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MacroAPE 1083:6-AAGTTCCGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;380.952;51.467;10.582;37.999!2;418.47;25.493;19.24;17.797!3;28.379;48.1;370.37;34.151!4;36.075;37.037;8.177;399.711!5;42.328;46.176;13.949;3...")
 
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532-120A2;0.014033!11693-123A1;0.189124!11292-117A5;0.0918696!11369-118A1;0.581266!11441-118I1;0.927158!10007-101B4;0.77824!11520-119H8;0.00302026!11600-120H7;0.0830062!11681-122H7;0.157577!11216-116B1;0.0171104!12179-129A1;0.964804!12180-129A2;0.000401075!12181-129A3;0.000544486!12176-128I7;0.00118985!12177-128I8;0.00121958!12182-129A4;0.00200893!12183-129A5;0.000232098!12184-129A6;0.000439468!10809-111A8;0.000496808!10597-108E3;0.169697!10717-109I6;0.546033!10455-106G5;0.968809!10534-107G3;1.87804e-05!10429-106D6;0.00466466!10464-106H5;0.00474735!10827-111C8;0.0245184!10789-110H6;0.00327068!10828-111C9;0.0240575!10788-110H5;0.0177338!10792-110H9;0.122562!10765-110E9;0.00918107!10829-111D1;0.00229183!10830-111D2;0.00785158!10831-111D3;0.00461022!10832-111D4;0.0273176!10833-111D5;0.00654048!10764-110E8;0.0115273!10770-110F5;0.00630501!10399-106A3;0.0316287!10400-106A4;0.0188405!10405-106A9;0.0138506!10834-111D6;0.00914178!10835-111D7;0.0109969!10836-111D8;0.0492865!10837-111D9;0.00230072!10699-109G6;0.162813!10802-111A1;0.0374516!10796-110I4;0.0012125!10010-101C1;0.757969!10810-111A9;0.0452819!10421-106C7;0.152554!10708-109H6;0.000390098!12235-129G3;0.430235!12236-129G4;0.366392!12237-129G5;0.265402!10167-103B5;0.573416!10151-102I7;0.0264888!10428-106D5;0.0200423!10795-110I3;0.815628!10805-111A4;0.00347655!10052-101G7;0.695936!10189-103D9;0.00884047!10589-108D4;0.561949!10425-106D2;0.206079!10427-106D4;0.318747!10702-109G9;0.000623014!10432-106D9;0.123562!10496-107C1;0.522423!10718-109I7;0.434548!10011-101C2;0.0239771!10053-101G8;0.00148887!10686-109F2;0.00154787!10084-102B3;0.274608!10012-101C3;0.00218619!10085-102B4;0.00787857!10482-107A5;0.00103699!10419-106C5;0.170781!10080-102A8;0.108432!10760-110E4;0.0336513!10709-109H7;0.941296!10710-109H8;0.91058!10703-109H1;0.322464!10719-109I8;0.27634!10642-109A3;0.855245!10177-103C6;0.32713!10164-103B2;0.0125088!10173-103C2;0.0152226!10166-103B4;0.0869232!10083-102B2;0.0438554!10188-103D8;0.00778235!10552-107I3;0.00473105!10553-107I4;0.477566!10013-101C4;0.948416!10536-107G5;0.000150888!10618-108G6;0.719177!10423-106C9;0.0862467!10785-110H2;0.667229!12238-129G6;0.799694!12239-129G7;0.190425!12240-129G8;0.0123807!10416-106C2;0.810755!10801-110I9;0.0229023!10766-110F1;0.0174941!10824-111C5;0.0436545!10825-111C6;0.390811!10826-111C7;0.326929!10454-106G4;0.208803!10409-106B4;0.371702!10638-108I8;0.0626754!10636-108I6;0.630719!10513-107D9;0.260521!10420-106C6;0.695229!10082-102B1;0.83131!10014-101C5;0.00012018!10070-101I7;0.000164623!10452-106G2;0.000120558!10453-106G3;0.000156248!10449-106F8;0.00211069!10042-101F6;0.00147927!10069-101I6;0.0223099!10193-103E4;0.0116913!10631-108I1;0.0181517!10438-106E6;0.00576406!10488-107B2;0.921677!10196-103E7;0.611245!10071-101I8;0.000199021!10071-101I8;0.00635783!10041-101F5;0.00292054!10451-106G1;0.0814751!10450-106F9;0.224722!10604-108F1;0.643761!10605-108F2;0.447563!10606-108F3;0.589882!10603-108E9;0.502794!10497-107C2;0.51245!10448-106F7;0.879794!10643-109A4;0.672076!10426-106D3;0.791517!10431-106D8;0.232432!10197-103E8;0.690298!10443-106F2;0.000225516!10815-111B5;0.272387!10816-111B6;0.391731!10817-111B7;0.497925!10015-101C6;0.466126!10410-106B5;8.84767e-06!10054-101G9;0.779353!10758-110E2;0.00026865!10711-109H9;0.0461797!10040-101F4;0.00961158!10470-106I2;0.0137693!10415-106C1;0.617975!10198-103E9;0.914462!10614-108G2;0.00757408!10612-108F9;0.850297!10549-107H9;0.547875!10615-108G3;0.570423!10487-107B1;0.950965!10433-106E1;0.0178593!10688-109F4;0.368401!10444-106F3;0.794522!10444-106F3;0.0842686!10485-107A8;0.0415233!10413-106B8;0.456818!10175-103C4;0.537405!10161-103A8;0.0141663!12131-128D7;0.0360796!10624-108H3;0.000959562!10712-109I1;0.0997019!10205-103F7;4.05327e-06!10206-103F8;0.00655984!10207-103F9;0.0014878!10050-101G5;0.399452!10051-101G6;0.000717884!10016-101C7;0.011323!10046-101G1;0.00700157!10778-110G4;0.0196103!10633-108I3;0.135087!10818-111B8;0.945646!10819-111B9;0.263383!10820-111C1;0.247299!10484-107A7;0.28551!10808-111A7;0.848448!10169-103B7;0.000579848!10153-102I9;0.0217449!13425-144D5;0.00949263!13433-144E4;0.1995!13437-144E8;0.20309!11904-125F5;0.333553!11905-125F6;0.000134816!10039-101F3;0.000679924!10791-110H8;0.0121921!10017-101C8;0.702654!10045-101F9;0.000151448!10509-107D5;0.00508368!10839-111E2;0.215451!10692-109F8;0.748152!10079-102A7;0.55333!10078-102A6;0.00778447!10721-110A1;0.00564378!10569-108B2;0.689941!10570-108B3;0.0189276!10571-108B4;0.0729633!10647-109A8;0.0537413!10752-110D5;0.650788!10782-110G8;0.00694874!10726-110A6;0.296146!10018-101C9;0.0361083!10086-102B5;0.0835532!10182-103D2;0.139762!10165-103B3;0.010733!10499-107C4;0.0244085!10408-106B3;0.877401!10019-101D1;0.601877!10068-101I5;0.0625135!10075-102A3;0.0616091!10077-102A5;0.0898412!10727-110A7;0.169381!10775-110G1;4.95777e-05!10412-106B7;1.67898e-05!12231-129F8;0.299562!12232-129F9;0.524309!12233-129G1;0.457215!12234-129G2;0.925227!10414-106B9;0.691536!10170-103B8;0.696202!10183-103D3;0.0152662!10150-102I6;0.00862104!10174-103C3;0.0165456!10155-103A2;0.0151226!10038-101F2;0.0240698!10838-111E1;0.0131428!10759-110E3;0.586338!10514-107E1;0.512661!10465-106H6;0.285379!10691-109F7;0.20059!10843-111E6;0.981635!10844-111E7;0.979979!11747-123G1;0.471352!11748-123G2;0.494376!11749-123G3;0.046557!11750-123G4;0.482049!11751-123G5;0.0869898!11840-124H4;0.0408948!11752-123G6;0.0338789!11753-123G7;0.414373!11754-123G8;0.0701259!11755-123G9;0.535255!11756-123H1;0.875804!11833-124G6;0.655066!11760-123H5;0.311333!11836-124G9;0.344166!11758-123H3;0.697878!11835-124G8;0.232856!11762-123H7;0.021686!11838-124H2;0.0535407!11757-123H2;0.0181302!11759-123H4;0.332173!11761-123H6;0.385706!11842-124H6;0.0757683!11837-124H1;0.0763884!10568-108B1;0.0250205!13230-141I8;0.116221!13231-141I9;0.0278545!10696-109G3;0.0275813!10493-107B7;0.157461!10494-107B8;0.65064!10850-111F4;0.693301!10851-111F5;0.107683!10852-111F6;0.491895!10853-111F7;0.738699!10854-111F8;0.34323!10855-111F9;0.565176!10856-111G1;0.111079!10847-111F1;0.0207784!10846-111E9;0.494292!10848-111F2;0.500714!10845-111E8;0.746933!10857-111G2;0.911449!10858-111G3;0.200942!10156-103A3;0.462457!11901-125F2;0.0209185!11902-125F3;2.079e-05!11903-125F4;1.92138e-05!10689-109F5;0.00013771!10648-109A9;0.213168!10784-110H1;0.528136!10744-110C6;0.0947089!10772-110F7;1.38186e-05!10474-106I6;0.00571691!10600-108E6;2.31707e-05!10684-109E9;0.310226!12226-129F3;0.589241!12227-129F4;0.753498!10508-107D4;0.746237!10539-107G8;0.163418!10607-108F4;0.374235!10555-107I6;0.314252!10774-110F9;0.443817!10637-108I7;0.2764!10663-109C6;0.303594!10728-110A8;0.573469!10729-110A9;0.34031!10430-106D7;0.0221943!10730-110B1;0.00552853!10813-111B3;0.0374998!10812-111B2;0.0611313!10037-101F1;0.0133321!10172-103C1;0.0100251!10163-103B1;0.0124916!10076-102A4;0.0216512!10073-102A1;0.00506602!10036-101E9;0.00391876!10195-103E6;0.00839365!10277-104E7;0.00825784!10434-106E2;0.0708374!10550-107I1;0.449457!10545-107H5;0.608478!10544-107H4;0.761016!10704-109H2;0.385586!10510-107D6;0.197924!10558-107I9;0.981185!10020-101D2;0.400568!10732-110B3;0.00122801!10049-101G4;0.446512!10698-109G5;0.191445!10437-106E5;0.34143!10417-106C3;0.773864!10035-101E8;0.165584!10171-103B9;0.0122824!10157-103A4;0.02508!10034-101E7;0.0220485!10072-101I9;0.0132819!10199-103F1;0.00665658!10200-103F2;0.0735909!10697-109G4;3.938e-05!10723-110A3;0.406032!10179-103C8;0.76574!10160-103A7;0.112575!10180-103C9;0.192817!10162-103A9;0.0787079!10021-101D3;0.158828!10840-111E3;0.105674!10706-109H4;0.0011586!10033-101E6;0.615098!10032-101E5;0.0347426!10490-107B4;0.00972583!10439-106E7;0.861803!10022-101D4;0.918478!10176-103C5;0.000181821!10469-106I1;0.0130367!10067-101I4;0.753806!10411-106B6;0.000936595!10471-106I3;0.717048!10030-101E3;0.962239!10475-106I7;0.0038592!10787-110H4;0.634313!10477-106I9;0.729231!10695-109G2;0.54508!11771-123I7;0.0367691!11772-123I8;0.850344!11773-123I9;0.137162!10093-102C3;0.423687!10442-106F1;0.0964797!10442-106F1;0.379427!10201-103F3;0.62399!10639-108I9;0.00242749!11843-124H7;0.993081!11841-124H5;0.615993!10693-109F9;0.793554!10436-106E4;0.421624!10483-107A6;0.333177!10282-104F3;0.184619!10023-101D5;0.0396165!10066-101I3;0.0168528!10065-101I2;0.0119857!10800-110I8;0.00402285!10610-108F7;0.579197!10841-111E4;0.123293!10541-107H1;0.369508!10842-111E5;0.960393!10562-108A4;0.456439!10024-101D6;0.0625289!10064-101I1;0.0160797!10609-108F6;0.000250227!10048-101G3;0.589221!10781-110G7;0.000375079!10181-103D1;0.451955!10159-103A6;0.0153062!10056-101H2;0.0771016!10737-110B8;0.00245266!10025-101D7;0.0420961!10044-101F8;0.355735!10424-106D1;0.847482!10463-106H4;8.44745e-06!10616-108G4;0.33198!10486-107A9;0.00930908!10062-101H8;0.0133548!10202-103F4;0.0241974!10158-103A5;0.0798199!10441-106E9;0.0748655!10031-101E4;0.698553!10063-101H9;0.00689758!10063-101H9;0.0064115!11763-123H8;0.00613275!11765-123I1;0.0561205!11768-123I4;0.00229979!10807-111A6;0.0468473!10790-110H7;0.837495!10798-110I6;0.717!10786-110H3;0.801792!10591-108D6;0.239606!10593-108D8;0.964384!10590-108D5;0.245368!10026-101D8;0.770786!10096-102C6;7.71073e-07!10168-103B6;0.0123344!10154-103A1;0.010079!10209-103G2;0.0311742!10061-101H7;0.00357782!10027-101D9;0.00339663!10043-101F7;0.00299198!10783-110G9;0.0753899!10028-101E1;0.189802!10060-101H6;0.00354181!10203-103F5;0.0231612!10059-101H5;0.00182324!10047-101G2;0.00555311!10029-101E2;0.753341!10058-101H4;0.0216818!10418-106C4;0.00474468!10492-107B6;0.419519!10694-109G1;0.46336!10797-110I5;0.0721185!10057-101H3;0.74953!10100-102D1;0.00386804!10055-101H1;0.00348053!10204-103F6;0.00399669!10191-103E2;0.0121119!10563-108A5;0.270871
|name=6-AAGTTCCGC,CNhs10857,BestGuess:ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer(0.673401815479306),T:481.0(23.17%),B:6253.8(13.50%),P:1e-32
|name=6-AAGTTCCGC,CNhs10857,BestGuess:ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer(0.673401815479306),T:481.0(23.17%),B:6253.8(13.50%),P:1e-32
|tomtom_result=RDR1#MA0360.1;-2;0.000350635;0.166902;0.333015;7;AAGTTCCGC;GTTCCGCA;-!HAL9#MA0311.1;-3;0.00310402;1.47751;0.592656;5;AAGTTCCGC;TTCCG;-!LYS14#MA0325.1;-1;0.00311514;1.48281;0.592656;8;AAGTTCCGC;AATTCCGG;-!YRM1#MA0438.1;-1;0.0036424;1.73378;0.592656;8;AAGTTCCGC;ATTTCCGT;-!MIZF#MA0131.1;1;0.00404351;1.92471;0.592656;9;AAGTTCCGC;TAACGTCCGC;+!ARR10#MA0121.1;-1;0.00424612;2.02115;0.592656;8;AAGTTCCGC;AGATCCGC;+!SPI1#MA0080.1;-2;0.0043681;2.07921;0.592656;6;AAGTTCCGC;CTTCCG;-!YBR239C#MA0420.1;-2;0.00553838;2.63627;0.647261;7;AAGTTCCGC;GTTCCGGT;-!SPIB#MA0081.1;-3;0.00613357;2.91958;0.647261;6;AAGTTCCGC;TTCCTCT;-!ELF5#MA0136.1;0;0.00736451;3.50551;0.699444;9;AAGTTCCGC;TACTTCCTT;+!YRR1#MA0439.1;2;0.00901362;4.29048;0.778243;9;AAGTTCCGC;CTTATCTCCGC;+!YKL222C#MA0428.1;-1;0.0160672;7.64798;0.997635;8;AAGTTCCGC;ATTTCCGTT;-!ETS1#MA0098.1;-2;0.0177915;8.46877;0.997635;6;AAGTTCCGC;CTTCCG;+!DAL82#MA0291.1;0;0.0183681;8.74322;0.997635;9;AAGTTCCGC;AATGTGCGC;+!GABPA#MA0062.2;2;0.0195307;9.29662;0.997635;9;AAGTTCCGC;GCCACTTCCGG;-!ELK4#MA0076.1;-1;0.0209641;9.97891;0.997635;8;AAGTTCCGC;ACTTCCGGT;-
}}
}}

Latest revision as of 14:02, 7 September 2012

Full Name: 6-AAGTTCCGC,CNhs10857,BestGuess:ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer(0.673401815479306),T:481.0(23.17%),B:6253.8(13.50%),P:1e-32

Motif matrix
POACGT
1380.95251.46710.58237.999
2418.4725.49319.2417.797
328.37948.1370.3734.151
436.07537.0378.177399.711
542.32846.17613.949378.547
656.758344.87749.06230.303
734.151382.39536.07528.379
857.7235.113330.92857.239
931.746364.11761.08724.05

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RDR1#MA0360.1-20.0003506350.1669020.3330157AAGTTCCGCGTTCCGCA-
HAL9#MA0311.1-30.003104021.477510.5926565AAGTTCCGCTTCCG-
LYS14#MA0325.1-10.003115141.482810.5926568AAGTTCCGCAATTCCGG-
YRM1#MA0438.1-10.00364241.733780.5926568AAGTTCCGCATTTCCGT-
MIZF#MA0131.110.004043511.924710.5926569AAGTTCCGCTAACGTCCGC+
ARR10#MA0121.1-10.004246122.021150.5926568AAGTTCCGCAGATCCGC+
SPI1#MA0080.1-20.00436812.079210.5926566AAGTTCCGCCTTCCG-
YBR239C#MA0420.1-20.005538382.636270.6472617AAGTTCCGCGTTCCGGT-
SPIB#MA0081.1-30.006133572.919580.6472616AAGTTCCGCTTCCTCT-
ELF5#MA0136.100.007364513.505510.6994449AAGTTCCGCTACTTCCTT+
YRR1#MA0439.120.009013624.290480.7782439AAGTTCCGCCTTATCTCCGC+
YKL222C#MA0428.1-10.01606727.647980.9976358AAGTTCCGCATTTCCGTT-
ETS1#MA0098.1-20.01779158.468770.9976356AAGTTCCGCCTTCCG+
DAL82#MA0291.100.01836818.743220.9976359AAGTTCCGCAATGTGCGC+
GABPA#MA0062.220.01953079.296620.9976359AAGTTCCGCGCCACTTCCGG-
ELK4#MA0076.1-10.02096419.978910.9976358AAGTTCCGCACTTCCGGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:6-AAGTTCCGC&oldid=2134218"