Personal tools

CL:0002561: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002561
|alt_id=
|name=outer root sheath cell
|namespace=cell
|def="An epithelial cell that is part of the outer root sheath." [GOC:tfm]
|xref=
|is_a=CL:0000362;;CL:0002559
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T04:29:47Z
|def="An epithelial cell that is part of the outer root sheath." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002561
|is_a=CL:0000362 ;;CL:0002559
|is_obsolete=
|located_in=
|located_in=
|name=outer root sheath cell
|namespace=cell
|obo_creation_date=2011-03-01T04:29:47Z
|part_of=UBERON:0005942
|part_of=UBERON:0005942
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:28, 12 September 2014

Name:outer root sheath cell
Namespace:cell
Definition:"An epithelial cell that is part of the outer root sheath." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T04:29:47Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000362(epidermal cell),CL:0002559(hair follicle cell)
part_of:UBERON:0005942(hair outer root sheath)



Children


derives from:FF:0000075 (human outer root sheath cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002561 (outer root sheath cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.22e-98FFCP PHASE1:Hg19::chr3:4723000..4723006,+#_e00244269a894079eb8ae62d0fceac81p@chr3:4723000..4723006, +
4.22e-98FFCP PHASE2:Hg19::chr3:4723000..4723006,+#_e00244269a894079eb8ae62d0fceac81p@chr3:4723000..4723006, +
2.34e-79FFCP PHASE2:Hg19::chr1:8950583..8950588,+#_27644edc43098bb5bb551b7b12f80355p@chr1:8950583..8950588, +
2.34e-79FFCP PHASE1:Hg19::chr1:8950583..8950588,+#_27644edc43098bb5bb551b7b12f80355p@chr1:8950583..8950588, +
1.4e-49FFCP PHASE2:Hg19::chr1:78958342..78958353,+#_acd9a2ded41c7ee1e1f47fa3b81e772bp3@PTGFR
1.4e-49FFCP PHASE1:Hg19::chr1:78958342..78958353,+#_acd9a2ded41c7ee1e1f47fa3b81e772bp3@PTGFR
4.89e-41FFCP PHASE1:Hg19::chr13:36432199..36432209,+#_4863fa5018bfbf6e173ad9e27a1a8044p1@uc001uvi.1
4.89e-41FFCP PHASE2:Hg19::chr13:36432199..36432209,+#_4863fa5018bfbf6e173ad9e27a1a8044p1@uc001uvi.1
3.61e-34FFCP PHASE1:Hg19::chr9:97765380..97765385,-#_6ae9e1452c13dbb3a36c77464ca04e09p@chr9:97765380..97765385, -
3.61e-34FFCP PHASE2:Hg19::chr9:97765380..97765385,-#_6ae9e1452c13dbb3a36c77464ca04e09p@chr9:97765380..97765385, -
4.29e-34FFCP PHASE2:Hg19::chr7:142563953..142563963,+#_fa5a7d4caba5d13bb795f093bb6db202p@chr7:142563953..142563963, +
4.29e-34FFCP PHASE1:Hg19::chr7:142563953..142563963,+#_fa5a7d4caba5d13bb795f093bb6db202p@chr7:142563953..142563963, +
8.57e-32FFCP PHASE2:Hg19::chr3:154899522..154899536,+#_0a2311c980a9ed0f0ef2762c7131356bp@chr3:154899522..154899536, +
8.57e-32FFCP PHASE1:Hg19::chr3:154899522..154899536,+#_0a2311c980a9ed0f0ef2762c7131356bp@chr3:154899522..154899536, +
1.0e-31FFCP PHASE1:Hg19::chr4:120192715..120192730,+#_d456cbcf6e2a1d4fcd8be54a8eab76c3p@chr4:120192715..120192730, +
1.0e-31FFCP PHASE2:Hg19::chr4:120192715..120192730,+#_d456cbcf6e2a1d4fcd8be54a8eab76c3p@chr4:120192715..120192730, +
2.22e-29FFCP PHASE2:Hg19::chr3:154741907..154741918,+#_70db3bca9c6d3d4d11973f4295d81bd0p25@MME
2.22e-29FFCP PHASE1:Hg19::chr3:154741907..154741918,+#_70db3bca9c6d3d4d11973f4295d81bd0p25@MME
8.13e-28FFCP PHASE2:Hg19::chr11:121896688..121896697,-#_19531421aabcc669282d5c2723f20e11p@chr11:121896688..121896697, -
8.13e-28FFCP PHASE1:Hg19::chr11:121896688..121896697,-#_19531421aabcc669282d5c2723f20e11p@chr11:121896688..121896697, -
5.56e-26FFCP PHASE1:Hg19::chr14:92344000..92344007,-#_5fd97682794f4b1b0db78872e6497dfcp@chr14:92344000..92344007, -
5.56e-26FFCP PHASE2:Hg19::chr14:92344000..92344007,-#_5fd97682794f4b1b0db78872e6497dfcp@chr14:92344000..92344007, -
5.96e-26FFCP PHASE2:Hg19::chr19:9811125..9811144,-#_818cb060fecede852d90ab132e516a38p2@ZNF812
5.96e-26FFCP PHASE1:Hg19::chr19:9811125..9811144,-#_818cb060fecede852d90ab132e516a38p2@ZNF812
9.18e-26FFCP PHASE2:Hg19::chr8:123102017..123102025,-#_c6554a3d90ffbf7d0bff8a127814f046p@chr8:123102017..123102025, -
9.18e-26FFCP PHASE1:Hg19::chr8:123102017..123102025,-#_c6554a3d90ffbf7d0bff8a127814f046p@chr8:123102017..123102025, -
9.02e-25FFCP PHASE2:Hg19::chr5:65105892..65105924,+#_5f58474f2a758d6121a340a0d48a3b69p@chr5:65105892..65105924, +
9.02e-25FFCP PHASE1:Hg19::chr5:65105892..65105924,+#_5f58474f2a758d6121a340a0d48a3b69p@chr5:65105892..65105924, +
2.64e-24FFCP PHASE1:Hg19::chr11:86520665..86520684,+#_c767495008016c32174d5dccdddad534p@chr11:86520665..86520684, +
2.64e-24FFCP PHASE2:Hg19::chr11:86520665..86520684,+#_c767495008016c32174d5dccdddad534p@chr11:86520665..86520684, +
1.78e-23FFCP PHASE1:Hg19::chr2:38418282..38418295,+#_694a1add15e6d544468a527b088f3d9ep@chr2:38418282..38418295, +
1.78e-23FFCP PHASE2:Hg19::chr2:38418282..38418295,+#_694a1add15e6d544468a527b088f3d9ep@chr2:38418282..38418295, +
1.99e-23FFCP PHASE1:Hg19::chr3:157160884..157160892,-#_acc781350edfe65364dd4781dd28465bp@chr3:157160884..157160892, -
1.99e-23FFCP PHASE2:Hg19::chr3:112359271..112359279,+#_acc781350edfe65364dd4781dd28465bp@chr3:112359271..112359279, +
1.99e-23FFCP PHASE1:Hg19::chr3:112359271..112359279,+#_acc781350edfe65364dd4781dd28465bp@chr3:112359271..112359279, +
1.99e-23FFCP PHASE2:Hg19::chr3:157160884..157160892,-#_acc781350edfe65364dd4781dd28465bp@chr3:157160884..157160892, -
3.12e-23FFCP PHASE2:Hg19::chr6:139694564..139694581,-#_fb002fb4e3c92ebeb1d3189bca754175p13@CITED2
3.12e-23FFCP PHASE1:Hg19::chr6:139694564..139694581,-#_fb002fb4e3c92ebeb1d3189bca754175p13@CITED2
8.7e-23FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_ee6044a3afee88fcec735533b54ad5f7p@chr4:47857451..47857469, -
8.7e-23FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_ee6044a3afee88fcec735533b54ad5f7p@chr4:47857451..47857469, -
2.85e-22FFCP PHASE1:Hg19::chr3:154899435..154899447,+#_71244e49c4f09f99c8a4cdf068c18b29p@chr3:154899435..154899447, +
2.85e-22FFCP PHASE2:Hg19::chr3:154899435..154899447,+#_71244e49c4f09f99c8a4cdf068c18b29p@chr3:154899435..154899447, +
3.93e-22FFCP PHASE1:Hg19::chr19:6071270..6071281,+#_a975ab063d0efbd72144476bba2b195dp@chr19:6071270..6071281, +
3.93e-22FFCP PHASE2:Hg19::chr19:6071270..6071281,+#_a975ab063d0efbd72144476bba2b195dp@chr19:6071270..6071281, +
3.47e-21FFCP PHASE2:Hg19::chr11:1123043..1123046,-#_b34d9c531644ae0e75bc8a4705a5ef65p@chr11:1123043..1123046, -
3.47e-21FFCP PHASE1:Hg19::chr11:1123043..1123046,-#_b34d9c531644ae0e75bc8a4705a5ef65p@chr11:1123043..1123046, -
3.81e-21FFCP PHASE2:Hg19::chr7:142563227..142563251,+#_17aa36d2c7b60c3ec2c197a7c781dc69p@chr7:142563227..142563251, +
3.81e-21FFCP PHASE1:Hg19::chr7:142563227..142563251,+#_17aa36d2c7b60c3ec2c197a7c781dc69p@chr7:142563227..142563251, +
4.66e-21FFCP PHASE2:Hg19::chr15:81611431..81611434,-#_ad463a26f8acd569593fde9a64beb748p@chr15:81611431..81611434, -
4.66e-21FFCP PHASE1:Hg19::chr21:17943379..17943385,+#_ad463a26f8acd569593fde9a64beb748p@chr21:17943379..17943385, +
4.66e-21FFCP PHASE1:Hg19::chr8:108509895..108509902,-#_ad463a26f8acd569593fde9a64beb748p16@ANGPT1
4.66e-21FFCP PHASE2:Hg19::chr9:132337391..132337396,+#_ad463a26f8acd569593fde9a64beb748p2@ENST00000443993, p2@uc004bya.1
4.66e-21FFCP PHASE1:Hg19::chr9:132337391..132337396,+#_ad463a26f8acd569593fde9a64beb748p2@ENST00000443993, p2@uc004bya.1
4.66e-21FFCP PHASE2:Hg19::chr21:17943379..17943385,+#_ad463a26f8acd569593fde9a64beb748p@chr21:17943379..17943385, +
4.66e-21FFCP PHASE1:Hg19::chr15:81611431..81611434,-#_ad463a26f8acd569593fde9a64beb748p@chr15:81611431..81611434, -
4.66e-21FFCP PHASE2:Hg19::chr8:108509895..108509902,-#_ad463a26f8acd569593fde9a64beb748p16@ANGPT1
6.96e-21FFCP PHASE2:Hg19::chr19:43702360..43702371,-#_479b0e87f04d175b6d8377a52c9464e9p8@PSG4
6.96e-21FFCP PHASE1:Hg19::chr19:43702360..43702371,-#_479b0e87f04d175b6d8377a52c9464e9p8@PSG4
7.7e-21FFCP PHASE2:Hg19::chr2:96012757..96012779,+#_06e242a1455c65644b7e67fea777d07cp8@KCNIP3
7.7e-21FFCP PHASE2:Hg19::chr1:77997785..77997808,+#_06e242a1455c65644b7e67fea777d07cp12@AK5
7.7e-21FFCP PHASE1:Hg19::chr2:96012757..96012779,+#_06e242a1455c65644b7e67fea777d07cp8@KCNIP3
7.7e-21FFCP PHASE1:Hg19::chr1:77997785..77997808,+#_06e242a1455c65644b7e67fea777d07cp12@AK5
5.4e-20FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_f2819c25b743e75feb55e90b7a11856dp@chr1:65888177..65888194, +
5.4e-20FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_f2819c25b743e75feb55e90b7a11856dp@chr1:65888177..65888194, +
9.38e-20FFCP PHASE1:Hg19::chr5:75912926..75912939,-#_efcced5940c27bd13ebe7bbd0a34572fp@chr5:75912926..75912939, -
9.38e-20FFCP PHASE2:Hg19::chr5:75912926..75912939,-#_efcced5940c27bd13ebe7bbd0a34572fp@chr5:75912926..75912939, -
6.43e-19FFCP PHASE1:Hg19::chr19:6076930..6076937,+#_0d4cfdd3cd8757a02b292271daa6ef6ep@chr19:6076930..6076937, +
6.43e-19FFCP PHASE2:Hg19::chr19:6076930..6076937,+#_0d4cfdd3cd8757a02b292271daa6ef6ep@chr19:6076930..6076937, +
2.04e-18FFCP PHASE1:Hg19::chr16:89687120..89687166,+#_6f115b349b041d40af8c534f01082ad5p3@DPEP1
2.04e-18FFCP PHASE2:Hg19::chr16:89687120..89687166,+#_6f115b349b041d40af8c534f01082ad5p3@DPEP1
2.22e-18FFCP PHASE2:Hg19::chr9:118358945..118358954,+#_23e31b6606bfe074434b2021ba7aa887p@chr9:118358945..118358954, +
2.22e-18FFCP PHASE1:Hg19::chr9:118358945..118358954,+#_23e31b6606bfe074434b2021ba7aa887p@chr9:118358945..118358954, +
2.43e-18FFCP PHASE2:Hg19::chr5:39376845..39376861,-#_96bd3337c6065afe88ea5474ad730443p@chr5:39376845..39376861, -
2.43e-18FFCP PHASE1:Hg19::chr5:39376845..39376861,-#_96bd3337c6065afe88ea5474ad730443p@chr5:39376845..39376861, -
2.9e-18FFCP PHASE2:Hg19::chr2:119605374..119605377,-#_67ac6af5d622ce56fd81cbf40f7a7de5p7@EN1
2.9e-18FFCP PHASE1:Hg19::chr2:119605374..119605377,-#_67ac6af5d622ce56fd81cbf40f7a7de5p7@EN1
5.48e-18FFCP PHASE2:Hg19::chr2:230786015..230786026,-#_8dced50267431a2b3a8ade8b92e743e4p23@TRIP12
5.48e-18FFCP PHASE1:Hg19::chr2:230786015..230786026,-#_8dced50267431a2b3a8ade8b92e743e4p23@TRIP12
5.75e-18FFCP PHASE2:Hg19::chr4:24801803..24801832,+#_10fd3675f562c0ba9cbf231443db9d28p@chr4:24801803..24801832, +
5.75e-18FFCP PHASE1:Hg19::chr4:24801803..24801832,+#_10fd3675f562c0ba9cbf231443db9d28p@chr4:24801803..24801832, +
6.48e-18FFCP PHASE1:Hg19::chr12:58934549..58934562,+#_b078321876303b1841197b8933ce6233p@chr12:58934549..58934562, +
6.48e-18FFCP PHASE2:Hg19::chr12:58934549..58934562,+#_b078321876303b1841197b8933ce6233p@chr12:58934549..58934562, +
9.07e-18FFCP PHASE2:Hg19::chr9:113799720..113799726,-#_5205e79a41d9c3f7661dbc97acc86386p@chr9:113799720..113799726, -
9.07e-18FFCP PHASE2:Hg19::chr1:85987417..85987423,-#_5205e79a41d9c3f7661dbc97acc86386p44@DDAH1
9.07e-18FFCP PHASE1:Hg19::chr9:113799720..113799726,-#_5205e79a41d9c3f7661dbc97acc86386p@chr9:113799720..113799726, -
9.07e-18FFCP PHASE1:Hg19::chr1:85987417..85987423,-#_5205e79a41d9c3f7661dbc97acc86386p44@DDAH1
9.58e-18FFCP PHASE1:Hg19::chr5:149497202..149497221,+#_a1f17bd2341c24ce8e249e8fdf86b0fep@chr5:149497202..149497221, +
9.58e-18FFCP PHASE2:Hg19::chr5:149497202..149497221,+#_a1f17bd2341c24ce8e249e8fdf86b0fep@chr5:149497202..149497221, +
1.07e-17FFCP PHASE2:Hg19::chr5:172222753..172222757,+#_b09eb791aa94461d82fd3662ebb6da6bp@chr5:172222753..172222757, +
1.07e-17FFCP PHASE2:Hg19::chr4:47839519..47839528,-#_b09eb791aa94461d82fd3662ebb6da6bp4@CORIN
1.07e-17FFCP PHASE1:Hg19::chr5:172222753..172222757,+#_b09eb791aa94461d82fd3662ebb6da6bp@chr5:172222753..172222757, +
1.07e-17FFCP PHASE1:Hg19::chr4:47839519..47839528,-#_b09eb791aa94461d82fd3662ebb6da6bp4@CORIN
1.27e-17FFCP PHASE1:Hg19::chr4:178083004..178083050,-#_fcd62e575cc73d6fd3afe886239e09a4p@chr4:178083004..178083050, -
1.27e-17FFCP PHASE2:Hg19::chr12:56224522..56224535,-#_fcd62e575cc73d6fd3afe886239e09a4p7@DNAJC14
1.27e-17FFCP PHASE1:Hg19::chr12:56224522..56224535,-#_fcd62e575cc73d6fd3afe886239e09a4p7@DNAJC14
1.27e-17FFCP PHASE2:Hg19::chr4:178083004..178083050,-#_fcd62e575cc73d6fd3afe886239e09a4p@chr4:178083004..178083050, -
1.37e-17FFCP PHASE1:Hg19::chr22:45958896..45958922,+#_d27e88225db3036c7a29f2d919647259p@chr22:45958896..45958922, +
1.37e-17FFCP PHASE2:Hg19::chr22:45958896..45958922,+#_d27e88225db3036c7a29f2d919647259p@chr22:45958896..45958922, +
1.49e-17FFCP PHASE1:Hg19::chr3:57583650..57583654,+#_d12bb8c6cf56170f4e43338827037612p@chr3:57583650..57583654, +
1.49e-17FFCP PHASE2:Hg19::chr3:57583650..57583654,+#_d12bb8c6cf56170f4e43338827037612p@chr3:57583650..57583654, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002561&oldid=3272172"