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MacroAPE 1083:6-AGGAAGTGAYGYAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2204.16;441.98;220.99;2.87!2;2.87;2.87;2861.39;2.87!3;2.87;2.87;2861.39;2.87!4;2861.39;2.87;2.87;2.87!5;2861.39;2.87;2.87;2.87!6;881.09;2.87...")
 
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8I7;0.0483748!12177-128I8;0.0610746!12182-129A4;0.0394609!12183-129A5;0.0464056!12184-129A6;0.0343688!10809-111A8;0.164978!10597-108E3;0.0528264!10717-109I6;0.934309!10455-106G5;0.0279774!10534-107G3;0.00604233!10429-106D6;0.408459!10464-106H5;0.639667!10827-111C8;0.069328!10789-110H6;0.337038!10828-111C9;0.125297!10788-110H5;0.127921!10792-110H9;0.514506!10765-110E9;0.0397008!10829-111D1;0.289661!10830-111D2;0.0872468!10831-111D3;0.0640724!10832-111D4;0.0580693!10833-111D5;0.014519!10764-110E8;0.0228963!10770-110F5;0.083234!10399-106A3;0.657198!10400-106A4;0.0202609!10405-106A9;0.0338873!10834-111D6;0.0111545!10835-111D7;0.0290289!10836-111D8;0.541249!10837-111D9;0.112677!10699-109G6;0.100644!10802-111A1;0.93258!10796-110I4;0.609284!10010-101C1;0.209186!10810-111A9;0.0335565!10421-106C7;0.893288!10708-109H6;0.0921366!12235-129G3;0.142274!12236-129G4;0.703432!12237-129G5;0.604035!10167-103B5;0.700216!10151-102I7;0.0395254!10428-106D5;0.0019493!10795-110I3;0.381858!10805-111A4;0.192857!10052-101G7;0.365587!10189-103D9;0.00297716!10589-108D4;0.0921186!10425-106D2;0.928391!10427-106D4;0.622836!10702-109G9;0.0159431!10432-106D9;0.0615466!10496-107C1;0.582377!10718-109I7;0.322495!10011-101C2;0.0128205!10053-101G8;0.0443346!10686-109F2;0.257296!10084-102B3;0.0830014!10012-101C3;0.00313609!10085-102B4;0.0355995!10482-107A5;0.0545345!10419-106C5;0.166995!10080-102A8;0.330768!10760-110E4;0.0243018!10709-109H7;0.129259!10710-109H8;0.78322!10703-109H1;0.0457415!10719-109I8;0.68476!10642-109A3;0.852299!10177-103C6;0.165957!10164-103B2;0.0210939!10173-103C2;0.00206667!10166-103B4;0.0145707!10083-102B2;0.000424648!10188-103D8;0.00364999!10552-107I3;0.0574994!10553-107I4;0.122738!10013-101C4;0.232454!10536-107G5;0.0159299!10618-108G6;0.673129!10423-106C9;0.229482!10785-110H2;0.41666!12238-129G6;0.386991!12239-129G7;0.935893!12240-129G8;0.769886!10416-106C2;0.475032!10801-110I9;0.30208!10766-110F1;0.829097!10824-111C5;0.114189!10825-111C6;0.229728!10826-111C7;0.275092!10454-106G4;0.164454!10409-106B4;0.241108!10638-108I8;0.15272!10636-108I6;0.119098!10513-107D9;0.149669!10420-106C6;0.59812!10082-102B1;0.447241!10014-101C5;0.0402666!10070-101I7;0.0702078!10452-106G2;0.0449402!10453-106G3;0.296983!10449-106F8;0.257885!10042-101F6;0.230709!10069-101I6;0.00108329!10193-103E4;0.00483447!10631-108I1;0.0321829!10438-106E6;0.275453!10488-107B2;0.172087!10196-103E7;0.0701901!10071-101I8;0.122144!10071-101I8;0.00765063!10041-101F5;0.0275728!10451-106G1;0.0613608!10450-106F9;0.285877!10604-108F1;0.287693!10605-108F2;0.0753703!10606-108F3;0.233351!10603-108E9;0.0924767!10497-107C2;0.116709!10448-106F7;0.00150232!10643-109A4;0.0593391!10426-106D3;0.0362534!10431-106D8;0.0433594!10197-103E8;0.561816!10443-106F2;0.0283405!10815-111B5;0.0366032!10816-111B6;0.601198!10817-111B7;0.666448!10015-101C6;0.598005!10410-106B5;0.0821279!10054-101G9;0.377229!10758-110E2;0.00174311!10711-109H9;0.000349073!10040-101F4;5.50576e-05!10470-106I2;0.01247!10415-106C1;0.891641!10198-103E9;0.491459!10614-108G2;0.00227804!10612-108F9;0.541596!10549-107H9;0.947004!10615-108G3;0.223685!10487-107B1;0.172058!10433-106E1;0.000744552!10688-109F4;0.431423!10444-106F3;0.0955725!10444-106F3;0.246796!10485-107A8;0.114881!10413-106B8;0.490124!10175-103C4;0.127813!10161-103A8;0.00446024!12131-128D7;0.0013347!10624-108H3;0.372981!10712-109I1;0.0724544!10205-103F7;0.269286!10206-103F8;6.52173e-05!10207-103F9;0.000473337!10050-101G5;0.035789!10051-101G6;0.0877602!10016-101C7;0.0204722!10046-101G1;0.00958873!10778-110G4;1.55292e-05!10633-108I3;0.342753!10818-111B8;0.0102919!10819-111B9;0.230309!10820-111C1;0.280384!10484-107A7;0.219908!10808-111A7;0.294885!10169-103B7;0.000357383!10153-102I9;0.0152591!13425-144D5;0.000816826!13433-144E4;0.53926!13437-144E8;0.970716!11904-125F5;0.779129!11905-125F6;0.0512185!10039-101F3;0.120479!10791-110H8;0.00444519!10017-101C8;0.970529!10045-101F9;0.0639929!10509-107D5;0.0201149!10839-111E2;0.811467!10692-109F8;0.283502!10079-102A7;0.995237!10078-102A6;0.002113!10721-110A1;0.0447219!10569-108B2;0.849543!10570-108B3;0.43639!10571-108B4;0.988922!10647-109A8;0.455718!10752-110D5;0.985336!10782-110G8;0.029366!10726-110A6;0.603209!10018-101C9;0.590274!10086-102B5;0.196864!10182-103D2;0.131386!10165-103B3;0.00731345!10499-107C4;0.00103646!10408-106B3;0.839864!10019-101D1;0.991985!10068-101I5;0.0590412!10075-102A3;0.0267371!10077-102A5;0.0269507!10727-110A7;0.670554!10775-110G1;0.739286!10412-106B7;0.0177448!12231-129F8;0.0221497!12232-129F9;0.146381!12233-129G1;0.402759!12234-129G2;0.316939!10414-106B9;0.244587!10170-103B8;0.605105!10183-103D3;0.0490002!10150-102I6;0.0276092!10174-103C3;0.000810331!10155-103A2;0.0158841!10038-101F2;0.000133564!10838-111E1;0.00760589!10759-110E3;0.010041!10514-107E1;0.211869!10465-106H6;0.721682!10691-109F7;0.650725!10843-111E6;0.957754!10844-111E7;0.574133!11747-123G1;0.235467!11748-123G2;0.730865!11749-123G3;0.659539!11750-123G4;0.798492!11751-123G5;0.459192!11840-124H4;0.259558!11752-123G6;0.350694!11753-123G7;0.860927!11754-123G8;0.281092!11755-123G9;0.673119!11756-123H1;0.806!11833-124G6;0.619819!11760-123H5;0.190301!11836-124G9;0.619382!11758-123H3;0.388668!11835-124G8;0.736915!11762-123H7;0.865828!11838-124H2;0.508369!11757-123H2;0.811688!11759-123H4;0.502144!11761-123H6;0.88616!11842-124H6;0.667593!11837-124H1;0.281777!10568-108B1;0.339654!13230-141I8;0.540555!13231-141I9;0.205872!10696-109G3;0.23172!10493-107B7;0.0531685!10494-107B8;0.219423!10850-111F4;0.11279!10851-111F5;0.0839234!10852-111F6;0.867903!10853-111F7;0.667951!10854-111F8;0.145335!10855-111F9;0.971254!10856-111G1;0.498662!10847-111F1;0.952709!10846-111E9;0.591717!10848-111F2;0.444802!10845-111E8;0.994253!10857-111G2;0.712391!10858-111G3;0.45545!10156-103A3;0.0517493!11901-125F2;0.000628553!11902-125F3;0.573892!11903-125F4;0.448202!10689-109F5;0.372556!10648-109A9;0.177657!10784-110H1;0.26519!10744-110C6;0.0315229!10772-110F7;0.30404!10474-106I6;0.157253!10600-108E6;0.0330289!10684-109E9;0.771298!12226-129F3;0.755335!12227-129F4;0.00273364!10508-107D4;0.685067!10539-107G8;0.295922!10607-108F4;0.140166!10555-107I6;0.46739!10774-110F9;0.106975!10637-108I7;0.756136!10663-109C6;0.508588!10728-110A8;0.785905!10729-110A9;0.453176!10430-106D7;0.102092!10730-110B1;0.743203!10813-111B3;0.677122!10812-111B2;0.0304611!10037-101F1;0.0436815!10172-103C1;0.00256896!10163-103B1;0.0262356!10076-102A4;0.00118652!10073-102A1;0.0135168!10036-101E9;0.0179975!10195-103E6;0.00350066!10277-104E7;0.00307305!10434-106E2;0.0433334!10550-107I1;0.0569655!10545-107H5;0.500195!10544-107H4;0.00235791!10704-109H2;0.218919!10510-107D6;0.331555!10558-107I9;0.0146669!10020-101D2;0.192263!10732-110B3;0.00524898!10049-101G4;0.843655!10698-109G5;0.050414!10437-106E5;0.947768!10417-106C3;0.990519!10035-101E8;0.966419!10171-103B9;0.0102717!10157-103A4;0.019305!10034-101E7;0.00213594!10072-101I9;0.00574833!10199-103F1;0.0109824!10200-103F2;0.0192008!10697-109G4;0.00758722!10723-110A3;0.704741!10179-103C8;0.608535!10160-103A7;0.0115583!10180-103C9;0.0013389!10162-103A9;0.309823!10021-101D3;0.0922752!10840-111E3;0.704291!10706-109H4;0.000926848!10033-101E6;0.00142338!10032-101E5;0.0229204!10490-107B4;0.0165965!10439-106E7;0.830023!10022-101D4;0.841461!10176-103C5;0.0167439!10469-106I1;0.0198385!10067-101I4;0.77516!10411-106B6;0.0109631!10471-106I3;0.812734!10030-101E3;0.444142!10475-106I7;6.00747e-06!10787-110H4;0.309727!10477-106I9;0.381733!10695-109G2;0.159772!11771-123I7;0.0746574!11772-123I8;0.644225!11773-123I9;0.0372571!10093-102C3;0.118146!10442-106F1;0.00307774!10442-106F1;0.00117859!10201-103F3;0.00174008!10639-108I9;0.0872095!11843-124H7;0.239675!11841-124H5;0.247966!10693-109F9;0.057464!10436-106E4;0.638517!10483-107A6;0.729093!10282-104F3;0.632275!10023-101D5;0.228744!10066-101I3;0.0446145!10065-101I2;0.0385186!10800-110I8;0.0409419!10610-108F7;0.756113!10841-111E4;0.367899!10541-107H1;0.359522!10842-111E5;0.547065!10562-108A4;0.158!10024-101D6;0.131816!10064-101I1;0.100445!10609-108F6;0.0427037!10048-101G3;0.00132705!10781-110G7;0.0233427!10181-103D1;0.0646239!10159-103A6;0.0132493!10056-101H2;0.00272999!10737-110B8;0.000827579!10025-101D7;0.248068!10044-101F8;0.926101!10424-106D1;0.291845!10463-106H4;0.118813!10616-108G4;0.193326!10486-107A9;0.000353548!10062-101H8;0.0140122!10202-103F4;0.120595!10158-103A5;0.00229237!10441-106E9;0.00388083!10031-101E4;0.994897!10063-101H9;0.00420878!10063-101H9;0.0138508!11763-123H8;0.01194!11765-123I1;0.0315772!11768-123I4;0.00494469!10807-111A6;0.135486!10790-110H7;0.839366!10798-110I6;0.878531!10786-110H3;0.398773!10591-108D6;0.395299!10593-108D8;0.816182!10590-108D5;0.606462!10026-101D8;0.866002!10096-102C6;0.0363635!10168-103B6;0.000980376!10154-103A1;0.00483653!10209-103G2;0.00028614!10061-101H7;0.0111038!10027-101D9;0.000671085!10043-101F7;0.956337!10783-110G9;0.295584!10028-101E1;0.133013!10060-101H6;0.0205511!10203-103F5;0.0153318!10059-101H5;0.0065285!10047-101G2;0.0270075!10029-101E2;0.188815!10058-101H4;0.141196!10418-106C4;0.00126106!10492-107B6;0.0578781!10694-109G1;0.966146!10797-110I5;0.485447!10057-101H3;0.961424!10100-102D1;0.020817!10055-101H1;0.0047847!10204-103F6;0.00134363!10191-103E2;0.00908469!10563-108A5;0.0388824
|name=6-AGGAAGTGAYGYAA,CNhs13488,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.743657150708996),T:2870.0(34.51%),B:9265.3(22.80%),P:1e-129
|name=6-AGGAAGTGAYGYAA,CNhs13488,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.743657150708996),T:2870.0(34.51%),B:9265.3(22.80%),P:1e-129
|tomtom_result=SPI1#MA0080.2;0;1.47881e-05;0.00703912;0.0140263;7;AGGAAGTGACGTAA;AGGAAGT;+!FEV#MA0156.1;1;0.000306631;0.145956;0.145417;7;AGGAAGTGACGTAA;CAGGAAAT;+!ELF5#MA0136.1;1;0.000631339;0.300517;0.183289;8;AGGAAGTGACGTAA;AAGGAAGTA;-!GABPA#MA0062.2;1;0.000772978;0.367937;0.183289;10;AGGAAGTGACGTAA;CCGGAAGTGGC;+!ETS1#MA0098.1;0;0.0018957;0.902352;0.345354;6;AGGAAGTGACGTAA;CGGAAA;-!SPI1#MA0080.2;0;0.00218467;1.0399;0.345354;6;AGGAAGTGACGTAA;CGGAAG;+!CST6#MA0286.1;-5;0.00313925;1.49428;0.425361;9;AGGAAGTGACGTAA;ATGACGTAA;+!GCR2#MA0305.1;0;0.0056034;2.66722;0.664342;7;AGGAAGTGACGTAA;AGGAAGC;-!ABF1#MA0265.1;4;0.0069566;3.31134;0.667637;12;AGGAAGTGACGTAA;TCGTATAAAGTGATAA;+!Eip74EF#MA0026.1;1;0.00748608;3.56337;0.667637;6;AGGAAGTGACGTAA;CCGGAAG;+!GABPA#MA0062.2;2;0.00774288;3.68561;0.667637;8;AGGAAGTGACGTAA;ACCGGAAGAG;+!TGA1A#MA0129.1;-6;0.00885511;4.21503;0.677451;7;AGGAAGTGACGTAA;TGACGTA;-!CREB1#MA0018.2;-6;0.00928519;4.41975;0.677451;8;AGGAAGTGACGTAA;TGACGTCA;+!YAP1#MA0415.1;0;0.0117538;5.59483;0.79631;14;AGGAAGTGACGTAA;ACGAGCTTACGTAAGCAAAT;-!CREB1#MA0018.2;-1;0.0151546;7.21357;0.810348;12;AGGAAGTGACGTAA;CCTGGTGACGTC;+!ELK4#MA0076.1;2;0.0160664;7.6476;0.810348;7;AGGAAGTGACGTAA;ACCGGAAGT;+!SPIB#MA0081.1;2;0.0161392;7.68224;0.810348;5;AGGAAGTGACGTAA;AGAGGAA;+!NFIL3#MA0025.1;-3;0.0163344;7.7752;0.810348;11;AGGAAGTGACGTAA;ATGTTACATAA;-!gt#MA0447.1;-5;0.0177489;8.44846;0.810348;9;AGGAAGTGACGTAA;ATTACGTAAT;+!CBF1#MA0281.1;-1;0.0187443;8.92227;0.810348;8;AGGAAGTGACGTAA;GCACGTGA;+!NR3C1#MA0113.1;2;0.0196503;9.35354;0.810348;14;AGGAAGTGACGTAA;TCAGGACATAATGTTCCC;-
}}
}}

Latest revision as of 13:37, 7 September 2012

Full Name: 6-AGGAAGTGAYGYAA,CNhs13488,BestGuess:PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer(0.743657150708996),T:2870.0(34.51%),B:9265.3(22.80%),P:1e-129

Motif matrix
POACGT
12204.16441.98220.992.87
22.872.872861.392.87
32.872.872861.392.87
42861.392.872.872.87
52861.392.872.872.87
6881.092.871983.172.87
72.872.872.872861.39
82.872.872646.14218.12
92861.392.872.872.87
102.871323.07441.981102.08
11218.122.872646.142.87
12220.991323.072.871323.07
132425.152.872.87439.11
142861.392.872.872.87

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPI1#MA0080.201.47881e-050.007039120.01402637AGGAAGTGACGTAAAGGAAGT+
FEV#MA0156.110.0003066310.1459560.1454177AGGAAGTGACGTAACAGGAAAT+
ELF5#MA0136.110.0006313390.3005170.1832898AGGAAGTGACGTAAAAGGAAGTA-
GABPA#MA0062.210.0007729780.3679370.18328910AGGAAGTGACGTAACCGGAAGTGGC+
ETS1#MA0098.100.00189570.9023520.3453546AGGAAGTGACGTAACGGAAA-
SPI1#MA0080.200.002184671.03990.3453546AGGAAGTGACGTAACGGAAG+
CST6#MA0286.1-50.003139251.494280.4253619AGGAAGTGACGTAAATGACGTAA+
GCR2#MA0305.100.00560342.667220.6643427AGGAAGTGACGTAAAGGAAGC-
ABF1#MA0265.140.00695663.311340.66763712AGGAAGTGACGTAATCGTATAAAGTGATAA+
Eip74EF#MA0026.110.007486083.563370.6676376AGGAAGTGACGTAACCGGAAG+
GABPA#MA0062.220.007742883.685610.6676378AGGAAGTGACGTAAACCGGAAGAG+
TGA1A#MA0129.1-60.008855114.215030.6774517AGGAAGTGACGTAATGACGTA-
CREB1#MA0018.2-60.009285194.419750.6774518AGGAAGTGACGTAATGACGTCA+
YAP1#MA0415.100.01175385.594830.7963114AGGAAGTGACGTAAACGAGCTTACGTAAGCAAAT-
CREB1#MA0018.2-10.01515467.213570.81034812AGGAAGTGACGTAACCTGGTGACGTC+
ELK4#MA0076.120.01606647.64760.8103487AGGAAGTGACGTAAACCGGAAGT+
SPIB#MA0081.120.01613927.682240.8103485AGGAAGTGACGTAAAGAGGAA+
NFIL3#MA0025.1-30.01633447.77520.81034811AGGAAGTGACGTAAATGTTACATAA-
gt#MA0447.1-50.01774898.448460.8103489AGGAAGTGACGTAAATTACGTAAT+
CBF1#MA0281.1-10.01874438.922270.8103488AGGAAGTGACGTAAGCACGTGA+
NR3C1#MA0113.120.01965039.353540.81034814AGGAAGTGACGTAATCAGGACATAATGTTCCC-
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