Personal tools

UBERON:0000078: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000078
|alt_id=
|name=mixed ectoderm/mesoderm/endoderm-derived structure
|namespace=
|def="An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
|xref=
|is_a=UBERON:0000077;;UBERON:0004121
|synonym=
|comment=Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
|comment=Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=UBERON:0000924;;UBERON:0000925;;UBERON:0000926
|develops_from=UBERON:0000924;;UBERON:0000925;;UBERON:0000926;;UBERON:0000924;;UBERON:0000925;;UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000078
|is_a=UBERON:0000077 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=mixed ectoderm/mesoderm/endoderm-derived structure
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:51, 12 September 2014

Name:mixed ectoderm/mesoderm/endoderm-derived structure
Definition:"An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
Comments:Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm),UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm)



Children

is a:UBERON:0002244 (premaxilla),UBERON:0005620 (primary palate),UBERON:0005705 (primary palate mesenchyme),UBERON:0011628 (early premaxilla)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1p@chr4:70707713..70707716, -
1.55e-98FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1p@chr8:90366581..90366594, -
1.55e-98FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1p@chr6:21648948..21648949, +
1.55e-98FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1p@chr4:70707713..70707716, -
2.74e-50FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbep@chr4:70707556..70707558, -
2.74e-50FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbep@chr4:70707556..70707558, -
4.52e-50FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671p14@FAS
4.52e-50FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671p14@FAS
4.52e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671p26@LINC00340
4.52e-50FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671p@chr3:158928407..158928414, +
4.52e-50FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671p@chr8:120651826..120651840, -
4.52e-50FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671p@chrX:23072856..23072859, -
4.52e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671p26@LINC00340
4.52e-50FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671p@chr8:120651826..120651840, -
3.61e-34FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508cp@chr4:70707608..70707615, -
3.61e-34FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508cp@chr4:70707608..70707615, -
5.04e-34FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr11:131614903..131614910, -
5.04e-34FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr17:76824975..76824978, -
5.04e-34FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr3:156258392..156258395, -
5.04e-34FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45p@chr4:70690584..70690589, +
5.04e-34FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr3:156258392..156258395, -
5.04e-34FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr11:131614903..131614910, -
5.04e-34FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45p@chr4:70690584..70690589, +
5.04e-34FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45p@chr17:76824975..76824978, -
7.05e-34FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:38147484..38147500, -
7.05e-34FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chrX:140904171..140904173, +
7.05e-34FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr8:134047162..134047169, +
7.05e-34FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647cep1@ENST00000406333
7.05e-34FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr9:16059821..16059828, +
7.05e-34FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647cep13@PTGIS
7.05e-34FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647cep13@PTGIS
7.05e-34FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:22687639..22687644, +
7.05e-34FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:24645959..24645967, +
7.05e-34FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647cep1@CACNG8
7.05e-34FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chrX:140904171..140904173, +
7.05e-34FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647cep19@AMOTL1
7.05e-34FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr13:38136724..38136726, +
7.05e-34FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647cep1@CACNG8
7.05e-34FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr9:16059821..16059828, +
7.05e-34FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:38147484..38147500, -
7.05e-34FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:93043102..93043113, -
7.05e-34FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:93043102..93043113, -
7.05e-34FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647cep19@AMOTL1
7.05e-34FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647cep1@ENST00000406333
7.05e-34FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:18834859..18834879, -
7.05e-34FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr4:24645959..24645967, +
7.05e-34FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr13:38136724..38136726, +
7.05e-34FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr8:134047162..134047169, +
7.05e-34FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:22687639..22687644, +
7.05e-34FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:176668544..176668553, +
7.05e-34FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647cep@chr1:176668544..176668553, +
7.05e-34FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647cep@chr7:18834859..18834879, -
5.56e-26FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59fp@chr9:33797893..33797903, +
5.56e-26FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59fp@chr9:33797893..33797903, +
7.14e-26FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89p16@HMGA1
7.14e-26FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89p13@RAB11FIP5
7.14e-26FFCP PHASE2:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr8:123580995..123581003, -
7.14e-26FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@ENST00000492301
7.14e-26FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89p13@RAB11FIP5
7.14e-26FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr17:61995172..61995199, -
7.14e-26FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89p16@HMGA1
7.14e-26FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@ENST00000492301
7.14e-26FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr18:65175930..65175941, +
7.14e-26FFCP PHASE1:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr4:891819..891820, -
7.14e-26FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@SNORD105
7.14e-26FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr19:15509437..15509442, -
7.14e-26FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89p@chr8:123580995..123581003, -
7.14e-26FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89p1@SNORD105
9.18e-26FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509p@chr9:33797981..33798005, -
9.18e-26FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:238116338..238116342, -
9.18e-26FFCP PHASE1:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509p@chr15:71371688..71371691, -
9.18e-26FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509p@chr6:148593641..148593643, +
9.18e-26FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509p5@BC031228
9.18e-26FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509p@chr3:11675748..11675759, -
9.18e-26FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509p@chr5:146890197..146890224, -
9.18e-26FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509p1@ENST00000521989
9.18e-26FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_c5f7f709704ba344e2f679ac9265a509p28@ANK2
9.18e-26FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509p@chr15:71371688..71371691, -
9.18e-26FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509p5@BC031228
9.18e-26FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509p@chr4:74392579..74392583, +
9.18e-26FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509p10@FAM92A1
9.18e-26FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:84316409..84316414, -
9.18e-26FFCP PHASE2:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509p@chr19:681941..681952, +
9.18e-26FFCP PHASE1:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509p@chr1:185703364..185703371, -
9.18e-26FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509p@chr6:148593641..148593643, +
9.18e-26FFCP PHASE1:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509p@chr19:681941..681952, +
9.18e-26FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509p@chr2:238116338..238116342, -
9.18e-26FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509p@chr1:185703364..185703371, -
9.18e-26FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509p@chr9:33797981..33798005, -
9.18e-26FFCP PHASE2:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509p10@FAM92A1
9.18e-26FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509p1@ENST00000521989
9.18e-26FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509p@chr4:74392579..74392583, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000078&oldid=3273739"