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_abf99622451242fa93ca1c1f69c58113p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_abf99622451242fa93ca1c1f69c58113p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_abf99622451242fa93ca1c1f69c58113p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_abf99622451242fa93ca1c1f69c58113p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_abf99622451242fa93ca1c1f69c58113p@chr22:25535147..25535150, +
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_2cddb37643256413acf560b0987bae8fp@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_2cddb37643256413acf560b0987bae8fp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_2cddb37643256413acf560b0987bae8fp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_2cddb37643256413acf560b0987bae8fp93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_2cddb37643256413acf560b0987bae8fp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_2cddb37643256413acf560b0987bae8fp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_2cddb37643256413acf560b0987bae8fp@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_2cddb37643256413acf560b0987bae8fp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_2cddb37643256413acf560b0987bae8fp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_2cddb37643256413acf560b0987bae8fp77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_2cddb37643256413acf560b0987bae8fp7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_2cddb37643256413acf560b0987bae8fp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_2cddb37643256413acf560b0987bae8fp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_2cddb37643256413acf560b0987bae8fp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_2cddb37643256413acf560b0987bae8fp46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_2cddb37643256413acf560b0987bae8fp@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_2cddb37643256413acf560b0987bae8fp77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_2cddb37643256413acf560b0987bae8fp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_2cddb37643256413acf560b0987bae8fp@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_2cddb37643256413acf560b0987bae8fp93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_2cddb37643256413acf560b0987bae8fp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_2cddb37643256413acf560b0987bae8fp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_2cddb37643256413acf560b0987bae8fp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_2cddb37643256413acf560b0987bae8fp7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_2cddb37643256413acf560b0987bae8fp@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_2cddb37643256413acf560b0987bae8fp54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_2cddb37643256413acf560b0987bae8fp@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_2cddb37643256413acf560b0987bae8fp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_2cddb37643256413acf560b0987bae8fp1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_2cddb37643256413acf560b0987bae8fp104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_2cddb37643256413acf560b0987bae8fp46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_2cddb37643256413acf560b0987bae8fp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_2cddb37643256413acf560b0987bae8fp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_2cddb37643256413acf560b0987bae8fp108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_2cddb37643256413acf560b0987bae8fp@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_2cddb37643256413acf560b0987bae8fp@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_2cddb37643256413acf560b0987bae8fp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_2cddb37643256413acf560b0987bae8fp@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_2cddb37643256413acf560b0987bae8fp54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_2cddb37643256413acf560b0987bae8fp@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_2cddb37643256413acf560b0987bae8fp@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_2cddb37643256413acf560b0987bae8fp@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_2cddb37643256413acf560b0987bae8fp@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_2cddb37643256413acf560b0987bae8fp104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_2cddb37643256413acf560b0987bae8fp@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_2cddb37643256413acf560b0987bae8fp@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_2cddb37643256413acf560b0987bae8fp@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_2cddb37643256413acf560b0987bae8fp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_2cddb37643256413acf560b0987bae8fp108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_2cddb37643256413acf560b0987bae8fp@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_2cddb37643256413acf560b0987bae8fp@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_2cddb37643256413acf560b0987bae8fp@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_2cddb37643256413acf560b0987bae8fp@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_2cddb37643256413acf560b0987bae8fp@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_2cddb37643256413acf560b0987bae8fp@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_2cddb37643256413acf560b0987bae8fp@chr5:117747577..117747580, +
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_d5a00cc445c5273bcdeac3fa03192fa1p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_d5a00cc445c5273bcdeac3fa03192fa1p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_d5a00cc445c5273bcdeac3fa03192fa1p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_d5a00cc445c5273bcdeac3fa03192fa1p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_d5a00cc445c5273bcdeac3fa03192fa1p38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_d5a00cc445c5273bcdeac3fa03192fa1p@chr12:69653866..69653876, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010709&oldid=3274713"