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{{UBERON
{{UBERON
|id=UBERON:0002757
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
|name=regional part of epithalamus
|namespace=
|def="A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
|xref=FMA:62013;;NIF_GrossAnatomy:birnlex_1607
|is_a=UBERON:0002784
|synonym="anatomical structure of brain of epithalamus" EXACT [OBOL:automatic];;"biological structure of brain of epithalamus" EXACT [OBOL:automatic];;"brain anatomical structure of epithalamus" EXACT [OBOL:automatic];;"brain biological structure of epithalamus" EXACT [OBOL:automatic];;"epithalamus anatomical structure of brain" EXACT [OBOL:automatic];;"epithalamus biological structure of brain" EXACT [OBOL:automatic];;"epithalamus brain anatomical structure" EXACT [OBOL:automatic];;"epithalamus brain biological structure" EXACT [OBOL:automatic];;"epithalamus neuraxis segment" EXACT [OBOL:automatic];;"epithalamus regional part of brain" EXACT [OBOL:automatic];;"epithalamus segment" EXACT [FMA:62013];;"epithalamus segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of epithalamus" EXACT [OBOL:automatic];;"regional part of brain of epithalamus" EXACT [OBOL:automatic];;"segment of brain of epithalamus" EXACT [OBOL:automatic];;"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002757
|is_a=UBERON:0002784
|is_obsolete=
|located_in=
|located_in=
|name=regional part of epithalamus
|namespace=
|obo_creation_date=
|part_of=UBERON:0001899
|part_of=UBERON:0001899
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anatomical structure of brain of epithalamus" EXACT [OBOL:automatic];;"biological structure of brain of epithalamus" EXACT [OBOL:automatic];;"brain anatomical structure of epithalamus" EXACT [OBOL:automatic];;"brain biological structure of epithalamus" EXACT [OBOL:automatic];;"epithalamus anatomical structure of brain" EXACT [OBOL:automatic];;"epithalamus biological structure of brain" EXACT [OBOL:automatic];;"epithalamus brain anatomical structure" EXACT [OBOL:automatic];;"epithalamus brain biological structure" EXACT [OBOL:automatic];;"epithalamus neuraxis segment" EXACT [OBOL:automatic];;"epithalamus regional part of brain" EXACT [OBOL:automatic];;"epithalamus segment" EXACT [FMA:62013];;"epithalamus segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of epithalamus" EXACT [OBOL:automatic];;"regional part of brain of epithalamus" EXACT [OBOL:automatic];;"segment of brain of epithalamus" EXACT [OBOL:automatic];;"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
|union_of=
|xref=FMA:62013;;NIF_GrossAnatomy:birnlex_1607
}}
}}

Revision as of 11:19, 12 September 2014

Name:regional part of epithalamus
Definition:"A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62013

NIF_GrossAnatomy:birnlex_1607
Synonyms: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
"biological structure of brain of epithalamus" EXACT [OBOL:automatic]
"brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
"brain biological structure of epithalamus" EXACT [OBOL:automatic]
"epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
"epithalamus biological structure of brain" EXACT [OBOL:automatic]
"epithalamus brain anatomical structure" EXACT [OBOL:automatic]
"epithalamus brain biological structure" EXACT [OBOL:automatic]
"epithalamus neuraxis segment" EXACT [OBOL:automatic]
"epithalamus regional part of brain" EXACT [OBOL:automatic]
"epithalamus segment" EXACT [FMA:62013]
"epithalamus segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of epithalamus" EXACT [OBOL:automatic]
"regional part of brain of epithalamus" EXACT [OBOL:automatic]
"segment of brain of epithalamus" EXACT [OBOL:automatic]
"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001899(epithalamus)



Children

is a:UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178350..9178369, -
3.29e-195FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbep6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbep4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_9fff67266e304a13f2133c4d8e21ddbep9@LOC100507050
3.29e-195FFCP PHASE1:Hg19::chr10:18580269..18580290,+#_9fff67266e304a13f2133c4d8e21ddbep@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_9fff67266e304a13f2133c4d8e21ddbep2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782665..9782674, +
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbep@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbep@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbep11@SRRM3
3.29e-195FFCP PHASE1:Hg19::chr11:84530787..84530803,+#_9fff67266e304a13f2133c4d8e21ddbep@chr11:84530787..84530803, +
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr11:18063707..18063720,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18063707..18063720, -
3.29e-195FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57907030..57907050, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860786..99860791, -
3.29e-195FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135499228..135499260, -
3.29e-195FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_9fff67266e304a13f2133c4d8e21ddbep16@ZFAT
3.29e-195FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422858..55422866, +
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbep@chr2:4224059..4224062, -
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:120842768..120842790, -
3.29e-195FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:101038595..101038604, -
3.29e-195FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067959..18067962, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbep8@SLC5A7
3.29e-195FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:204667243..204667248, +
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504353..135504365, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_9fff67266e304a13f2133c4d8e21ddbep@chr9:137539895..137539904, +
3.29e-195FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:60826120..60826127, +
3.29e-195FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:107545606..107545631, -
3.29e-195FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18036005..18036011, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473063..135473075, -
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:129084265..129084288, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbep15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18039672..18039678, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473876..135473885, -
3.29e-195FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_9fff67266e304a13f2133c4d8e21ddbep10@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135521466..135521470, +
3.29e-195FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:50898098..50898107, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041199..18041200, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782665..9782674, +
3.29e-195FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_9fff67266e304a13f2133c4d8e21ddbep@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbep11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:81859007..81859036, +
3.29e-195FFCP PHASE2:Hg19::chr12:55422293..55422300,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:55422293..55422300, +
3.29e-195FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:17930871..17930877, -
3.29e-195FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbep3@NEUROG1
3.29e-195FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860786..99860791, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504337..135504342, -
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_9fff67266e304a13f2133c4d8e21ddbep2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbep2@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbep@chr6:33087873..33087886, -
3.29e-195FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbep9@PRR16
3.29e-195FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473748..135473753, -
3.29e-195FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:1210506..1210513, -
3.29e-195FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18042584..18042593, -
3.29e-195FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_9fff67266e304a13f2133c4d8e21ddbep@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751931..87751947, -
3.29e-195FFCP PHASE1:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbep3@WNT16
3.29e-195FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650541..52650548, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_9fff67266e304a13f2133c4d8e21ddbep@chr9:92310419..92310432, +
3.29e-195FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbep@chr4:1188439..1188454, -
3.29e-195FFCP PHASE2:Hg19::chr12:49621658..49621666,+#_9fff67266e304a13f2133c4d8e21ddbep21@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr11:18063707..18063720,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18063707..18063720, -
3.29e-195FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:45782001..45782009, +
3.29e-195FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_9fff67266e304a13f2133c4d8e21ddbep1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041206..18041211, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_9fff67266e304a13f2133c4d8e21ddbep35@DMD
3.29e-195FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:72297712..72297715, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066319..18066337, -
3.29e-195FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbep@chr5:136699666..136699696, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952420..54952425, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033417..99033423,+#_9fff67266e304a13f2133c4d8e21ddbep17@MATN2
3.29e-195FFCP PHASE2:Hg19::chr18:56962131..56962138,-#_9fff67266e304a13f2133c4d8e21ddbep@chr18:56962131..56962138, -
3.29e-195FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_9fff67266e304a13f2133c4d8e21ddbep28@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:56582028..56582062, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_9fff67266e304a13f2133c4d8e21ddbep@chr12:99734965..99734976, -
3.29e-195FFCP PHASE1:Hg19::chr9:37692930..37692936,+#_9fff67266e304a13f2133c4d8e21ddbep@chr9:37692930..37692936, +
3.29e-195FFCP PHASE1:Hg19::chr8:135515989..135515991,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515989..135515991, +
3.29e-195FFCP PHASE2:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18039672..18039678, -
3.29e-195FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:13820103..13820109, +
3.29e-195FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbep@chr6:33087873..33087886, -
3.29e-195FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17064630..17064651, +
3.29e-195FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860883..99860921, -
3.29e-195FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbep3@WNT16
3.29e-195FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:56628548..56628553, -
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:108616342..108616384, +
3.29e-195FFCP PHASE1:Hg19::chr8:99033409..99033415,+#_9fff67266e304a13f2133c4d8e21ddbep16@MATN2

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