FFCP PHASE1:Hg19::chr3:186383792..186383809,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 9: | Line 9: | ||
|ontology_enrichment_celltype=CL:0000181!1.13e-10!12;CL:0000417!1.13e-10!12;CL:0000668!1.13e-10!12;CL:0000414!1.13e-10!12;CL:0000412!1.13e-10!12;CL:0000182!1.13e-10!12 | |ontology_enrichment_celltype=CL:0000181!1.13e-10!12;CL:0000417!1.13e-10!12;CL:0000668!1.13e-10!12;CL:0000414!1.13e-10!12;CL:0000412!1.13e-10!12;CL:0000182!1.13e-10!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;4.34e-10;12 | |ontology_enrichment_celltype_v019=CL:0000182;4.34e-10;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.34e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0003104;5.33e-10;31!UBERON:0007297;2.25e-07;2 | |ontology_enrichment_development_v019=UBERON:0003104;5.33e-10;31!UBERON:0007297;2.25e-07;2 | ||
|ontology_enrichment_disease=DOID:114!1.73e-16!2;DOID:178!4.54e-09!1;DOID:326!4.54e-09!1;DOID:3978!4.54e-09!1;DOID:3394!4.54e-09!1;DOID:5844!4.54e-09!1;DOID:1287!1.07e-08!4 | |ontology_enrichment_disease=DOID:114!1.73e-16!2;DOID:178!4.54e-09!1;DOID:326!4.54e-09!1;DOID:3978!4.54e-09!1;DOID:3394!4.54e-09!1;DOID:5844!4.54e-09!1;DOID:1287!1.07e-08!4 | ||
|ontology_enrichment_disease_v019=DOID:114;2.69e-25;2!DOID:178;1.83e-13;1!DOID:326;1.83e-13;1!DOID:3978;1.83e-13;1!DOID:3394;1.83e-13;1!DOID:5844;1.83e-13;1!DOID:1287;3.64e-13;4 | |ontology_enrichment_disease_v019=DOID:114;2.69e-25;2!DOID:178;1.83e-13;1!DOID:326;1.83e-13;1!DOID:3978;1.83e-13;1!DOID:3394;1.83e-13;1!DOID:5844;1.83e-13;1!DOID:1287;3.64e-13;4 | ||
|ontology_enrichment_disease_v019_2=DOID:114,2.37e-25,2;DOID:178,1.61e-13,1;DOID:326,1.61e-13,1;DOID:3978,1.61e-13,1;DOID:3394,1.61e-13,1;DOID:5844,1.61e-13,1;DOID:1287,3.42e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0005057!4.06e-18!26;UBERON:0002107!1.66e-14!19;UBERON:0006925!1.66e-14!19;UBERON:0008836!1.66e-14!19;UBERON:0002368!3.85e-13!35;UBERON:0005172!1.37e-12!55;UBERON:0005173!1.37e-12!55;UBERON:0008835!1.84e-12!22;UBERON:0003894!1.84e-12!22;UBERON:0009854!6.73e-12!23;UBERON:0002417!3.43e-11!61;UBERON:0000916!3.43e-11!61;UBERON:0007499!6.61e-11!25;UBERON:0009497!6.61e-11!25;UBERON:0000015!6.61e-11!25;UBERON:0002423!6.61e-11!25;UBERON:0006235!6.61e-11!25;UBERON:0004161!6.61e-11!25;UBERON:0009856!1.82e-10!26;UBERON:0003929!2.85e-10!54;UBERON:0000949!5.57e-10!45;UBERON:0002146!4.19e-09!1;UBERON:0005623!4.19e-09!1;UBERON:0001301!4.91e-09!1;UBERON:0007023!7.02e-09!115;UBERON:0007190!7.85e-09!1;UBERON:0002365!1.08e-08!31;UBERON:0002330!1.08e-08!31;UBERON:0002336!1.16e-08!1;UBERON:0001018!1.16e-08!1;UBERON:0002473!1.16e-08!1;UBERON:0005340!1.16e-08!1;UBERON:0002316!1.16e-08!1;UBERON:0003544!1.16e-08!1;UBERON:0001020!1.16e-08!1;UBERON:0005970!1.16e-08!1;UBERON:0002437!1.16e-08!1;UBERON:0002530!2.35e-07!59;UBERON:0005177!6.13e-07!107 | |ontology_enrichment_uberon=UBERON:0005057!4.06e-18!26;UBERON:0002107!1.66e-14!19;UBERON:0006925!1.66e-14!19;UBERON:0008836!1.66e-14!19;UBERON:0002368!3.85e-13!35;UBERON:0005172!1.37e-12!55;UBERON:0005173!1.37e-12!55;UBERON:0008835!1.84e-12!22;UBERON:0003894!1.84e-12!22;UBERON:0009854!6.73e-12!23;UBERON:0002417!3.43e-11!61;UBERON:0000916!3.43e-11!61;UBERON:0007499!6.61e-11!25;UBERON:0009497!6.61e-11!25;UBERON:0000015!6.61e-11!25;UBERON:0002423!6.61e-11!25;UBERON:0006235!6.61e-11!25;UBERON:0004161!6.61e-11!25;UBERON:0009856!1.82e-10!26;UBERON:0003929!2.85e-10!54;UBERON:0000949!5.57e-10!45;UBERON:0002146!4.19e-09!1;UBERON:0005623!4.19e-09!1;UBERON:0001301!4.91e-09!1;UBERON:0007023!7.02e-09!115;UBERON:0007190!7.85e-09!1;UBERON:0002365!1.08e-08!31;UBERON:0002330!1.08e-08!31;UBERON:0002336!1.16e-08!1;UBERON:0001018!1.16e-08!1;UBERON:0002473!1.16e-08!1;UBERON:0005340!1.16e-08!1;UBERON:0002316!1.16e-08!1;UBERON:0003544!1.16e-08!1;UBERON:0001020!1.16e-08!1;UBERON:0005970!1.16e-08!1;UBERON:0002437!1.16e-08!1;UBERON:0002530!2.35e-07!59;UBERON:0005177!6.13e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.29e-16;19!UBERON:0006925;1.29e-16;19!UBERON:0002146;1.25e-13;1!UBERON:0005623;1.25e-13;1!UBERON:0001301;1.83e-13;1!UBERON:0002423;1.27e-12;25!UBERON:0005172;2.23e-10;52!UBERON:0005173;2.23e-10;52!UBERON:0002365;3.69e-10;31!UBERON:0002330;3.69e-10;31!UBERON:0002368;7.98e-09;33!UBERON:0002417;3.40e-07;58!UBERON:0000916;3.40e-07;58 | |ontology_enrichment_uberon_v019=UBERON:0002107;1.29e-16;19!UBERON:0006925;1.29e-16;19!UBERON:0002146;1.25e-13;1!UBERON:0005623;1.25e-13;1!UBERON:0001301;1.83e-13;1!UBERON:0002423;1.27e-12;25!UBERON:0005172;2.23e-10;52!UBERON:0005173;2.23e-10;52!UBERON:0002365;3.69e-10;31!UBERON:0002330;3.69e-10;31!UBERON:0002368;7.98e-09;33!UBERON:0002417;3.40e-07;58!UBERON:0000916;3.40e-07;58 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,1.18e-17,54;UBERON:0005173,1.18e-17,54;UBERON:0002107,1.29e-16,19;UBERON:0006925,1.29e-16,19;UBERON:0008836,1.29e-16,19;UBERON:0002417,8.62e-16,60;UBERON:0000916,8.62e-16,60;UBERON:0008835,2.39e-14,22;UBERON:0003894,2.39e-14,22;UBERON:0009854,1.01e-13,23;UBERON:0002146,1.42e-13,1;UBERON:0005623,1.42e-13,1;UBERON:0001301,1.83e-13,1;UBERON:0007499,1.27e-12,25;UBERON:0009497,1.27e-12,25;UBERON:0000015,1.27e-12,25;UBERON:0002423,1.27e-12,25;UBERON:0006235,1.27e-12,25;UBERON:0004161,1.27e-12,25;UBERON:0009856,3.90e-12,26;UBERON:0002365,3.62e-10,31;UBERON:0002330,3.62e-10,31;UBERON:0002368,5.39e-09,35;UBERON:0005177,5.77e-09,101;UBERON:0009569,5.58e-08,112;UBERON:0000949,5.70e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44815036960246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1297.97155657555,725.326485908088,340.88577615517,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1586.83157937492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1559.02134086346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.5893063203801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29160424011684,0,1.99679000498991,2.57535628881943,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,5.75281663284147,2.7800931711549,0,0,0,0,0,0,0,0,0,0,0,0,0,2966.8034185791,39.7520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35361564744512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.44815036960246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1297.97155657555,725.326485908088,340.88577615517,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1586.83157937492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1559.02134086346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,44.5893063203801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57254001417827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29160424011684,0,1.99679000498991,2.57535628881943,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,5.75281663284147,2.7800931711549,0,0,0,0,0,0,0,0,0,0,0,0,0,2966.8034185791,39.7520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35361564744512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0.124149428591716,0,0.12729431655633,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@HRG | |short_description=p1@HRG | ||
}} | }} |
Revision as of 16:05, 19 November 2012
Short description: | p1@HRG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_HRG_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_NM_000412, uc003fqq.2_5end |
EntrezGene: | HRG |
HGNC: | 5181 |
UniProt: | P04196 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.34e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 1.18e-17 | 54 |
abdominal segment element | 1.18e-17 | 54 |
liver | 1.29e-16 | 19 |
digestive gland | 1.29e-16 | 19 |
liver bud | 1.29e-16 | 19 |
abdominal segment of trunk | 8.62e-16 | 60 |
abdomen | 8.62e-16 | 60 |
hepatic diverticulum | 2.39e-14 | 22 |
liver primordium | 2.39e-14 | 22 |
digestive tract diverticulum | 1.01e-13 | 23 |
pulmonary valve | 1.42e-13 | 1 |
semi-lunar valve | 1.42e-13 | 1 |
epididymis | 1.83e-13 | 1 |
epithelial sac | 1.27e-12 | 25 |
epithelium of foregut-midgut junction | 1.27e-12 | 25 |
anatomical boundary | 1.27e-12 | 25 |
hepatobiliary system | 1.27e-12 | 25 |
foregut-midgut junction | 1.27e-12 | 25 |
septum transversum | 1.27e-12 | 25 |
sac | 3.90e-12 | 26 |
exocrine gland | 3.62e-10 | 31 |
exocrine system | 3.62e-10 | 31 |
endocrine gland | 5.39e-09 | 35 |
trunk region element | 5.77e-09 | 101 |
subdivision of trunk | 5.58e-08 | 112 |
endocrine system | 5.70e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
heart disease | 2.37e-25 | 2 |
vascular disease | 1.61e-13 | 1 |
ischemia | 1.61e-13 | 1 |
extrinsic cardiomyopathy | 1.61e-13 | 1 |
myocardial ischemia | 1.61e-13 | 1 |
myocardial infarction | 1.61e-13 | 1 |
cardiovascular system disease | 3.42e-13 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.