Personal tools

CL:1000415: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000415
|alt_id=
|name=epithelial cell of gall bladder
|namespace=cell
|def="An epithelial cell that is part of the gallbladder." [GOC:tfm]
|xref=FMA:67780
|is_a=CL:0000066;;CL:0002371
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell that is part of the gallbladder." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000415
|is_a=CL:0000066 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=epithelial cell of gall bladder
|namespace=cell
|obo_creation_date=
|part_of=UBERON:0002110
|part_of=UBERON:0002110
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=FMA:67780
}}
}}

Revision as of 10:31, 12 September 2014

Name:epithelial cell of gall bladder
Namespace:cell
Definition:"An epithelial cell that is part of the gallbladder." [GOC:tfm]
Xrefs:
links:
FMA:67780


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)
part_of:UBERON:0002110(gallbladder)



Children


is a:FF:10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB),FF:10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Mouse (Mus musculus)

  • 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
  • 10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000415 (epithelial cell of gall bladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr10:103952998..103953003,-#_468576932cc524f05f3c21e4536e8299p@chr10:103952998..103953003, -
1.55e-98FFCP PHASE1:Hg19::chr2:42157172..42157179,-#_468576932cc524f05f3c21e4536e8299p@chr2:42157172..42157179, -
1.55e-98FFCP PHASE2:Hg19::chr3:145127555..145127558,+#_468576932cc524f05f3c21e4536e8299p@chr3:145127555..145127558, +
1.55e-98FFCP PHASE2:Hg19::chr4:117626532..117626537,+#_468576932cc524f05f3c21e4536e8299p@chr4:117626532..117626537, +
1.55e-98FFCP PHASE2:Hg19::chr18:2351233..2351242,+#_468576932cc524f05f3c21e4536e8299p@chr18:2351233..2351242, +
1.55e-98FFCP PHASE1:Hg19::chr2:42157397..42157411,-#_468576932cc524f05f3c21e4536e8299p@chr2:42157397..42157411, -
1.55e-98FFCP PHASE1:Hg19::chr4:189258158..189258183,-#_468576932cc524f05f3c21e4536e8299p@chr4:189258158..189258183, -
1.55e-98FFCP PHASE1:Hg19::chr20:4100562..4100570,+#_468576932cc524f05f3c21e4536e8299p4@BC027448
1.55e-98FFCP PHASE1:Hg19::chr5:25649889..25649911,-#_468576932cc524f05f3c21e4536e8299p@chr5:25649889..25649911, -
1.55e-98FFCP PHASE2:Hg19::chr2:42157172..42157179,-#_468576932cc524f05f3c21e4536e8299p@chr2:42157172..42157179, -
1.55e-98FFCP PHASE2:Hg19::chr9:95737958..95737978,+#_468576932cc524f05f3c21e4536e8299p@chr9:95737958..95737978, +
1.55e-98FFCP PHASE1:Hg19::chr20:4100596..4100603,+#_468576932cc524f05f3c21e4536e8299p5@BC027448
1.55e-98FFCP PHASE2:Hg19::chr2:42157397..42157411,-#_468576932cc524f05f3c21e4536e8299p@chr2:42157397..42157411, -
1.55e-98FFCP PHASE1:Hg19::chr4:117626532..117626537,+#_468576932cc524f05f3c21e4536e8299p@chr4:117626532..117626537, +
1.55e-98FFCP PHASE2:Hg19::chr20:4100562..4100570,+#_468576932cc524f05f3c21e4536e8299p4@BC027448
1.55e-98FFCP PHASE2:Hg19::chr14:38091563..38091607,+#_468576932cc524f05f3c21e4536e8299p@chr14:38091563..38091607, +
1.55e-98FFCP PHASE2:Hg19::chr10:103952998..103953003,-#_468576932cc524f05f3c21e4536e8299p@chr10:103952998..103953003, -
1.55e-98FFCP PHASE2:Hg19::chr5:25649889..25649911,-#_468576932cc524f05f3c21e4536e8299p@chr5:25649889..25649911, -
1.55e-98FFCP PHASE2:Hg19::chr4:189258158..189258183,-#_468576932cc524f05f3c21e4536e8299p@chr4:189258158..189258183, -
1.55e-98FFCP PHASE1:Hg19::chr14:38091563..38091607,+#_468576932cc524f05f3c21e4536e8299p@chr14:38091563..38091607, +
1.55e-98FFCP PHASE1:Hg19::chr18:2351233..2351242,+#_468576932cc524f05f3c21e4536e8299p@chr18:2351233..2351242, +
1.55e-98FFCP PHASE1:Hg19::chr3:145127555..145127558,+#_468576932cc524f05f3c21e4536e8299p@chr3:145127555..145127558, +
1.55e-98FFCP PHASE1:Hg19::chr9:95737958..95737978,+#_468576932cc524f05f3c21e4536e8299p@chr9:95737958..95737978, +
1.55e-98FFCP PHASE2:Hg19::chr20:4100596..4100603,+#_468576932cc524f05f3c21e4536e8299p5@BC027448
2.74e-50FFCP PHASE2:Hg19::chr18:2351165..2351175,+#_116ac61170d3bc4bc38c45adbf17f047p@chr18:2351165..2351175, +
2.74e-50FFCP PHASE2:Hg19::chr9:95737369..95737393,+#_116ac61170d3bc4bc38c45adbf17f047p18@FGD3
2.74e-50FFCP PHASE2:Hg19::chr7:114026271..114026287,-#_116ac61170d3bc4bc38c45adbf17f047p@chr7:114026271..114026287, -
2.74e-50FFCP PHASE2:Hg19::chrX:29431271..29431280,+#_116ac61170d3bc4bc38c45adbf17f047p@chrX:29431271..29431280, +
2.74e-50FFCP PHASE2:Hg19::chr19:28401158..28401162,-#_116ac61170d3bc4bc38c45adbf17f047p@chr19:28401158..28401162, -
2.74e-50FFCP PHASE2:Hg19::chr11:86501763..86501768,+#_116ac61170d3bc4bc38c45adbf17f047p33@PRSS23
2.74e-50FFCP PHASE1:Hg19::chr5:147644551..147644576,+#_116ac61170d3bc4bc38c45adbf17f047p@chr5:147644551..147644576, +
2.74e-50FFCP PHASE2:Hg19::chr18:35871337..35871346,+#_116ac61170d3bc4bc38c45adbf17f047p@chr18:35871337..35871346, +
2.74e-50FFCP PHASE2:Hg19::chr12:113448406..113448411,+#_116ac61170d3bc4bc38c45adbf17f047p14@OAS2
2.74e-50FFCP PHASE2:Hg19::chr10:124050589..124050596,+#_116ac61170d3bc4bc38c45adbf17f047p15@BTBD16
2.74e-50FFCP PHASE1:Hg19::chr21:28226981..28227000,+#_116ac61170d3bc4bc38c45adbf17f047p@chr21:28226981..28227000, +
2.74e-50FFCP PHASE2:Hg19::chr4:190861941..190861951,+#_116ac61170d3bc4bc38c45adbf17f047p3@FRG1
2.74e-50FFCP PHASE1:Hg19::chr11:86501763..86501768,+#_116ac61170d3bc4bc38c45adbf17f047p33@PRSS23
2.74e-50FFCP PHASE1:Hg19::chr12:113448406..113448411,+#_116ac61170d3bc4bc38c45adbf17f047p14@OAS2
2.74e-50FFCP PHASE1:Hg19::chr5:147645292..147645302,+#_116ac61170d3bc4bc38c45adbf17f047p@chr5:147645292..147645302, +
2.74e-50FFCP PHASE2:Hg19::chr6:13191432..13191436,-#_116ac61170d3bc4bc38c45adbf17f047p@chr6:13191432..13191436, -
2.74e-50FFCP PHASE1:Hg19::chr7:114026271..114026287,-#_116ac61170d3bc4bc38c45adbf17f047p@chr7:114026271..114026287, -
2.74e-50FFCP PHASE1:Hg19::chr10:124050589..124050596,+#_116ac61170d3bc4bc38c45adbf17f047p15@BTBD16
2.74e-50FFCP PHASE1:Hg19::chrX:29431271..29431280,+#_116ac61170d3bc4bc38c45adbf17f047p@chrX:29431271..29431280, +
2.74e-50FFCP PHASE2:Hg19::chr5:147644551..147644576,+#_116ac61170d3bc4bc38c45adbf17f047p@chr5:147644551..147644576, +
2.74e-50FFCP PHASE1:Hg19::chr17:67559529..67559532,+#_116ac61170d3bc4bc38c45adbf17f047p@chr17:67559529..67559532, +
2.74e-50FFCP PHASE2:Hg19::chr21:28226981..28227000,+#_116ac61170d3bc4bc38c45adbf17f047p@chr21:28226981..28227000, +
2.74e-50FFCP PHASE1:Hg19::chr18:2351165..2351175,+#_116ac61170d3bc4bc38c45adbf17f047p@chr18:2351165..2351175, +
2.74e-50FFCP PHASE1:Hg19::chr9:95737369..95737393,+#_116ac61170d3bc4bc38c45adbf17f047p18@FGD3
2.74e-50FFCP PHASE1:Hg19::chr4:190861941..190861951,+#_116ac61170d3bc4bc38c45adbf17f047p3@FRG1
2.74e-50FFCP PHASE1:Hg19::chr19:28401158..28401162,-#_116ac61170d3bc4bc38c45adbf17f047p@chr19:28401158..28401162, -
2.74e-50FFCP PHASE2:Hg19::chr5:147645292..147645302,+#_116ac61170d3bc4bc38c45adbf17f047p@chr5:147645292..147645302, +
2.74e-50FFCP PHASE1:Hg19::chr18:35871337..35871346,+#_116ac61170d3bc4bc38c45adbf17f047p@chr18:35871337..35871346, +
2.74e-50FFCP PHASE1:Hg19::chr6:13191432..13191436,-#_116ac61170d3bc4bc38c45adbf17f047p@chr6:13191432..13191436, -
2.74e-50FFCP PHASE2:Hg19::chr17:67559529..67559532,+#_116ac61170d3bc4bc38c45adbf17f047p@chr17:67559529..67559532, +
4.52e-50FFCP PHASE2:Hg19::chr19:36757642..36757645,+#_e26a051c8084f2ef25d2dba071625578p@chr19:36757642..36757645, +
4.52e-50FFCP PHASE1:Hg19::chr12:127102703..127102711,-#_e26a051c8084f2ef25d2dba071625578p@chr12:127102703..127102711, -
4.52e-50FFCP PHASE2:Hg19::chr2:120974061..120974068,-#_e26a051c8084f2ef25d2dba071625578p3@ENST00000455707
4.52e-50FFCP PHASE1:Hg19::chr5:37852067..37852074,-#_e26a051c8084f2ef25d2dba071625578p@chr5:37852067..37852074, -
4.52e-50FFCP PHASE2:Hg19::chr14:47289644..47289662,-#_e26a051c8084f2ef25d2dba071625578p@chr14:47289644..47289662, -
4.52e-50FFCP PHASE1:Hg19::chr16:34378161..34378168,+#_e26a051c8084f2ef25d2dba071625578p@chr16:34378161..34378168, +
4.52e-50FFCP PHASE1:Hg19::chr17:68643476..68643477,+#_e26a051c8084f2ef25d2dba071625578p@chr17:68643476..68643477, +
4.52e-50FFCP PHASE1:Hg19::chr3:106851639..106851650,-#_e26a051c8084f2ef25d2dba071625578p@chr3:106851639..106851650, -
4.52e-50FFCP PHASE1:Hg19::chr4:175184051..175184061,-#_e26a051c8084f2ef25d2dba071625578p18@FBXO8
4.52e-50FFCP PHASE1:Hg19::chr14:47289644..47289662,-#_e26a051c8084f2ef25d2dba071625578p@chr14:47289644..47289662, -
4.52e-50FFCP PHASE2:Hg19::chr18:61420303..61420306,+#_e26a051c8084f2ef25d2dba071625578p17@SERPINB7
4.52e-50FFCP PHASE2:Hg19::chr16:34378161..34378168,+#_e26a051c8084f2ef25d2dba071625578p@chr16:34378161..34378168, +
4.52e-50FFCP PHASE2:Hg19::chr6:66497726..66497737,-#_e26a051c8084f2ef25d2dba071625578p@chr6:66497726..66497737, -
4.52e-50FFCP PHASE2:Hg19::chr3:106851639..106851650,-#_e26a051c8084f2ef25d2dba071625578p@chr3:106851639..106851650, -
4.52e-50FFCP PHASE2:Hg19::chr4:175184241..175184250,-#_e26a051c8084f2ef25d2dba071625578p14@FBXO8
4.52e-50FFCP PHASE2:Hg19::chr5:37852067..37852074,-#_e26a051c8084f2ef25d2dba071625578p@chr5:37852067..37852074, -
4.52e-50FFCP PHASE2:Hg19::chr4:59982412..59982425,+#_e26a051c8084f2ef25d2dba071625578p@chr4:59982412..59982425, +
4.52e-50FFCP PHASE2:Hg19::chr17:68643476..68643477,+#_e26a051c8084f2ef25d2dba071625578p@chr17:68643476..68643477, +
4.52e-50FFCP PHASE1:Hg19::chr19:36757642..36757645,+#_e26a051c8084f2ef25d2dba071625578p@chr19:36757642..36757645, +
4.52e-50FFCP PHASE1:Hg19::chr2:120974061..120974068,-#_e26a051c8084f2ef25d2dba071625578p3@ENST00000455707
4.52e-50FFCP PHASE2:Hg19::chr4:175184051..175184061,-#_e26a051c8084f2ef25d2dba071625578p18@FBXO8
4.52e-50FFCP PHASE1:Hg19::chr6:66497726..66497737,-#_e26a051c8084f2ef25d2dba071625578p@chr6:66497726..66497737, -
4.52e-50FFCP PHASE2:Hg19::chr12:127102703..127102711,-#_e26a051c8084f2ef25d2dba071625578p@chr12:127102703..127102711, -
4.52e-50FFCP PHASE1:Hg19::chr4:175184241..175184250,-#_e26a051c8084f2ef25d2dba071625578p14@FBXO8
4.52e-50FFCP PHASE1:Hg19::chr18:61420303..61420306,+#_e26a051c8084f2ef25d2dba071625578p17@SERPINB7
4.52e-50FFCP PHASE1:Hg19::chr4:59982412..59982425,+#_e26a051c8084f2ef25d2dba071625578p@chr4:59982412..59982425, +
1.91e-44FFCP PHASE2:Hg19::chr13:55820923..55820933,+#_cc695711ad8401c6f95b54e09b519bedp@chr13:55820923..55820933, +
1.91e-44FFCP PHASE1:Hg19::chr13:55820923..55820933,+#_cc695711ad8401c6f95b54e09b519bedp@chr13:55820923..55820933, +
3.94e-37FFCP PHASE1:Hg19::chr3:153807386..153807397,-#_b9fa6213bad02519b06f324c22387650p@chr3:153807386..153807397, -
3.94e-37FFCP PHASE2:Hg19::chr3:153807386..153807397,-#_b9fa6213bad02519b06f324c22387650p@chr3:153807386..153807397, -
3.61e-34FFCP PHASE1:Hg19::chr4:146261581..146261590,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr4:146261581..146261590, -
3.61e-34FFCP PHASE1:Hg19::chr11:86501675..86501685,+#_5ee73595fdbfaa4bf8fb5c3fc773d69dp29@PRSS23
3.61e-34FFCP PHASE2:Hg19::chr11:63331619..63331629,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp7@AK025029
3.61e-34FFCP PHASE2:Hg19::chr5:84867331..84867340,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr5:84867331..84867340, -
3.61e-34FFCP PHASE1:Hg19::chr11:63331619..63331629,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp7@AK025029
3.61e-34FFCP PHASE1:Hg19::chr4:146261630..146261638,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr4:146261630..146261638, -
3.61e-34FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr8:15939682..15939688, +
3.61e-34FFCP PHASE2:Hg19::chr4:146261581..146261590,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr4:146261581..146261590, -
3.61e-34FFCP PHASE2:Hg19::chr10:73818867..73818877,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr10:73818867..73818877, -
3.61e-34FFCP PHASE1:Hg19::chr5:84867331..84867340,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr5:84867331..84867340, -
3.61e-34FFCP PHASE2:Hg19::chr4:146261630..146261638,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr4:146261630..146261638, -
3.61e-34FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr8:15939682..15939688, +
3.61e-34FFCP PHASE1:Hg19::chr10:73818867..73818877,-#_5ee73595fdbfaa4bf8fb5c3fc773d69dp@chr10:73818867..73818877, -
3.61e-34FFCP PHASE2:Hg19::chr11:86501675..86501685,+#_5ee73595fdbfaa4bf8fb5c3fc773d69dp29@PRSS23
5.04e-34FFCP PHASE1:Hg19::chr1:112084630..112084639,+#_afc86edc0d73fdc61ec1f452694b7e36p8@RAP1A
5.04e-34FFCP PHASE2:Hg19::chr5:33297946..33297962,-#_afc86edc0d73fdc61ec1f452694b7e36p1@ENST00000510327

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000415&oldid=3272243"