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MacroAPE 1083:4-CGTRGTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.402;293.862;36.582;71.154!2;0.402;0.402;400.794;0.402!3;22.11;60.3;115.374;204.216!4;206.628;0.402;194.568;0.402!5;95.274;42.612;251.25;12...")
 
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06H5;0.130494!10827-111C8;0.0700083!10789-110H6;0.448144!10828-111C9;0.555675!10788-110H5;0.244543!10792-110H9;0.958969!10765-110E9;0.983682!10829-111D1;0.104662!10830-111D2;0.160741!10831-111D3;0.97407!10832-111D4;0.250951!10833-111D5;0.0173542!10764-110E8;0.0784542!10770-110F5;0.210489!10399-106A3;0.281732!10400-106A4;0.546084!10405-106A9;0.532089!10834-111D6;0.606321!10835-111D7;0.0941359!10836-111D8;0.987981!10837-111D9;0.131688!10699-109G6;0.210804!10802-111A1;0.260186!10796-110I4;0.0606476!10010-101C1;0.045419!10810-111A9;0.100361!10421-106C7;0.0838303!10708-109H6;0.032731!12235-129G3;0.147444!12236-129G4;0.9217!12237-129G5;0.44372!10167-103B5;0.583903!10151-102I7;0.561717!10428-106D5;0.503743!10795-110I3;0.286253!10805-111A4;0.0213665!10052-101G7;0.15083!10189-103D9;0.142203!10589-108D4;0.919495!10425-106D2;0.390863!10427-106D4;0.848559!10702-109G9;0.0884004!10432-106D9;0.00433077!10496-107C1;0.315625!10718-109I7;0.270164!10011-101C2;0.0839225!10053-101G8;0.0712827!10686-109F2;0.702808!10084-102B3;0.257874!10012-101C3;0.522182!10085-102B4;0.424359!10482-107A5;0.676396!10419-106C5;0.0673826!10080-102A8;0.175636!10760-110E4;0.877737!10709-109H7;0.219301!10710-109H8;0.456695!10703-109H1;0.277801!10719-109I8;0.104179!10642-109A3;0.000495453!10177-103C6;0.191386!10164-103B2;0.634303!10173-103C2;0.532526!10166-103B4;0.892597!10083-102B2;0.608879!10188-103D8;0.570542!10552-107I3;0.307738!10553-107I4;0.116465!10013-101C4;0.1236!10536-107G5;0.0267509!10618-108G6;0.0843857!10423-106C9;0.000362732!10785-110H2;0.0241695!12238-129G6;0.0353157!12239-129G7;0.563185!12240-129G8;0.0943556!10416-106C2;0.924633!10801-110I9;0.346542!10766-110F1;0.277423!10824-111C5;0.218415!10825-111C6;0.0749359!10826-111C7;0.116061!10454-106G4;0.0794015!10409-106B4;0.495441!10638-108I8;0.212583!10636-108I6;0.318511!10513-107D9;0.156096!10420-106C6;0.0487197!10082-102B1;0.296054!10014-101C5;0.590147!10070-101I7;0.209813!10452-106G2;0.523334!10453-106G3;0.0196178!10449-106F8;0.0193587!10042-101F6;0.0229481!10069-101I6;0.397401!10193-103E4;0.0148184!10631-108I1;0.408557!10438-106E6;0.0551703!10488-107B2;0.142779!10196-103E7;0.536488!10071-101I8;0.140007!10071-101I8;0.366984!10041-101F5;0.4476!10451-106G1;0.26118!10450-106F9;0.0480424!10604-108F1;0.448251!10605-108F2;0.106834!10606-108F3;0.332043!10603-108E9;0.140942!10497-107C2;0.282084!10448-106F7;0.438464!10643-109A4;0.301485!10426-106D3;0.438218!10431-106D8;0.0871467!10197-103E8;0.139055!10443-106F2;0.00658479!10815-111B5;0.944996!10816-111B6;0.0687086!10817-111B7;0.0583125!10015-101C6;0.10318!10410-106B5;0.0997661!10054-101G9;0.662951!10758-110E2;0.149081!10711-109H9;0.826912!10040-101F4;0.262777!10470-106I2;0.362009!10415-106C1;0.206815!10198-103E9;0.0652409!10614-108G2;0.177177!10612-108F9;0.0796127!10549-107H9;0.0611764!10615-108G3;0.354598!10487-107B1;0.109552!10433-106E1;0.12312!10688-109F4;0.967038!10444-106F3;0.149383!10444-106F3;0.663105!10485-107A8;0.767111!10413-106B8;0.230457!10175-103C4;0.954168!10161-103A8;0.522674!12131-128D7;0.455422!10624-108H3;0.705015!10712-109I1;0.296914!10205-103F7;0.0122146!10206-103F8;0.132449!10207-103F9;0.0297954!10050-101G5;0.501008!10051-101G6;0.355481!10016-101C7;0.0993798!10046-101G1;0.115614!10778-110G4;0.365094!10633-108I3;0.0187642!10818-111B8;0.318623!10819-111B9;0.318974!10820-111C1;0.314368!10484-107A7;0.31861!10808-111A7;0.108732!10169-103B7;0.213539!10153-102I9;0.601115!13425-144D5;0.433967!13433-144E4;0.169459!13437-144E8;0.136845!11904-125F5;0.233341!11905-125F6;0.250292!10039-101F3;0.151309!10791-110H8;0.369915!10017-101C8;0.00401906!10045-101F9;0.414384!10509-107D5;0.928197!10839-111E2;0.442217!10692-109F8;0.568971!10079-102A7;0.0509762!10078-102A6;0.0432291!10721-110A1;0.0734172!10569-108B2;0.105724!10570-108B3;0.0340823!10571-108B4;0.0292451!10647-109A8;0.0204163!10752-110D5;0.251786!10782-110G8;0.0666374!10726-110A6;0.946092!10018-101C9;0.0416148!10086-102B5;0.137953!10182-103D2;0.356952!10165-103B3;0.585888!10499-107C4;0.604132!10408-106B3;0.0680971!10019-101D1;0.0197697!10068-101I5;0.349817!10075-102A3;0.403853!10077-102A5;0.310849!10727-110A7;0.99151!10775-110G1;0.00046853!10412-106B7;0.00958599!12231-129F8;0.0923465!12232-129F9;0.643858!12233-129G1;0.685941!12234-129G2;0.916443!10414-106B9;0.683602!10170-103B8;0.32396!10183-103D3;0.618205!10150-102I6;0.493395!10174-103C3;0.476469!10155-103A2;0.624089!10038-101F2;0.523555!10838-111E1;0.473408!10759-110E3;0.547149!10514-107E1;0.157506!10465-106H6;0.0198157!10691-109F7;0.239061!10843-111E6;0.507061!10844-111E7;0.0955626!11747-123G1;0.156762!11748-123G2;0.228247!11749-123G3;0.0508281!11750-123G4;0.241317!11751-123G5;0.00919992!11840-124H4;0.00225049!11752-123G6;0.0371654!11753-123G7;0.0924323!11754-123G8;0.0929977!11755-123G9;0.132758!11756-123H1;0.284605!11833-124G6;0.0643145!11760-123H5;0.0212784!11836-124G9;0.0276179!11758-123H3;0.069323!11835-124G8;0.00669668!11762-123H7;0.00200968!11838-124H2;0.126694!11757-123H2;0.0912363!11759-123H4;0.280134!11761-123H6;0.130045!11842-124H6;0.0350354!11837-124H1;0.00117436!10568-108B1;0.0130433!13230-141I8;0.325905!13231-141I9;0.0174752!10696-109G3;0.0198231!10493-107B7;0.307174!10494-107B8;0.152158!10850-111F4;0.181051!10851-111F5;0.277511!10852-111F6;0.702723!10853-111F7;0.729441!10854-111F8;0.407062!10855-111F9;0.947315!10856-111G1;0.659225!10847-111F1;0.857386!10846-111E9;0.964884!10848-111F2;0.293575!10845-111E8;0.681998!10857-111G2;0.0593106!10858-111G3;0.771451!10156-103A3;0.808955!11901-125F2;0.451136!11902-125F3;0.576697!11903-125F4;0.798495!10689-109F5;0.789429!10648-109A9;0.782047!10784-110H1;0.356289!10744-110C6;0.240915!10772-110F7;0.00255725!10474-106I6;0.227869!10600-108E6;0.018191!10684-109E9;0.0858744!12226-129F3;0.152771!12227-129F4;0.728501!10508-107D4;0.298901!10539-107G8;0.410989!10607-108F4;0.188835!10555-107I6;0.0940295!10774-110F9;0.232398!10637-108I7;0.0943978!10663-109C6;0.00409733!10728-110A8;0.000287718!10729-110A9;0.0118977!10430-106D7;0.0125909!10730-110B1;0.0496433!10813-111B3;0.53496!10812-111B2;0.0681192!10037-101F1;0.143727!10172-103C1;0.416207!10163-103B1;0.562735!10076-102A4;0.49337!10073-102A1;0.375406!10036-101E9;0.54337!10195-103E6;0.467193!10277-104E7;0.356422!10434-106E2;0.484753!10550-107I1;0.0690413!10545-107H5;0.0913703!10544-107H4;0.171865!10704-109H2;0.0840572!10510-107D6;0.048016!10558-107I9;0.40075!10020-101D2;0.414086!10732-110B3;0.181901!10049-101G4;0.316713!10698-109G5;0.23171!10437-106E5;0.000438574!10417-106C3;0.868406!10035-101E8;0.202961!10171-103B9;0.449299!10157-103A4;0.532782!10034-101E7;0.473084!10072-101I9;0.431492!10199-103F1;0.567922!10200-103F2;0.00655429!10697-109G4;0.00510734!10723-110A3;0.30757!10179-103C8;0.701684!10160-103A7;0.497357!10180-103C9;0.493991!10162-103A9;0.350924!10021-101D3;0.623597!10840-111E3;0.966879!10706-109H4;0.0323355!10033-101E6;0.32234!10032-101E5;0.509826!10490-107B4;0.381251!10439-106E7;0.163339!10022-101D4;0.132161!10176-103C5;0.0566859!10469-106I1;0.551673!10067-101I4;0.0574237!10411-106B6;0.280459!10471-106I3;0.257334!10030-101E3;0.413775!10475-106I7;0.195253!10787-110H4;0.0344641!10477-106I9;0.261738!10695-109G2;0.454618!11771-123I7;0.211539!11772-123I8;0.951442!11773-123I9;0.935401!10093-102C3;0.742469!10442-106F1;0.0490676!10442-106F1;0.117398!10201-103F3;0.0752352!10639-108I9;0.291387!11843-124H7;0.32238!11841-124H5;0.359462!10693-109F9;0.709063!10436-106E4;0.776029!10483-107A6;0.162078!10282-104F3;0.0117665!10023-101D5;0.0147149!10066-101I3;0.0325202!10065-101I2;0.0563587!10800-110I8;0.0105128!10610-108F7;0.519243!10841-111E4;0.0659146!10541-107H1;0.24585!10842-111E5;0.3173!10562-108A4;0.0854259!10024-101D6;0.473001!10064-101I1;0.405961!10609-108F6;0.350914!10048-101G3;0.78493!10781-110G7;0.0204363!10181-103D1;0.191481!10159-103A6;0.587037!10056-101H2;0.421244!10737-110B8;0.298981!10025-101D7;0.028898!10044-101F8;0.66447!10424-106D1;0.909897!10463-106H4;0.0771098!10616-108G4;0.252686!10486-107A9;0.22054!10062-101H8;0.267112!10202-103F4;0.355815!10158-103A5;0.000814484!10441-106E9;0.388377!10031-101E4;0.713054!10063-101H9;0.443851!10063-101H9;0.602467!11763-123H8;0.0197798!11765-123I1;0.0893603!11768-123I4;0.0372088!10807-111A6;0.082974!10790-110H7;0.315276!10798-110I6;0.0790696!10786-110H3;0.187459!10591-108D6;0.186504!10593-108D8;0.0922021!10590-108D5;0.0818999!10026-101D8;0.227341!10096-102C6;0.168674!10168-103B6;0.636315!10154-103A1;0.563292!10209-103G2;0.457674!10061-101H7;0.00895353!10027-101D9;0.0129731!10043-101F7;0.431186!10783-110G9;0.513709!10028-101E1;0.946352!10060-101H6;0.110457!10203-103F5;0.116421!10059-101H5;0.0135284!10047-101G2;0.00687616!10029-101E2;0.419489!10058-101H4;0.180044!10418-106C4;0.0361793!10492-107B6;0.111384!10694-109G1;0.0536711!10797-110I5;0.677718!10057-101H3;0.104866!10100-102D1;0.019029!10055-101H1;0.0295998!10204-103F6;0.0138695!10191-103E2;0.531413!10563-108A5;0.176436
|name=4-CGTRGTTT,CNhs11891,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.731010182306382),T:402.0(36.45%),B:9965.7(21.70%),P:1e-28
|name=4-CGTRGTTT,CNhs11891,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.731010182306382),T:402.0(36.45%),B:9965.7(21.70%),P:1e-28
|tomtom_result=GSM1#MA0308.1;7;0.00206357;0.982257;0.575336;8;CGTAGTTT;TATACTCCGGAGTTTTTTAAT;-!HAP1#MA0312.1;0;0.00249132;1.18587;0.575336;8;CGTAGTTT;CGGAGATA;+!YLR278C#MA0430.1;1;0.002666;1.26902;0.575336;7;CGTAGTTT;CCGGAGTT;+!SUT2#MA0400.1;7;0.00267234;1.27203;0.575336;8;CGTAGTTT;AAATTTTCGGAGTTTATCAT;-!STB5#MA0392.1;0;0.00347604;1.6546;0.575336;8;CGTAGTTT;CGGTGTTA;+!RUNX1#MA0002.2;3;0.00414126;1.97124;0.575336;8;CGTAGTTT;GTCTGTGGTTT;+!REL#MA0101.1;0;0.00454038;2.16122;0.575336;8;CGTAGTTT;GGGGATTTCC;+!MAX#MA0058.1;3;0.00485135;2.30924;0.575336;7;CGTAGTTT;TCACGTGGTC;-!RELA#MA0107.1;0;0.00713008;3.39392;0.716444;8;CGTAGTTT;GGGAATTTCC;+!OAF1#MA0348.1;1;0.0075515;3.59452;0.716444;8;CGTAGTTT;TCGGAGATA;+!RUNX1#MA0002.2;3;0.0108923;5.18473;0.861166;8;CGTAGTTT;TATTGTGGTTA;+!MYC::MAX#MA0059.1;4;0.0108923;5.18473;0.861166;7;CGTAGTTT;ACCACGTGGTC;-!YDR520C#MA0422.1;1;0.0130502;6.21189;0.952406;8;CGTAGTTT;CCGGAGATAA;+!run::Bgb#MA0242.1;1;0.0180337;8.58405;0.99658;8;CGTAGTTT;TTGCGGTTA;-!YJL103C#MA0427.1;4;0.0184723;8.7928;0.99658;7;CGTAGTTT;TCTCCGGAGCT;-!LYS14#MA0325.1;1;0.0206494;9.82909;0.99658;7;CGTAGTTT;CCGGAATT;+!En1#MA0027.1;1;0.0206697;9.83877;0.99658;8;CGTAGTTT;AAGTAGTGCCC;+
}}
}}

Latest revision as of 14:17, 7 September 2012

Full Name: 4-CGTRGTTT,CNhs11891,BestGuess:RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq/Homer(0.731010182306382),T:402.0(36.45%),B:9965.7(21.70%),P:1e-28

Motif matrix
POACGT
10.402293.86236.58271.154
20.4020.402400.7940.402
322.1160.3115.374204.216
4206.6280.402194.5680.402
595.27442.612251.2512.864
60.40287.6360.402313.56
70.40216.4820.402384.714
8119.79641.80818.09222.306

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GSM1#MA0308.170.002063570.9822570.5753368CGTAGTTTTATACTCCGGAGTTTTTTAAT-
HAP1#MA0312.100.002491321.185870.5753368CGTAGTTTCGGAGATA+
YLR278C#MA0430.110.0026661.269020.5753367CGTAGTTTCCGGAGTT+
SUT2#MA0400.170.002672341.272030.5753368CGTAGTTTAAATTTTCGGAGTTTATCAT-
STB5#MA0392.100.003476041.65460.5753368CGTAGTTTCGGTGTTA+
RUNX1#MA0002.230.004141261.971240.5753368CGTAGTTTGTCTGTGGTTT+
REL#MA0101.100.004540382.161220.5753368CGTAGTTTGGGGATTTCC+
MAX#MA0058.130.004851352.309240.5753367CGTAGTTTTCACGTGGTC-
RELA#MA0107.100.007130083.393920.7164448CGTAGTTTGGGAATTTCC+
OAF1#MA0348.110.00755153.594520.7164448CGTAGTTTTCGGAGATA+
RUNX1#MA0002.230.01089235.184730.8611668CGTAGTTTTATTGTGGTTA+
MYC::MAX#MA0059.140.01089235.184730.8611667CGTAGTTTACCACGTGGTC-
YDR520C#MA0422.110.01305026.211890.9524068CGTAGTTTCCGGAGATAA+
run::Bgb#MA0242.110.01803378.584050.996588CGTAGTTTTTGCGGTTA-
YJL103C#MA0427.140.01847238.79280.996587CGTAGTTTTCTCCGGAGCT-
LYS14#MA0325.110.02064949.829090.996587CGTAGTTTCCGGAATT+
En1#MA0027.110.02066979.838770.996588CGTAGTTTAAGTAGTGCCC+
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