CL:0000355: Difference between revisions
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|part_of= | |part_of=UBERON:0001134 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:01, 27 June 2012
| Name: | muscle stem cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A multifate stem cell found in skeletal muscle than can differentiate into many different cell types. Distinct cell type from satellite cell." [PMID:18282570] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000048(multi fate stem cell) |
|---|---|
| part_of: | UBERON:0001134(skeletal muscle tissue) |
Children
| derives from: | FF:0000267 (mouse muscle derived stem cell sample) |
|---|---|
| develops from: | CL:0000056 (myoblast),CL:0000515 (skeletal muscle myoblast) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
- 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
- 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))
Mouse (Mus musculus)
- 12159-128G8 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL))
- 12161-128H1 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL))
- 12163-128H3 (MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000355 (muscle stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_b714024b24239acc78b8b11a5384a545 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_b714024b24239acc78b8b11a5384a545 | p@chrX:160838683..160838694, + |
| 9.51e-51 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_7e420de552d535a4d983d052523d1970 | p@chr6:53359400..53359406, + |
| 9.51e-51 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_7e420de552d535a4d983d052523d1970 | p@chr6:53359400..53359406, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_f13a3b71a8720b8d068167ce39ef85be | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_f13a3b71a8720b8d068167ce39ef85be | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_f13a3b71a8720b8d068167ce39ef85be | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_f13a3b71a8720b8d068167ce39ef85be | p@chrX:65748600..65748616, + |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_73fd4c505d9a6c7ef6cc024b54af8f32 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_73fd4c505d9a6c7ef6cc024b54af8f32 | p@chrX:160838787..160838800, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_6da17fb1c1e0c1396d38b83f8de3495f | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_6da17fb1c1e0c1396d38b83f8de3495f | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_854d4f94c056563740c3022c74055245 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_854d4f94c056563740c3022c74055245 | p@chr17:14813242..14813246, - |
| 4.96e-40 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_56b6189592669178634c16f1b8ec0f22 | p8@ARHGAP22 |
| 4.96e-40 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_56b6189592669178634c16f1b8ec0f22 | p8@ARHGAP22 |
| 7.49e-40 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_1d013a5b5b62c44153772bcbe36bea3e | p2@LRRC17 |
| 7.49e-40 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_1d013a5b5b62c44153772bcbe36bea3e | p2@LRRC17 |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_b8dfff384ed5eab950fc3e88589d6149 | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_b8dfff384ed5eab950fc3e88589d6149 | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_657493cc071d0ad0ff0e906fcd1b14e6 | p@chrX:160840025..160840037, + |
| 7.88e-39 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_24b3ee3119f945447ce102ccb8cd1e64 | p4@ARHGAP22 |
| 7.88e-39 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_24b3ee3119f945447ce102ccb8cd1e64 | p4@ARHGAP22 |
| 8.82e-38 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_f1ab06380451a3014518ea9315ac49de | p@chr11:102661517..102661541, - |
| 8.82e-38 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_f1ab06380451a3014518ea9315ac49de | p@chr11:102661517..102661541, - |
| 2.99e-37 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_481affff19ed66cbe0bf0d443d535f7a | p@chr4:74703497..74703511, + |
| 2.99e-37 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_481affff19ed66cbe0bf0d443d535f7a | p@chr4:74703497..74703511, + |
| 9.17e-37 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_abe007c0725f679f85d9c103100c461b | p@chr4:7846444..7846449, - |
| 9.17e-37 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_abe007c0725f679f85d9c103100c461b | p@chr4:7846444..7846449, - |
| 6.45e-36 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_7854b8bda61ff8088367e05bc53b47fe | p2@CXCL6 |
| 6.45e-36 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_7854b8bda61ff8088367e05bc53b47fe | p2@CXCL6 |
| 1.62e-35 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_39c4055179436fb462ac6bc492ad24a1 | p1@LRRC17 |
| 1.62e-35 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_39c4055179436fb462ac6bc492ad24a1 | p1@LRRC17 |
| 3.28e-35 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_f90b49c7f9406743bd29e3f4833edac7 | p@chr4:169059590..169059615, + |
| 3.28e-35 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_f90b49c7f9406743bd29e3f4833edac7 | p@chr4:169059590..169059615, + |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_7c17059a67904a1ebb85d942d557c23a | p11@Fam198b |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_7c17059a67904a1ebb85d942d557c23a | p11@Fam198b |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b6f0a6763bca2ac8b880a6f45d016807 | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b6f0a6763bca2ac8b880a6f45d016807 | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_9acc8feda4bc2bdc73256a42e53d72d2 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_9acc8feda4bc2bdc73256a42e53d72d2 | p7@Gpr39 |
| 5.9e-35 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_7ee12be787657da6590cb1eb455d9e9a | p3@LRRC17 |
| 5.9e-35 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_7ee12be787657da6590cb1eb455d9e9a | p3@LRRC17 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_9835d8556eed6d718f0bd7e0796aa15a | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_9835d8556eed6d718f0bd7e0796aa15a | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_570649bbdd98e24838d142d145e8be5e | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_570649bbdd98e24838d142d145e8be5e | p@chrX:160839768..160839780, + |
| 9.33e-35 | FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_1e398e9163c16f82d35123862d4cadc1 | p2@PAPPA |
| 9.33e-35 | FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_1e398e9163c16f82d35123862d4cadc1 | p2@PAPPA |
| 1.17e-34 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_1777063747dfcbcc4be75f1c84d145f5 | p1@CU675118 |
| 1.17e-34 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_1777063747dfcbcc4be75f1c84d145f5 | p1@CU675118 |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_7f35c35274d83488e3324a53fafba383 | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_7f35c35274d83488e3324a53fafba383 | p8@Gpr39 |
| 1.59e-34 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_45e64389a690248cd46d81ca0ba00789 | p@chr2:134548872..134548879, - |
| 1.59e-34 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_45e64389a690248cd46d81ca0ba00789 | p@chr2:134548872..134548879, - |
| 8.98e-34 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_a88e6a7663d01766f6a6c6e0c401bc83 | p3@CXCL6 |
| 8.98e-34 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_a88e6a7663d01766f6a6c6e0c401bc83 | p3@CXCL6 |
| 1.58e-33 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_bffa398e5a96b9765cfef062578ecc3c | p2@RCN3 |
| 1.58e-33 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_bffa398e5a96b9765cfef062578ecc3c | p2@RCN3 |
| 1.72e-33 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_980318dff56360df76ca6cb1cdb9b3b2 | p3@IFI27L2 |
| 1.72e-33 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_980318dff56360df76ca6cb1cdb9b3b2 | p3@IFI27L2 |
| 4.01e-33 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_a5daa774678ab339a6ee9e1324da59eb | p2@SASH1 |
| 4.01e-33 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_a5daa774678ab339a6ee9e1324da59eb | p2@SASH1 |
| 4.86e-33 | FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_1aa530340a3434002208953ac76c17fd | p@chr4:74703963..74703975, + |
| 4.86e-33 | FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_1aa530340a3434002208953ac76c17fd | p@chr4:74703963..74703975, + |
| 5.37e-33 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_275cd408b43b323e3bd0374acec74e84 | p@chr9:35685631..35685657, + |
| 5.37e-33 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_275cd408b43b323e3bd0374acec74e84 | p@chr9:35685631..35685657, + |
| 1.21e-32 | FFCP PHASE2:Hg19::chr1:219265603..219265617,-#_a1f64f645f258fcb63246788a80debb3 | p@chr1:219265603..219265617, - |
| 1.21e-32 | FFCP PHASE1:Hg19::chr1:219265603..219265617,-#_a1f64f645f258fcb63246788a80debb3 | p@chr1:219265603..219265617, - |
| 1.84e-32 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_3b184e32046bb48ae7e79665d875d3b0 | p1@BDKRB1 |
| 1.84e-32 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_3b184e32046bb48ae7e79665d875d3b0 | p1@BDKRB1 |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_1d4eb8fdacc31fb324a3e1275b6011cf | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_1d4eb8fdacc31fb324a3e1275b6011cf | p@chr7:96658543..96658553, - |
| 4.19e-32 | FFCP PHASE2:Hg19::chr7:93516064..93516108,-#_10f8bd4c9477d42176353799ab065388 | p@chr7:93516064..93516108, - |
| 4.19e-32 | FFCP PHASE1:Hg19::chr7:93516064..93516108,-#_10f8bd4c9477d42176353799ab065388 | p@chr7:93516064..93516108, - |
| 4.79e-32 | FFCP PHASE1:Hg19::chr7:93518473..93518503,+#_208ecc12055fd01070ccee72ae1900aa | p@chr7:93518473..93518503, + |
| 4.79e-32 | FFCP PHASE2:Hg19::chr7:93518473..93518503,+#_208ecc12055fd01070ccee72ae1900aa | p@chr7:93518473..93518503, + |
| 9.47e-32 | FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_f1f430ff8b8d84426c2a1f7d6b329e2c | p@chr3:106484411..106484418, + |
| 9.47e-32 | FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_f1f430ff8b8d84426c2a1f7d6b329e2c | p@chr3:106484411..106484418, + |
| 9.67e-32 | FFCP PHASE1:Hg19::chr7:93518374..93518429,-#_ec3ca844b65441a143c946ab8ddb39b3 | p@chr7:93518374..93518429, - |
| 9.67e-32 | FFCP PHASE2:Hg19::chr7:93518374..93518429,-#_ec3ca844b65441a143c946ab8ddb39b3 | p@chr7:93518374..93518429, - |
| 9.71e-32 | FFCP PHASE1:Hg19::chr7:93519497..93519525,-#_4e704fa6c05f2866d7c746a3981333b9 | p2@TFPI2 |
| 9.71e-32 | FFCP PHASE2:Hg19::chr7:93519497..93519525,-#_4e704fa6c05f2866d7c746a3981333b9 | p2@TFPI2 |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_4b935afcce1cebf54a69e6d8f5ac4405 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_4b935afcce1cebf54a69e6d8f5ac4405 | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_4b935afcce1cebf54a69e6d8f5ac4405 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_4b935afcce1cebf54a69e6d8f5ac4405 | p2@Il6 |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_1c0b0e1b3fda7b88e63157c4c4df43af | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_1c0b0e1b3fda7b88e63157c4c4df43af | p@chr10:67598037..67598049, - |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_da2bae482eb2e4bd8e9bc04751d986f7 | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_da2bae482eb2e4bd8e9bc04751d986f7 | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_5e0827f922a4ff663f3755d59d4ed438 | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_5e0827f922a4ff663f3755d59d4ed438 | p@chr18:52678391..52678395, - |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_03cd574c369c0891c7027b6505e6787b | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_03cd574c369c0891c7027b6505e6787b | p@chr6:91222095..91222107, + |
