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MacroAPE 1083:CACGAAG,motif790: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;511.5;987.35;49.6;1.55!2;1545.35;1.55;1.55;1.55!3;516.15;978.05;1.55;54.25!4;1.55;1.55;1545.35;1.55!5;1545.35;1.55;1.55;1.55!6;1545.35;1.55;...")
 
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!10827-111C8;0.0862815!10789-110H6;0.176472!10828-111C9;0.306812!10788-110H5;0.489949!10792-110H9;0.0576087!10765-110E9;0.285195!10829-111D1;0.463503!10830-111D2;0.41115!10831-111D3;0.558905!10832-111D4;0.76093!10833-111D5;0.437941!10764-110E8;0.418495!10770-110F5;0.463938!10399-106A3;0.494124!10400-106A4;0.611111!10405-106A9;0.741439!10834-111D6;0.480921!10835-111D7;0.987216!10836-111D8;0.0168141!10837-111D9;0.152098!10699-109G6;0.24044!10802-111A1;0.0134605!10796-110I4;0.041599!10010-101C1;0.702994!10810-111A9;0.214339!10421-106C7;0.757412!10708-109H6;0.405722!12235-129G3;0.64445!12236-129G4;0.733417!12237-129G5;0.313685!10167-103B5;0.319541!10151-102I7;0.027323!10428-106D5;0.00622919!10795-110I3;0.837017!10805-111A4;0.0724071!10052-101G7;0.951295!10189-103D9;0.188061!10589-108D4;0.741853!10425-106D2;0.78761!10427-106D4;0.574903!10702-109G9;0.224009!10432-106D9;0.748581!10496-107C1;0.967496!10718-109I7;0.330323!10011-101C2;0.38246!10053-101G8;0.0786509!10686-109F2;0.958141!10084-102B3;0.0250196!10012-101C3;0.0115148!10085-102B4;0.0143849!10482-107A5;0.0703316!10419-106C5;0.653196!10080-102A8;0.587828!10760-110E4;0.0535553!10709-109H7;0.457463!10710-109H8;0.572012!10703-109H1;0.260533!10719-109I8;0.773545!10642-109A3;0.173707!10177-103C6;0.581357!10164-103B2;0.00645782!10173-103C2;0.00557245!10166-103B4;0.104311!10083-102B2;0.0565736!10188-103D8;0.0816733!10552-107I3;0.0253204!10553-107I4;0.679596!10013-101C4;0.954888!10536-107G5;0.108242!10618-108G6;0.621625!10423-106C9;0.152754!10785-110H2;0.761119!12238-129G6;0.895401!12239-129G7;0.222302!12240-129G8;0.981551!10416-106C2;0.284723!10801-110I9;0.0343325!10766-110F1;0.692969!10824-111C5;0.436401!10825-111C6;0.472505!10826-111C7;0.54843!10454-106G4;0.551449!10409-106B4;0.579588!10638-108I8;0.129555!10636-108I6;0.611107!10513-107D9;0.405882!10420-106C6;0.898146!10082-102B1;0.693329!10014-101C5;0.272726!10070-101I7;0.0764895!10452-106G2;0.0680933!10453-106G3;0.0829469!10449-106F8;0.0858072!10042-101F6;0.0775315!10069-101I6;0.000366014!10193-103E4;0.54862!10631-108I1;0.00864111!10438-106E6;0.00399067!10488-107B2;0.877252!10196-103E7;0.841619!10071-101I8;0.131278!10071-101I8;0.137648!10041-101F5;0.122303!10451-106G1;0.186985!10450-106F9;0.529806!10604-108F1;0.962691!10605-108F2;0.906596!10606-108F3;0.864203!10603-108E9;0.596126!10497-107C2;0.878801!10448-106F7;0.993783!10643-109A4;0.7969!10426-106D3;0.581116!10431-106D8;0.577073!10197-103E8;0.757013!10443-106F2;0.19403!10815-111B5;0.309663!10816-111B6;0.290005!10817-111B7;0.278113!10015-101C6;0.326533!10410-106B5;0.230044!10054-101G9;0.950773!10758-110E2;0.0862685!10711-109H9;0.36838!10040-101F4;0.0132645!10470-106I2;0.0355376!10415-106C1;0.538719!10198-103E9;0.99152!10614-108G2;0.45891!10612-108F9;0.385459!10549-107H9;0.539986!10615-108G3;0.675047!10487-107B1;0.266675!10433-106E1;0.552782!10688-109F4;0.544298!10444-106F3;0.679144!10444-106F3;0.667306!10485-107A8;0.647521!10413-106B8;0.782145!10175-103C4;0.819443!10161-103A8;0.00296952!12131-128D7;4.00614e-05!10624-108H3;0.498548!10712-109I1;0.662746!10205-103F7;0.030143!10206-103F8;0.191163!10207-103F9;0.253587!10050-101G5;0.17519!10051-101G6;0.340595!10016-101C7;0.295205!10046-101G1;0.114517!10778-110G4;0.378676!10633-108I3;0.619913!10818-111B8;0.959003!10819-111B9;0.778117!10820-111C1;0.741809!10484-107A7;0.761942!10808-111A7;0.988927!10169-103B7;0.0197738!10153-102I9;0.0180354!13425-144D5;0.00250725!13433-144E4;0.801635!13437-144E8;0.650522!11904-125F5;0.451771!11905-125F6;0.815208!10039-101F3;0.490847!10791-110H8;0.0224276!10017-101C8;0.48432!10045-101F9;0.00237704!10509-107D5;0.0915417!10839-111E2;0.47741!10692-109F8;0.801007!10079-102A7;0.980104!10078-102A6;0.142519!10721-110A1;0.207067!10569-108B2;0.662484!10570-108B3;0.781606!10571-108B4;0.708752!10647-109A8;0.396415!10752-110D5;0.686163!10782-110G8;0.396403!10726-110A6;0.487842!10018-101C9;0.925365!10086-102B5;0.017682!10182-103D2;0.618068!10165-103B3;0.00702085!10499-107C4;0.00107815!10408-106B3;0.889703!10019-101D1;0.206147!10068-101I5;0.297191!10075-102A3;0.30635!10077-102A5;0.277041!10727-110A7;0.586867!10775-110G1;0.0484449!10412-106B7;0.0237795!12231-129F8;0.904588!12232-129F9;0.0200113!12233-129G1;0.0321066!12234-129G2;0.00568424!10414-106B9;0.0110336!10170-103B8;0.877173!10183-103D3;0.0620178!10150-102I6;0.119057!10174-103C3;0.0166659!10155-103A2;0.00348006!10038-101F2;0.000150842!10838-111E1;0.000548093!10759-110E3;0.621389!10514-107E1;0.837457!10465-106H6;0.508423!10691-109F7;0.434054!10843-111E6;0.918879!10844-111E7;0.709303!11747-123G1;0.645108!11748-123G2;0.190387!11749-123G3;0.211181!11750-123G4;0.584058!11751-123G5;0.669197!11840-124H4;0.727556!11752-123G6;0.719203!11753-123G7;0.474544!11754-123G8;0.876898!11755-123G9;0.102692!11756-123H1;0.0316077!11833-124G6;0.036479!11760-123H5;0.275701!11836-124G9;0.0758013!11758-123H3;0.193169!11835-124G8;0.592604!11762-123H7;0.948192!11838-124H2;0.380135!11757-123H2;0.950823!11759-123H4;0.133521!11761-123H6;0.0642717!11842-124H6;0.501995!11837-124H1;0.217584!10568-108B1;0.549142!13230-141I8;0.664093!13231-141I9;0.324683!10696-109G3;0.580952!10493-107B7;0.390053!10494-107B8;0.653438!10850-111F4;0.847303!10851-111F5;0.414489!10852-111F6;0.47664!10853-111F7;0.874644!10854-111F8;0.385167!10855-111F9;0.438276!10856-111G1;0.480437!10847-111F1;0.73008!10846-111E9;0.65784!10848-111F2;0.604135!10845-111E8;0.821703!10857-111G2;0.512095!10858-111G3;0.880516!10156-103A3;0.891825!11901-125F2;0.0183973!11902-125F3;0.464015!11903-125F4;0.779662!10689-109F5;0.885705!10648-109A9;0.603204!10784-110H1;0.608798!10744-110C6;0.831087!10772-110F7;0.443015!10474-106I6;0.463037!10600-108E6;0.418858!10684-109E9;0.441992!12226-129F3;0.123823!12227-129F4;0.912875!10508-107D4;0.03332!10539-107G8;0.773444!10607-108F4;0.902337!10555-107I6;0.994877!10774-110F9;0.60822!10637-108I7;0.796157!10663-109C6;0.989162!10728-110A8;0.47144!10729-110A9;0.951717!10430-106D7;0.149505!10730-110B1;0.0299105!10813-111B3;0.973262!10812-111B2;0.404776!10037-101F1;0.827357!10172-103C1;0.0111884!10163-103B1;0.0559043!10076-102A4;0.00787467!10073-102A1;0.0390981!10036-101E9;0.116323!10195-103E6;0.0285005!10277-104E7;0.0199882!10434-106E2;0.000294838!10550-107I1;0.677622!10545-107H5;0.435276!10544-107H4;0.141865!10704-109H2;0.917907!10510-107D6;0.48343!10558-107I9;0.154674!10020-101D2;0.983704!10732-110B3;0.0229385!10049-101G4;0.990232!10698-109G5;0.564478!10437-106E5;0.386051!10417-106C3;0.00857873!10035-101E8;0.306774!10171-103B9;0.0183552!10157-103A4;0.0720836!10034-101E7;0.0229997!10072-101I9;0.0149355!10199-103F1;0.176376!10200-103F2;0.274558!10697-109G4;0.215527!10723-110A3;0.944912!10179-103C8;0.718576!10160-103A7;0.0399565!10180-103C9;0.0169147!10162-103A9;0.467637!10021-101D3;0.180064!10840-111E3;0.329225!10706-109H4;0.153769!10033-101E6;0.348497!10032-101E5;0.00556737!10490-107B4;0.0286742!10439-106E7;0.529385!10022-101D4;0.628885!10176-103C5;0.0126356!10469-106I1;0.0314515!10067-101I4;0.961269!10411-106B6;0.0978794!10471-106I3;0.798191!10030-101E3;0.559342!10475-106I7;0.000860802!10787-110H4;0.966313!10477-106I9;0.942737!10695-109G2;0.979113!11771-123I7;0.473391!11772-123I8;0.749111!11773-123I9;0.918429!10093-102C3;0.35358!10442-106F1;0.278642!10442-106F1;0.0421742!10201-103F3;0.077661!10639-108I9;0.0994618!11843-124H7;0.836198!11841-124H5;0.728588!10693-109F9;0.165104!10436-106E4;0.769284!10483-107A6;0.824575!10282-104F3;0.411501!10023-101D5;0.405129!10066-101I3;0.178681!10065-101I2;0.909631!10800-110I8;0.548972!10610-108F7;0.822137!10841-111E4;0.497254!10541-107H1;0.962589!10842-111E5;0.82888!10562-108A4;0.943648!10024-101D6;0.579159!10064-101I1;0.141929!10609-108F6;0.136744!10048-101G3;0.959269!10781-110G7;0.0383848!10181-103D1;0.867173!10159-103A6;0.00982331!10056-101H2;0.000897436!10737-110B8;0.0680236!10025-101D7;0.199825!10044-101F8;0.692665!10424-106D1;0.608309!10463-106H4;0.0664937!10616-108G4;0.554758!10486-107A9;0.338569!10062-101H8;0.533503!10202-103F4;0.188213!10158-103A5;0.4277!10441-106E9;2.28569e-06!10031-101E4;0.786919!10063-101H9;0.0191138!10063-101H9;0.130601!11763-123H8;0.274911!11765-123I1;0.267878!11768-123I4;0.91744!10807-111A6;0.384402!10790-110H7;0.863572!10798-110I6;0.859948!10786-110H3;0.924337!10591-108D6;0.341856!10593-108D8;0.632707!10590-108D5;0.174961!10026-101D8;0.74063!10096-102C6;0.425059!10168-103B6;0.916832!10154-103A1;0.0107861!10209-103G2;0.000365113!10061-101H7;0.329367!10027-101D9;0.489889!10043-101F7;0.672709!10783-110G9;0.889204!10028-101E1;0.00972446!10060-101H6;0.000976033!10203-103F5;0.239928!10059-101H5;0.644308!10047-101G2;0.682592!10029-101E2;0.742123!10058-101H4;0.160991!10418-106C4;0.50551!10492-107B6;0.573085!10694-109G1;0.70042!10797-110I5;0.196265!10057-101H3;0.729385!10100-102D1;0.636477!10055-101H1;0.118228!10204-103F6;0.481838!10191-103E2;0.01684!10563-108A5;0.605747
|name=CACGAAG,motif790,CNhs12639,T:1550.0(45.47%),B:26976.9(36.16%),P:1e-28
|name=CACGAAG,motif790,CNhs12639,T:1550.0(45.47%),B:26976.9(36.16%),P:1e-28
|tomtom_result=Deaf1#MA0185.1;0;0.00316682;1.5074;1;6;CACGAAG;CACGAA;-!SPI1#MA0080.2;-1;0.00632377;3.01011;1;6;CACGAAG;AGGAAGT;+!FEV#MA0156.1;0;0.00762;3.62712;1;7;CACGAAG;CAGGAAAT;+!ttx-3::ceh-10#MA0263.1;2;0.00814396;3.87653;1;7;CACGAAG;TTAACGAAGCCAAT;-!Stat3#MA0144.1;3;0.0093454;4.44841;1;7;CACGAAG;TTCCAGGAAG;+!SOX10#MA0442.1;-1;0.0158312;7.53564;1;6;CACGAAG;ACAAAG;-!Eip74EF#MA0026.1;0;0.0171811;8.17822;1;7;CACGAAG;CCGGAAG;+
}}
}}

Latest revision as of 13:05, 7 September 2012

Full Name: CACGAAG,motif790,CNhs12639,T:1550.0(45.47%),B:26976.9(36.16%),P:1e-28

Motif matrix
POACGT
1511.5987.3549.61.55
21545.351.551.551.55
3516.15978.051.5554.25
41.551.551545.351.55
51545.351.551.551.55
61545.351.551.551.55
71.551.551545.351.55

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Deaf1#MA0185.100.003166821.507416CACGAAGCACGAA-
SPI1#MA0080.2-10.006323773.0101116CACGAAGAGGAAGT+
FEV#MA0156.100.007623.6271217CACGAAGCAGGAAAT+
ttx-3::ceh-10#MA0263.120.008143963.8765317CACGAAGTTAACGAAGCCAAT-
Stat3#MA0144.130.00934544.4484117CACGAAGTTCCAGGAAG+
SOX10#MA0442.1-10.01583127.5356416CACGAAGACAAAG-
Eip74EF#MA0026.100.01718118.1782217CACGAAGCCGGAAG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:CACGAAG,motif790&oldid=2133876"