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MacroAPE 1083:5-GTTGTTGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;361.73;296.5;1959.865;346.905!2;284.64;412.135;231.27;2036.955!3;376.555;80.055;231.27;2277.12!4;222.375;136.39;2354.21;252.025!5;177.9;533....")
 
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8;0.503065!10789-110H6;0.173033!10828-111C9;0.18281!10788-110H5;0.309792!10792-110H9;0.493389!10765-110E9;0.73119!10829-111D1;0.375703!10830-111D2;0.446015!10831-111D3;0.672245!10832-111D4;0.15722!10833-111D5;0.150317!10764-110E8;0.262812!10770-110F5;0.186154!10399-106A3;0.84766!10400-106A4;0.239072!10405-106A9;0.242515!10834-111D6;0.340323!10835-111D7;0.31274!10836-111D8;0.302068!10837-111D9;0.255287!10699-109G6;0.447907!10802-111A1;0.725993!10796-110I4;0.331027!10010-101C1;0.0783709!10810-111A9;0.322747!10421-106C7;0.48572!10708-109H6;0.744781!12235-129G3;0.505933!12236-129G4;0.222062!12237-129G5;0.258063!10167-103B5;0.243822!10151-102I7;0.201793!10428-106D5;0.153303!10795-110I3;0.375863!10805-111A4;0.222959!10052-101G7;0.719563!10189-103D9;0.894559!10589-108D4;0.983227!10425-106D2;0.854869!10427-106D4;0.940308!10702-109G9;0.225831!10432-106D9;0.98286!10496-107C1;0.0520591!10718-109I7;0.27704!10011-101C2;0.160531!10053-101G8;0.503858!10686-109F2;0.887535!10084-102B3;0.926573!10012-101C3;0.294491!10085-102B4;0.263355!10482-107A5;0.221122!10419-106C5;0.511969!10080-102A8;0.394587!10760-110E4;0.275841!10709-109H7;0.0864468!10710-109H8;0.365275!10703-109H1;0.174296!10719-109I8;0.956554!10642-109A3;0.393975!10177-103C6;0.470603!10164-103B2;0.276788!10173-103C2;0.150702!10166-103B4;0.317178!10083-102B2;0.189838!10188-103D8;0.416119!10552-107I3;0.263521!10553-107I4;0.180461!10013-101C4;0.184567!10536-107G5;0.424857!10618-108G6;0.976754!10423-106C9;0.464025!10785-110H2;0.610097!12238-129G6;0.0983517!12239-129G7;0.201365!12240-129G8;0.998092!10416-106C2;0.142206!10801-110I9;0.12638!10766-110F1;0.481387!10824-111C5;0.232952!10825-111C6;0.516072!10826-111C7;0.449532!10454-106G4;0.471822!10409-106B4;0.323766!10638-108I8;0.456211!10636-108I6;0.0747791!10513-107D9;0.214297!10420-106C6;0.22713!10082-102B1;0.302507!10014-101C5;0.511422!10070-101I7;0.904558!10452-106G2;0.64868!10453-106G3;0.645025!10449-106F8;0.354862!10042-101F6;0.376345!10069-101I6;0.264383!10193-103E4;0.84355!10631-108I1;0.268244!10438-106E6;0.562563!10488-107B2;0.0898391!10196-103E7;0.401298!10071-101I8;0.794535!10071-101I8;0.414266!10041-101F5;0.248986!10451-106G1;0.552164!10450-106F9;0.967011!10604-108F1;0.673043!10605-108F2;0.192169!10606-108F3;0.536719!10603-108E9;0.410423!10497-107C2;0.148913!10448-106F7;0.324919!10643-109A4;0.80173!10426-106D3;0.126711!10431-106D8;0.0566545!10197-103E8;0.0477871!10443-106F2;0.552129!10815-111B5;0.0494753!10816-111B6;0.164586!10817-111B7;0.25107!10015-101C6;0.184306!10410-106B5;0.816775!10054-101G9;0.549695!10758-110E2;0.534028!10711-109H9;0.928005!10040-101F4;0.243179!10470-106I2;0.219036!10415-106C1;0.12749!10198-103E9;0.288015!10614-108G2;0.800372!10612-108F9;0.410898!10549-107H9;0.090242!10615-108G3;0.575309!10487-107B1;0.535758!10433-106E1;0.163553!10688-109F4;0.520598!10444-106F3;0.227987!10444-106F3;0.868847!10485-107A8;0.731526!10413-106B8;0.774297!10175-103C4;0.58916!10161-103A8;0.287415!12131-128D7;0.175455!10624-108H3;0.55022!10712-109I1;0.348784!10205-103F7;0.145831!10206-103F8;0.474762!10207-103F9;0.655826!10050-101G5;0.947745!10051-101G6;0.511789!10016-101C7;0.959859!10046-101G1;0.668735!10778-110G4;0.959853!10633-108I3;0.337924!10818-111B8;0.612659!10819-111B9;0.492306!10820-111C1;0.415858!10484-107A7;0.514295!10808-111A7;0.457104!10169-103B7;0.531989!10153-102I9;0.261209!13425-144D5;0.184255!13433-144E4;0.978284!13437-144E8;0.802149!11904-125F5;0.761158!11905-125F6;0.500767!10039-101F3;0.384578!10791-110H8;0.194316!10017-101C8;0.196796!10045-101F9;0.811159!10509-107D5;0.962532!10839-111E2;0.636382!10692-109F8;0.064877!10079-102A7;0.158995!10078-102A6;0.997381!10721-110A1;0.691877!10569-108B2;0.973527!10570-108B3;0.159246!10571-108B4;0.28367!10647-109A8;0.187823!10752-110D5;0.635509!10782-110G8;0.85249!10726-110A6;0.87855!10018-101C9;0.442097!10086-102B5;0.846861!10182-103D2;0.10438!10165-103B3;0.233833!10499-107C4;0.156236!10408-106B3;0.256689!10019-101D1;0.286474!10068-101I5;0.323869!10075-102A3;0.123185!10077-102A5;0.512242!10727-110A7;0.692507!10775-110G1;0.505814!10412-106B7;0.495455!12231-129F8;0.335074!12232-129F9;0.0370344!12233-129G1;0.113382!12234-129G2;0.0762655!10414-106B9;0.0999927!10170-103B8;0.939005!10183-103D3;0.231101!10150-102I6;0.236848!10174-103C3;0.166917!10155-103A2;0.282932!10038-101F2;0.232881!10838-111E1;0.245167!10759-110E3;0.732773!10514-107E1;0.248498!10465-106H6;0.891735!10691-109F7;0.781744!10843-111E6;0.150373!10844-111E7;0.952616!11747-123G1;0.887953!11748-123G2;0.913566!11749-123G3;0.735692!11750-123G4;0.367745!11751-123G5;0.826284!11840-124H4;0.796816!11752-123G6;0.572565!11753-123G7;0.0720213!11754-123G8;0.406998!11755-123G9;0.937578!11756-123H1;0.612306!11833-124G6;0.998859!11760-123H5;0.158288!11836-124G9;0.63639!11758-123H3;0.69472!11835-124G8;0.387516!11762-123H7;0.213362!11838-124H2;0.866357!11757-123H2;0.374611!11759-123H4;0.527502!11761-123H6;0.682492!11842-124H6;0.456368!11837-124H1;0.0938351!10568-108B1;0.754411!13230-141I8;0.665371!13231-141I9;0.897225!10696-109G3;0.92591!10493-107B7;0.529116!10494-107B8;0.894895!10850-111F4;0.830831!10851-111F5;0.330938!10852-111F6;0.651773!10853-111F7;0.364517!10854-111F8;0.788491!10855-111F9;0.709516!10856-111G1;0.289779!10847-111F1;0.634484!10846-111E9;0.221047!10848-111F2;0.318076!10845-111E8;0.365136!10857-111G2;0.82787!10858-111G3;0.346735!10156-103A3;0.680153!11901-125F2;0.17863!11902-125F3;0.177167!11903-125F4;0.474847!10689-109F5;0.320886!10648-109A9;0.439355!10784-110H1;0.293685!10744-110C6;0.0108908!10772-110F7;0.439434!10474-106I6;0.716221!10600-108E6;0.846843!10684-109E9;0.579229!12226-129F3;0.847472!12227-129F4;0.0763892!10508-107D4;0.867495!10539-107G8;0.270878!10607-108F4;0.596919!10555-107I6;0.319912!10774-110F9;0.60846!10637-108I7;0.683972!10663-109C6;0.232552!10728-110A8;0.101327!10729-110A9;0.962546!10430-106D7;0.926793!10730-110B1;0.735627!10813-111B3;0.0354255!10812-111B2;0.560853!10037-101F1;0.279714!10172-103C1;0.192433!10163-103B1;0.216713!10076-102A4;0.160026!10073-102A1;0.279795!10036-101E9;0.356185!10195-103E6;0.19229!10277-104E7;0.221635!10434-106E2;0.283959!10550-107I1;0.138853!10545-107H5;0.0930557!10544-107H4;0.0771106!10704-109H2;0.0390317!10510-107D6;0.425466!10558-107I9;0.220549!10020-101D2;0.334937!10732-110B3;0.330042!10049-101G4;0.235195!10698-109G5;0.23201!10437-106E5;0.301397!10417-106C3;0.708646!10035-101E8;0.00942549!10171-103B9;0.208013!10157-103A4;0.217015!10034-101E7;0.18068!10072-101I9;0.211104!10199-103F1;0.23846!10200-103F2;0.226982!10697-109G4;0.732166!10723-110A3;0.935572!10179-103C8;0.0337685!10160-103A7;0.217801!10180-103C9;0.282198!10162-103A9;0.175906!10021-101D3;0.0932189!10840-111E3;0.774799!10706-109H4;0.399352!10033-101E6;0.681189!10032-101E5;0.196079!10490-107B4;0.222525!10439-106E7;0.61258!10022-101D4;0.0832375!10176-103C5;0.52257!10469-106I1;0.166972!10067-101I4;0.118688!10411-106B6;0.781268!10471-106I3;0.559426!10030-101E3;0.710123!10475-106I7;0.480158!10787-110H4;0.63973!10477-106I9;0.304517!10695-109G2;0.640273!11771-123I7;0.254885!11772-123I8;0.996996!11773-123I9;0.525961!10093-102C3;0.386641!10442-106F1;0.999154!10442-106F1;0.422426!10201-103F3;0.570282!10639-108I9;0.918337!11843-124H7;0.324197!11841-124H5;0.414425!10693-109F9;0.50944!10436-106E4;0.403855!10483-107A6;0.0610917!10282-104F3;0.0937294!10023-101D5;0.714171!10066-101I3;0.92829!10065-101I2;0.449108!10800-110I8;0.745213!10610-108F7;0.834401!10841-111E4;0.328747!10541-107H1;0.471025!10842-111E5;0.121281!10562-108A4;0.573982!10024-101D6;0.395021!10064-101I1;0.372117!10609-108F6;0.074074!10048-101G3;0.169119!10781-110G7;0.341543!10181-103D1;0.0947099!10159-103A6;0.392605!10056-101H2;0.197246!10737-110B8;0.447876!10025-101D7;0.460649!10044-101F8;0.751524!10424-106D1;0.822033!10463-106H4;0.413134!10616-108G4;0.0424664!10486-107A9;0.196212!10062-101H8;0.163816!10202-103F4;0.379376!10158-103A5;0.367022!10441-106E9;0.239586!10031-101E4;0.603055!10063-101H9;0.224019!10063-101H9;0.237909!11763-123H8;0.802119!11765-123I1;0.604504!11768-123I4;0.877497!10807-111A6;0.527621!10790-110H7;0.646917!10798-110I6;0.851892!10786-110H3;0.733987!10591-108D6;0.731479!10593-108D8;0.546087!10590-108D5;0.577707!10026-101D8;0.59045!10096-102C6;0.140078!10168-103B6;0.0139133!10154-103A1;0.201051!10209-103G2;0.168572!10061-101H7;0.850951!10027-101D9;0.872175!10043-101F7;0.26023!10783-110G9;0.991061!10028-101E1;0.662032!10060-101H6;0.0957829!10203-103F5;0.617345!10059-101H5;0.367558!10047-101G2;0.219827!10029-101E2;0.152199!10058-101H4;0.805204!10418-106C4;0.984803!10492-107B6;0.117493!10694-109G1;0.421368!10797-110I5;0.858173!10057-101H3;0.335297!10100-102D1;0.208005!10055-101H1;0.276971!10204-103F6;0.90225!10191-103E2;0.149511!10563-108A5;0.629819
|name=5-GTTGTTGC,BestGuess:MA0262.1_mab-3(0.723147098195891),T:2965.0(42.15%),B:14208.0(34.12%),P:1e-37
|name=5-GTTGTTGC,BestGuess:MA0262.1_mab-3(0.723147098195891),T:2965.0(42.15%),B:14208.0(34.12%),P:1e-37
|tomtom_result=BRCA1#MA0133.1;-1;0.00762362;3.62884;1;7;GTTGTTGC;GTGTTGT;-!En1#MA0027.1;2;0.00767094;3.65137;1;8;GTTGTTGC;AAGTAGTGCCC;+!MET31#MA0333.1;0;0.0092684;4.41176;1;8;GTTGTTGC;GGTGTGGCG;+!mab-3#MA0262.1;0;0.011538;5.49207;1;8;GTTGTTGC;AATGTTGCGAATT;+!Myf#MA0055.1;2;0.0129202;6.15003;1;8;GTTGTTGC;CAGCAGCTGCTG;-!Sox5#MA0087.1;0;0.0186482;8.87653;1;7;GTTGTTGC;ATTGTTA;-!Cebpa#MA0102.1;0;0.0190106;9.04904;1;8;GTTGTTGC;GAGATTGCGAAA;-!HCM1#MA0317.1;-1;0.0209929;9.9926;1;7;GTTGTTGC;TTGTTTAT;-!RFX1#MA0365.1;-2;0.0209929;9.9926;1;6;GTTGTTGC;GGTTGCTA;+
}}
}}

Latest revision as of 13:36, 7 September 2012

Full Name: 5-GTTGTTGC,BestGuess:MA0262.1_mab-3(0.723147098195891),T:2965.0(42.15%),B:14208.0(34.12%),P:1e-37

Motif matrix
POACGT
1361.73296.51959.865346.905
2284.64412.135231.272036.955
3376.55580.055231.272277.12
4222.375136.392354.21252.025
5177.9533.762.2652191.135
6385.45148.2535.582395.72
7177.968.1952466.88252.025
8249.062125.905171.97418.065

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

BRCA1#MA0133.1-10.007623623.6288417GTTGTTGCGTGTTGT-
En1#MA0027.120.007670943.6513718GTTGTTGCAAGTAGTGCCC+
MET31#MA0333.100.00926844.4117618GTTGTTGCGGTGTGGCG+
mab-3#MA0262.100.0115385.4920718GTTGTTGCAATGTTGCGAATT+
Myf#MA0055.120.01292026.1500318GTTGTTGCCAGCAGCTGCTG-
Sox5#MA0087.100.01864828.8765317GTTGTTGCATTGTTA-
Cebpa#MA0102.100.01901069.0490418GTTGTTGCGAGATTGCGAAA-
HCM1#MA0317.1-10.02099299.992617GTTGTTGCTTGTTTAT-
RFX1#MA0365.1-20.02099299.992616GTTGTTGCGGTTGCTA+