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{{CL
{{CL
|id=CL:0000117
|alt_id=
|name=CNS neuron (sensu Vertebrata)
|namespace=cell
|def=
|xref=
|is_a=CL:0000540
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000337
|develops_from=CL:0000337
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000117
|is_a=CL:2000029
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=CNS neuron (sensu Vertebrata)
|namespace=cell
|obo_creation_date=
|part_of=UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:14, 12 September 2014

Name:CNS neuron (sensu Vertebrata)
Namespace:cell


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:2000029(central nervous system neuron)
develops_from:CL:0000337(neuroblast (sensu Vertebrata))
part_of:UBERON:0001017(central nervous system)



Children


is a:CL:0000120 (granule cell),FF:0000121 (central nervous system neuron),CL:0002610 (raphe nuclei neuron),CL:0002611 (neuron of the dorsal spinal cord),CL:0002612 (neuron of the ventral spinal cord),CL:0002614 (neuron of the substantia nigra),CL:0012001 (neuron of the forebrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000117 (CNS neuron (sensu Vertebrata)), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.71e-70FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_f695e620609551fb1195dc2da24dea88p@chr8:125944624..125944663, +
3.71e-70FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_f695e620609551fb1195dc2da24dea88p@chr8:125944624..125944663, +
1.29e-63FFCP PHASE2:Mm9::chr9:75414533..75414538,-#_d613dc526510dea4ecfc8b5f535d0bf4p@chr9:75414533..75414538, -
1.29e-63FFCP PHASE1:Mm9::chr9:75414533..75414538,-#_d613dc526510dea4ecfc8b5f535d0bf4p@chr9:75414533..75414538, -
3.89e-63FFCP PHASE2:Mm9::chr5:38550223..38550234,-#_a0ff801154faf004e9f0cf5f325af790p@chr5:38550223..38550234, -
3.89e-63FFCP PHASE1:Mm9::chr5:38550223..38550234,-#_a0ff801154faf004e9f0cf5f325af790p@chr5:38550223..38550234, -
4.3e-62FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_c3e22985fdbf8a8c38fc48a9f55375f2p@chr8:125944694..125944740, +
4.3e-62FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_c3e22985fdbf8a8c38fc48a9f55375f2p@chr8:125944694..125944740, +
3.77e-60FFCP PHASE2:Mm9::chr12:28025392..28025407,-#_ee96711388fa5b7e52c55826929fa366p@chr12:28025392..28025407, -
3.77e-60FFCP PHASE1:Mm9::chr12:28025392..28025407,-#_ee96711388fa5b7e52c55826929fa366p@chr12:28025392..28025407, -
1.58e-59FFCP PHASE1:Mm9::chr9:49312416..49312430,-#_e4165b7789bf6f5078629c7b6383e358p@chr9:49312416..49312430, -
1.58e-59FFCP PHASE2:Mm9::chr9:49312416..49312430,-#_e4165b7789bf6f5078629c7b6383e358p@chr9:49312416..49312430, -
7.76e-59FFCP PHASE1:Mm9::chr11:104189552..104189556,-#_654f8c05a410e016b78574a2ef2c2de5p@chr11:104189552..104189556, -
7.76e-59FFCP PHASE2:Mm9::chr11:104189552..104189556,-#_654f8c05a410e016b78574a2ef2c2de5p@chr11:104189552..104189556, -
2.27e-58FFCP PHASE2:Mm9::chr1:38851929..38851932,-#_a08f8eb7a00ed5a044c95b29994fc22ap@chr1:38851929..38851932, -
2.27e-58FFCP PHASE1:Mm9::chr1:38851929..38851932,-#_a08f8eb7a00ed5a044c95b29994fc22ap@chr1:38851929..38851932, -
4.76e-56FFCP PHASE1:Mm9::chr8:125944529..125944543,+#_2c29872b56fe42279f7cd7457154b9b2p@chr8:125944529..125944543, +
4.76e-56FFCP PHASE2:Mm9::chr8:125944529..125944543,+#_2c29872b56fe42279f7cd7457154b9b2p@chr8:125944529..125944543, +
1.06e-55FFCP PHASE1:Mm9::chr19:47098414..47098424,+#_be00884876b2c7e0fac0d175c7de70aap@chr19:47098414..47098424, +
1.06e-55FFCP PHASE2:Mm9::chr19:47098414..47098424,+#_be00884876b2c7e0fac0d175c7de70aap@chr19:47098414..47098424, +
2.68e-55FFCP PHASE1:Mm9::chr17:6106475..6106488,-#_9c4b01fc52f9ffe61c900d0c9edaee6fp@chr17:6106475..6106488, -
2.68e-55FFCP PHASE2:Mm9::chr17:6106475..6106488,-#_9c4b01fc52f9ffe61c900d0c9edaee6fp@chr17:6106475..6106488, -
5.8e-55FFCP PHASE2:Mm9::chr3:8545615..8545628,+#_f96cb540c2932ea947227c9b9cd7b0a7p@chr3:8545615..8545628, +
5.8e-55FFCP PHASE1:Mm9::chr3:8545615..8545628,+#_f96cb540c2932ea947227c9b9cd7b0a7p@chr3:8545615..8545628, +
1.61e-54FFCP PHASE2:Mm9::chr4:43455274..43455283,+#_576ccf89bdcd631ca6e0a0a978f831ecp12@Tesk1
1.61e-54FFCP PHASE1:Mm9::chr4:43455274..43455283,+#_576ccf89bdcd631ca6e0a0a978f831ecp12@Tesk1
2.57e-54FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_6acbd926339772bd57a48a2d001788dcp22@Zmiz1
2.57e-54FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_6acbd926339772bd57a48a2d001788dcp22@Zmiz1
3.64e-54FFCP PHASE1:Mm9::chr8:111061744..111061761,-#_4fa5bc05955cbb8760fc60a3c38c2b99p@chr8:111061744..111061761, -
3.64e-54FFCP PHASE2:Mm9::chr8:111061744..111061761,-#_4fa5bc05955cbb8760fc60a3c38c2b99p@chr8:111061744..111061761, -
5.16e-54FFCP PHASE2:Mm9::chr11:104182657..104182673,+#_b9e0fca8179add8e4ceb1a0b6acc9e3ap@chr11:104182657..104182673, +
5.16e-54FFCP PHASE1:Mm9::chr11:104182657..104182673,+#_b9e0fca8179add8e4ceb1a0b6acc9e3ap@chr11:104182657..104182673, +
6.04e-54FFCP PHASE2:Mm9::chr11:104163705..104163726,-#_2ca3895fe1b405130bac179ee348836ep@chr11:104163705..104163726, -
6.04e-54FFCP PHASE1:Mm9::chr11:104163705..104163726,-#_2ca3895fe1b405130bac179ee348836ep@chr11:104163705..104163726, -
3.91e-53FFCP PHASE2:Mm9::chr8:125942045..125942056,+#_b236d30395e9ddcaf5683dbcb62a029fp@chr8:125942045..125942056, +
3.91e-53FFCP PHASE1:Mm9::chr8:125942045..125942056,+#_b236d30395e9ddcaf5683dbcb62a029fp@chr8:125942045..125942056, +
3.97e-53FFCP PHASE2:Mm9::chr9:21823118..21823129,-#_ab59fe5a1b3fc0a92e8c3d702aa150c8p@chr9:21823118..21823129, -
3.97e-53FFCP PHASE1:Mm9::chr9:21823118..21823129,-#_ab59fe5a1b3fc0a92e8c3d702aa150c8p@chr9:21823118..21823129, -
5.06e-53FFCP PHASE1:Mm9::chr7:89319756..89319761,+#_fb3256bcde33841d6667cbe2887041b3p4@Sh3gl3
5.06e-53FFCP PHASE2:Mm9::chr7:89319756..89319761,+#_fb3256bcde33841d6667cbe2887041b3p4@Sh3gl3
6.62e-53FFCP PHASE2:Mm9::chr15:82123103..82123106,+#_dd67c97e3d826d492e2d4819bad023cfp@chr15:82123103..82123106, +
6.62e-53FFCP PHASE1:Mm9::chr15:82123103..82123106,+#_dd67c97e3d826d492e2d4819bad023cfp@chr15:82123103..82123106, +
7.51e-53FFCP PHASE1:Mm9::chr10:127896295..127896304,+#_03ed38adec19d3015b4b8d6ed0cd28efp6@Smarcc2
7.51e-53FFCP PHASE2:Mm9::chr10:127896295..127896304,+#_03ed38adec19d3015b4b8d6ed0cd28efp6@Smarcc2
8.0e-53FFCP PHASE2:Mm9::chr14:55593026..55593064,-#_ebadeab51f9d6e10450351c608a579f4p@chr14:55593026..55593064, -
8.0e-53FFCP PHASE1:Mm9::chr14:55593026..55593064,-#_ebadeab51f9d6e10450351c608a579f4p@chr14:55593026..55593064, -
1.15e-52FFCP PHASE1:Mm9::chr14:62912065..62912077,-#_d910efedf88a4d3d7a1392a00da7be2ep3@Dleu7
1.15e-52FFCP PHASE2:Mm9::chr14:62912065..62912077,-#_d910efedf88a4d3d7a1392a00da7be2ep3@Dleu7
1.16e-52FFCP PHASE1:Mm9::chr13:98015930..98015942,+#_34f05468b230adeec8a4412fd0d88292p@chr13:98015930..98015942, +
1.16e-52FFCP PHASE2:Mm9::chr13:98015930..98015942,+#_34f05468b230adeec8a4412fd0d88292p@chr13:98015930..98015942, +
3.34e-52FFCP PHASE2:Mm9::chr15:101676842..101676853,-#_b17f10b059c561e750e94f49e5362d09p@chr15:101676842..101676853, -
3.34e-52FFCP PHASE1:Mm9::chr15:101676842..101676853,-#_b17f10b059c561e750e94f49e5362d09p@chr15:101676842..101676853, -
7.69e-52FFCP PHASE2:Mm9::chr4:130168084..130168097,+#_3e07b4e143bc0060e902bb07e5206e86p@chr4:130168084..130168097, +
7.69e-52FFCP PHASE1:Mm9::chr4:130168084..130168097,+#_3e07b4e143bc0060e902bb07e5206e86p@chr4:130168084..130168097, +
7.85e-52FFCP PHASE2:Mm9::chr8:125941995..125942014,+#_2602b16afd0db114da8df4311f5ccf77p@chr8:125941995..125942014, +
7.85e-52FFCP PHASE1:Mm9::chr8:125941995..125942014,+#_2602b16afd0db114da8df4311f5ccf77p@chr8:125941995..125942014, +
1.06e-51FFCP PHASE2:Mm9::chr12:11889272..11889293,+#_8a642fdc5faf1a2347f8ad845b0e00f3p@chr12:11889272..11889293, +
1.06e-51FFCP PHASE1:Mm9::chr12:11889272..11889293,+#_8a642fdc5faf1a2347f8ad845b0e00f3p@chr12:11889272..11889293, +
2.38e-51FFCP PHASE2:Mm9::chr7:17200127..17200137,-#_5afe5a8df08ada0aefaddc68a112dccap11@Grlf1
2.38e-51FFCP PHASE1:Mm9::chr7:17200127..17200137,-#_5afe5a8df08ada0aefaddc68a112dccap11@Grlf1
2.67e-51FFCP PHASE2:Mm9::chr16:73045578..73045594,+#_902b84988e20840e019c990ae82eec6dp@chr16:73045578..73045594, +
2.67e-51FFCP PHASE1:Mm9::chr16:73045578..73045594,+#_902b84988e20840e019c990ae82eec6dp@chr16:73045578..73045594, +
2.03e-50FFCP PHASE2:Mm9::chr7:126328112..126328133,-#_810981836e6643a7dc738e0e7f8f7345p3@Gpr139
2.03e-50FFCP PHASE1:Mm9::chr7:126328112..126328133,-#_810981836e6643a7dc738e0e7f8f7345p3@Gpr139
1.43e-49FFCP PHASE1:Mm9::chr10:127058298..127058314,-#_3337da2dbcc03ccfbad3b068198d1496p6@Lrp1
1.43e-49FFCP PHASE2:Mm9::chr10:127058298..127058314,-#_3337da2dbcc03ccfbad3b068198d1496p6@Lrp1
1.69e-49FFCP PHASE1:Mm9::chr5:37677669..37677680,+#_63ce0f2bafb7a4db6df2729396111559p@chr5:37677669..37677680, +
1.69e-49FFCP PHASE2:Mm9::chr5:37677669..37677680,+#_63ce0f2bafb7a4db6df2729396111559p@chr5:37677669..37677680, +
1.77e-49FFCP PHASE1:Mm9::chr5:37839684..37839691,-#_bec62233b66a9b173d9a6b39a0228773p@chr5:37839684..37839691, -
1.77e-49FFCP PHASE2:Mm9::chr5:37839684..37839691,-#_bec62233b66a9b173d9a6b39a0228773p@chr5:37839684..37839691, -
2.13e-49FFCP PHASE2:Mm9::chr4:69586931..69586957,-#_f9e385410b557876d5cedea9aa57f3e4p2@ENSMUST00000120560
2.13e-49FFCP PHASE1:Mm9::chr4:69586931..69586957,-#_f9e385410b557876d5cedea9aa57f3e4p2@ENSMUST00000120560
2.32e-49FFCP PHASE2:Mm9::chr14:40284476..40284479,-#_0bfc08ee5b9a8d8b972582b1b97a2f59p@chr14:40284476..40284479, -
2.32e-49FFCP PHASE1:Mm9::chr14:40284476..40284479,-#_0bfc08ee5b9a8d8b972582b1b97a2f59p@chr14:40284476..40284479, -
4.74e-49FFCP PHASE1:Mm9::chr14:76956449..76956460,-#_413b0faf9e758e8cf93abc213cdf913cp4@Serp2
4.74e-49FFCP PHASE2:Mm9::chr14:76956449..76956460,-#_413b0faf9e758e8cf93abc213cdf913cp4@Serp2
6.8e-49FFCP PHASE2:Mm9::chr18:86880274..86880286,+#_b3a3b6721b7e9574dfec7b3dc02d4bd1p4@Cbln2
6.8e-49FFCP PHASE1:Mm9::chr18:86880274..86880286,+#_b3a3b6721b7e9574dfec7b3dc02d4bd1p4@Cbln2
7.23e-49FFCP PHASE1:Mm9::chr19:47098035..47098046,+#_924efda5fdd6a5bafd1f7b781773cc5bp@chr19:47098035..47098046, +
7.23e-49FFCP PHASE2:Mm9::chr19:47098035..47098046,+#_924efda5fdd6a5bafd1f7b781773cc5bp@chr19:47098035..47098046, +
8.09e-49FFCP PHASE1:Mm9::chr5:24104722..24104736,-#_49d7c85ffc6c0d7112b4bb5c3951d3bep9@Smarcd3
8.09e-49FFCP PHASE2:Mm9::chr5:24104722..24104736,-#_49d7c85ffc6c0d7112b4bb5c3951d3bep9@Smarcd3
8.78e-49FFCP PHASE1:Mm9::chr18:36172971..36172981,+#_0836f05b403a6b66de3ad67a4f969d71p@chr18:36172971..36172981, +
8.78e-49FFCP PHASE2:Mm9::chr18:36172971..36172981,+#_0836f05b403a6b66de3ad67a4f969d71p@chr18:36172971..36172981, +
1.04e-48FFCP PHASE2:Mm9::chr13:54676369..54676378,+#_76f3aa4635b6744b57598bf040072f61p2@Arl10
1.04e-48FFCP PHASE1:Mm9::chr13:54676369..54676378,+#_76f3aa4635b6744b57598bf040072f61p2@Arl10
1.31e-48FFCP PHASE1:Mm9::chr11:70846402..70846415,-#_7a981352311dfe903de26cb7e2ca736bp@chr11:70846402..70846415, -
1.31e-48FFCP PHASE2:Mm9::chr11:70846402..70846415,-#_7a981352311dfe903de26cb7e2ca736bp@chr11:70846402..70846415, -
4.96e-48FFCP PHASE2:Mm9::chr10:80693503..80693514,-#_bcf6afa9d3c3106d420114586ee0568cp2@Atcay
4.96e-48FFCP PHASE1:Mm9::chr10:80693503..80693514,-#_bcf6afa9d3c3106d420114586ee0568cp2@Atcay
6.4e-48FFCP PHASE1:Mm9::chr14:20694506..20694548,-#_b01a7695d4ee6326012ec1879112d5ccp@chr14:20694506..20694548, -
6.4e-48FFCP PHASE2:Mm9::chr14:20694506..20694548,-#_b01a7695d4ee6326012ec1879112d5ccp@chr14:20694506..20694548, -
1.0e-47FFCP PHASE1:Mm9::chr7:58879965..58879978,+#_2091f21815b7c3f70b7ca9c8bbd3041ep@chr7:58879965..58879978, +
1.0e-47FFCP PHASE2:Mm9::chr7:58879965..58879978,+#_2091f21815b7c3f70b7ca9c8bbd3041ep@chr7:58879965..58879978, +
1.11e-47FFCP PHASE1:Mm9::chr9:121846403..121846415,+#_d23de3a1f39d6e644539bf1b78b0698ep2@1700048O20Rik
1.11e-47FFCP PHASE2:Mm9::chr9:121846403..121846415,+#_d23de3a1f39d6e644539bf1b78b0698ep2@1700048O20Rik
1.4e-47FFCP PHASE2:Mm9::chr15:74394100..74394126,+#_0df52072847259cdd47b2611023fd353p5@Bai1
1.4e-47FFCP PHASE1:Mm9::chr15:74394100..74394126,+#_0df52072847259cdd47b2611023fd353p5@Bai1
1.65e-47FFCP PHASE1:Mm9::chr1:84692822..84692836,-#_7d84ae80adf3ddbfc226f37928dab188p10@Dner
1.65e-47FFCP PHASE2:Mm9::chr1:84692822..84692836,-#_7d84ae80adf3ddbfc226f37928dab188p10@Dner

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