CL:0002586: Difference between revisions
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|part_of= | |part_of=UBERON:0001782 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
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Revision as of 13:04, 27 June 2012
| Name: | retinal pigment epithelial cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell of the retinal pigmented epithelium." [GOC:tfm] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2011-03-06T03:37:09Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0000149(visual pigment cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0001782(pigmented layer of retina) |
Children
| derives from: | FF:0000158 (human retinal pigment epithelial cell sample),FF:0300100 (ARPE-19 EMT induced with TGF-beta and TNF-alpha sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
... further results Mouse (Mus musculus)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002586 (retinal pigment epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.79e-195 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73 | p@chr1:147150847..147150854, - |
| 2.79e-195 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73 | p@chr1:147150847..147150854, - |
| 3.27e-147 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22 | p2@SERPINE3 |
| 3.27e-147 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22 | p2@SERPINE3 |
| 5.41e-147 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5 | p@chr13:99135322..99135327, - |
| 5.41e-147 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5 | p@chr13:99135322..99135327, - |
| 8.98e-131 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18 | p@chr13:51913893..51913901, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18 | p@chr13:51913893..51913901, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761 | p@chr11:109990513..109990520, - |
| 3.48e-118 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761 | p@chr11:109990513..109990520, - |
| 1.16e-117 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148c | p@chr5:70308745..70308754, - |
| 1.16e-117 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148c | p@chr5:70308745..70308754, - |
| 7.95e-99 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5c | p2@C11orf9 |
| 7.95e-99 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5c | p2@C11orf9 |
| 2.17e-98 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539d | p@chr2:235591306..235591328, + |
| 2.17e-98 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539d | p@chr2:235591306..235591328, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1 | p9@C11orf9 |
| 6.24e-88 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1 | p9@C11orf9 |
| 9.74e-88 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647 | p11@CRISPLD1 |
| 9.74e-88 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647 | p11@CRISPLD1 |
| 1.52e-87 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239f | p5@ENST00000437916 |
| 1.52e-87 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239f | p5@ENST00000437916 |
| 2.28e-85 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1 | p1@SERPINE3 |
| 2.28e-85 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1 | p1@SERPINE3 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bb | p@chr3:69928426..69928436, + |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bb | p@chr3:69928426..69928436, + |
| 1.29e-74 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39 | p@chr3:69928404..69928418, + |
| 1.29e-74 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39 | p@chr3:69928404..69928418, + |
| 2.14e-74 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr6:168250971..168250985, + |
| 2.14e-74 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr6:168250971..168250985, + |
| 2.14e-74 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr22:37633537..37633546, - |
| 2.14e-74 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1a | p@chr22:37633537..37633546, - |
| 3.54e-74 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6c | p@chr1:43533230..43533270, + |
| 3.54e-74 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6c | p@chr1:43533230..43533270, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11 | p5@CLIC6 |
| 1.54e-66 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11 | p5@CLIC6 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7 | p@chr13:51913997..51914020, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7 | p@chr13:51913997..51914020, + |
| 6.53e-66 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fd | p@chr6:168251000..168251007, + |
| 6.53e-66 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fd | p@chr6:168251000..168251007, + |
| 2.98e-60 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21 | p@chr13:99135278..99135298, - |
| 2.98e-60 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21 | p@chr13:99135278..99135298, - |
| 5.01e-55 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57ed | p@chr3:69928371..69928385, + |
| 5.01e-55 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57ed | p@chr3:69928371..69928385, + |
| 7.24e-55 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87db | p@chr14:87636652..87636657, - |
| 7.24e-55 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87db | p@chr14:87636652..87636657, - |
| 1.68e-53 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6e | p@chr2:235591286..235591298, + |
| 1.68e-53 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6e | p@chr2:235591286..235591298, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6 | p@chr16:84228961..84228982, + |
| 6.39e-53 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6 | p@chr16:84228961..84228982, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6 | p5@MFRP, p6@C1QTNF5 |
| 6.39e-53 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6 | p5@MFRP, p6@C1QTNF5 |
| 9.6e-51 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230 | p3@CLIC6 |
| 9.6e-51 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230 | p3@CLIC6 |
| 1.89e-50 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569d | p7@GDPD5 |
| 1.89e-50 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569d | p7@GDPD5 |
| 7.24e-50 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295c | p4@MFRP, p5@C1QTNF5 |
| 7.24e-50 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295c | p4@MFRP, p5@C1QTNF5 |
| 6.25e-45 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1 | p@chr17:932596..932605, - |
| 6.25e-45 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1 | p@chr17:932596..932605, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p5@CYP24A1 |
| 1.22e-44 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p1@SLC16A8 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p1@SLC16A8 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p@chr17:932340..932343, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p@chr17:932340..932343, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bd | p5@CYP24A1 |
| 2.38e-44 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0 | p@chr3:98672197..98672201, + |
| 2.38e-44 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0 | p@chr3:98672197..98672201, + |
| 2.97e-44 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337a | p@chr3:183733654..183733680, - |
| 2.97e-44 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337a | p1@ENST00000437461 |
| 2.97e-44 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337a | p@chr3:183733654..183733680, - |
| 2.97e-44 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337a | p1@ENST00000437461 |
| 4.49e-44 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95 | p@chr9:140088882..140088898, - |
| 4.49e-44 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95 | p@chr9:140088882..140088898, - |
| 1.24e-43 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2 | p1@LOC100505967 |
| 1.24e-43 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2 | p1@LOC100505967 |
| 2.95e-43 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6c | p11@SIX3 |
| 2.95e-43 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6c | p11@SIX3 |
| 4.55e-43 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9 | p2@SLC45A2 |
| 4.55e-43 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9 | p2@SLC45A2 |
| 3.86e-41 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1d | p@chr16:68301840..68301845, + |
| 3.86e-41 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1d | p@chr16:68301840..68301845, + |
| 9.96e-41 | FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215 | p9@DBP |
| 9.96e-41 | FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215 | p9@DBP |
| 1.31e-40 | FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42 | p6@KRT80 |
| 1.31e-40 | FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42 | p6@KRT80 |
| 1.49e-40 | FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67 | p5@PPARGC1A |
| 1.49e-40 | FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67 | p5@PPARGC1A |
| 1.71e-40 | FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaa | p2@MFRP |
| 1.71e-40 | FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaa | p2@MFRP |
| 1.96e-40 | FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8 | p3@C1QTNF5, p3@MFRP |
| 1.96e-40 | FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8 | p3@C1QTNF5, p3@MFRP |
| 2.93e-40 | FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1e | p6@PUF60 |
| 2.93e-40 | FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1e | p6@PUF60 |
| 3.83e-40 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965 | p1@ENST00000432125 |
| 3.83e-40 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965 | p1@ENST00000432125 |
| 6.54e-40 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9cc | p6@TRPM3 |
| 6.54e-40 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9cc | p6@TRPM3 |
| 1.11e-38 | FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6 | p5@ALDH3B1 |
| 1.11e-38 | FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6 | p5@ALDH3B1 |
