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MacroAPE 1083:9-TDDCRNMASM: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;174.432;0.948;0.948;771.672!2;230.364;166.848;234.156;316.632!3;349.812;65.412;264.492;269.232!4;0.948;724.272;0.948;221.832!5;510.972;0.948...")
 
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7131!10429-106D6;0.887847!10464-106H5;0.764886!10827-111C8;0.518425!10789-110H6;0.671148!10828-111C9;0.129048!10788-110H5;0.281056!10792-110H9;0.135332!10765-110E9;0.131819!10829-111D1;0.0139488!10830-111D2;0.426512!10831-111D3;0.202669!10832-111D4;0.0514168!10833-111D5;0.13823!10764-110E8;0.160599!10770-110F5;0.587395!10399-106A3;0.422001!10400-106A4;0.203885!10405-106A9;0.168385!10834-111D6;0.322375!10835-111D7;0.13577!10836-111D8;0.280119!10837-111D9;0.775966!10699-109G6;0.215527!10802-111A1;0.0865398!10796-110I4;0.173461!10010-101C1;0.787359!10810-111A9;0.516984!10421-106C7;0.0484254!10708-109H6;0.591521!12235-129G3;0.0420662!12236-129G4;0.993889!12237-129G5;0.190157!10167-103B5;0.741603!10151-102I7;0.148651!10428-106D5;0.136534!10795-110I3;0.991543!10805-111A4;0.626447!10052-101G7;0.014602!10189-103D9;0.610975!10589-108D4;0.357595!10425-106D2;0.178062!10427-106D4;0.780718!10702-109G9;0.749545!10432-106D9;0.537468!10496-107C1;0.490721!10718-109I7;0.149147!10011-101C2;0.299665!10053-101G8;0.260307!10686-109F2;0.418585!10084-102B3;0.943759!10012-101C3;0.254379!10085-102B4;0.169342!10482-107A5;0.245197!10419-106C5;0.806681!10080-102A8;0.107407!10760-110E4;0.370532!10709-109H7;0.204446!10710-109H8;0.332229!10703-109H1;0.326658!10719-109I8;0.448488!10642-109A3;0.579976!10177-103C6;0.63967!10164-103B2;0.122531!10173-103C2;0.123622!10166-103B4;0.19582!10083-102B2;0.182811!10188-103D8;0.265094!10552-107I3;0.102853!10553-107I4;0.848631!10013-101C4;0.992378!10536-107G5;0.890124!10618-108G6;0.0970371!10423-106C9;0.292256!10785-110H2;0.299669!12238-129G6;0.734847!12239-129G7;0.651075!12240-129G8;0.375552!10416-106C2;0.75859!10801-110I9;0.824586!10766-110F1;0.224919!10824-111C5;0.138177!10825-111C6;0.549971!10826-111C7;0.538237!10454-106G4;0.609535!10409-106B4;0.419959!10638-108I8;0.246627!10636-108I6;0.0457937!10513-107D9;0.259202!10420-106C6;0.0234528!10082-102B1;0.552101!10014-101C5;0.253544!10070-101I7;0.660587!10452-106G2;0.926838!10453-106G3;0.252672!10449-106F8;0.892987!10042-101F6;0.757438!10069-101I6;0.168826!10193-103E4;0.812817!10631-108I1;0.166078!10438-106E6;0.508839!10488-107B2;0.607065!10196-103E7;0.791205!10071-101I8;0.582849!10071-101I8;0.816847!10041-101F5;0.321168!10451-106G1;0.695543!10450-106F9;0.496155!10604-108F1;0.025769!10605-108F2;0.650492!10606-108F3;0.627603!10603-108E9;0.983859!10497-107C2;0.934583!10448-106F7;0.0250253!10643-109A4;0.251366!10426-106D3;0.0115244!10431-106D8;0.555347!10197-103E8;0.313762!10443-106F2;0.747977!10815-111B5;0.100555!10816-111B6;0.39037!10817-111B7;0.638239!10015-101C6;0.331298!10410-106B5;0.5401!10054-101G9;0.28452!10758-110E2;0.381424!10711-109H9;0.699568!10040-101F4;0.370649!10470-106I2;0.181569!10415-106C1;0.187382!10198-103E9;0.956988!10614-108G2;0.730093!10612-108F9;0.00187411!10549-107H9;0.278576!10615-108G3;0.328184!10487-107B1;0.825776!10433-106E1;0.991557!10688-109F4;0.919491!10444-106F3;0.667317!10444-106F3;0.058488!10485-107A8;0.0347229!10413-106B8;0.963707!10175-103C4;0.0201879!10161-103A8;0.114271!12131-128D7;0.159123!10624-108H3;0.283596!10712-109I1;0.551722!10205-103F7;0.936835!10206-103F8;0.461553!10207-103F9;0.998635!10050-101G5;0.363272!10051-101G6;0.722491!10016-101C7;0.662201!10046-101G1;0.73828!10778-110G4;0.651457!10633-108I3;0.921682!10818-111B8;0.0605097!10819-111B9;0.109302!10820-111C1;0.0967044!10484-107A7;0.111704!10808-111A7;0.654999!10169-103B7;0.826861!10153-102I9;0.177104!13425-144D5;0.169744!13433-144E4;0.00643153!13437-144E8;0.0270605!11904-125F5;0.0204899!11905-125F6;0.151213!10039-101F3;0.225394!10791-110H8;0.152146!10017-101C8;0.104953!10045-101F9;0.228137!10509-107D5;0.428332!10839-111E2;0.617773!10692-109F8;0.791599!10079-102A7;0.79855!10078-102A6;0.973545!10721-110A1;0.679488!10569-108B2;0.395299!10570-108B3;0.433374!10571-108B4;0.749949!10647-109A8;0.477046!10752-110D5;0.944328!10782-110G8;0.76984!10726-110A6;0.182931!10018-101C9;0.0582468!10086-102B5;0.350827!10182-103D2;0.269783!10165-103B3;0.11012!10499-107C4;0.128781!10408-106B3;0.881107!10019-101D1;0.172845!10068-101I5;0.0416909!10075-102A3;0.0921775!10077-102A5;0.347966!10727-110A7;0.752345!10775-110G1;0.632384!10412-106B7;0.364561!12231-129F8;0.971407!12232-129F9;0.144353!12233-129G1;0.126097!12234-129G2;0.186782!10414-106B9;0.316581!10170-103B8;0.576466!10183-103D3;0.146406!10150-102I6;0.152348!10174-103C3;0.155418!10155-103A2;0.147285!10038-101F2;0.161998!10838-111E1;0.141261!10759-110E3;0.424033!10514-107E1;0.0499532!10465-106H6;0.995447!10691-109F7;0.746025!10843-111E6;0.596241!10844-111E7;0.305712!11747-123G1;0.989586!11748-123G2;0.949405!11749-123G3;0.936983!11750-123G4;0.965304!11751-123G5;0.296691!11840-124H4;0.848776!11752-123G6;0.62338!11753-123G7;0.0738427!11754-123G8;0.53522!11755-123G9;0.124241!11756-123H1;0.648738!11833-124G6;0.7992!11760-123H5;0.63795!11836-124G9;0.840063!11758-123H3;0.613034!11835-124G8;0.719413!11762-123H7;0.795265!11838-124H2;0.626093!11757-123H2;0.297585!11759-123H4;0.859193!11761-123H6;0.437097!11842-124H6;0.362482!11837-124H1;0.580199!10568-108B1;0.668473!13230-141I8;0.307796!13231-141I9;0.869867!10696-109G3;0.986632!10493-107B7;0.299769!10494-107B8;0.880373!10850-111F4;0.242214!10851-111F5;0.667128!10852-111F6;0.699095!10853-111F7;0.132035!10854-111F8;0.410173!10855-111F9;0.0106865!10856-111G1;0.0873837!10847-111F1;0.0342126!10846-111E9;0.172726!10848-111F2;0.16546!10845-111E8;0.184158!10857-111G2;0.0606713!10858-111G3;0.0366467!10156-103A3;0.650004!11901-125F2;0.179204!11902-125F3;0.794925!11903-125F4;0.757349!10689-109F5;0.748211!10648-109A9;0.243077!10784-110H1;0.8224!10744-110C6;0.992254!10772-110F7;0.604152!10474-106I6;0.253473!10600-108E6;0.30921!10684-109E9;0.771815!12226-129F3;0.581497!12227-129F4;0.906887!10508-107D4;0.288319!10539-107G8;0.180542!10607-108F4;0.566289!10555-107I6;0.166933!10774-110F9;0.0652841!10637-108I7;0.0469471!10663-109C6;0.166113!10728-110A8;0.0441211!10729-110A9;0.545329!10430-106D7;0.600926!10730-110B1;0.485259!10813-111B3;0.313511!10812-111B2;0.506627!10037-101F1;0.731272!10172-103C1;0.16416!10163-103B1;0.158126!10076-102A4;0.147257!10073-102A1;0.19449!10036-101E9;0.27083!10195-103E6;0.189884!10277-104E7;0.192126!10434-106E2;0.143077!10550-107I1;0.341249!10545-107H5;0.443812!10544-107H4;0.0820357!10704-109H2;0.323865!10510-107D6;0.54885!10558-107I9;0.547361!10020-101D2;0.0886249!10732-110B3;0.994033!10049-101G4;0.225471!10698-109G5;0.6249!10437-106E5;0.58806!10417-106C3;0.757065!10035-101E8;0.501816!10171-103B9;0.172536!10157-103A4;0.126597!10034-101E7;0.135053!10072-101I9;0.1671!10199-103F1;0.165163!10200-103F2;0.903382!10697-109G4;0.964482!10723-110A3;0.563428!10179-103C8;0.431196!10160-103A7;0.0246843!10180-103C9;0.0948593!10162-103A9;0.0619013!10021-101D3;0.124043!10840-111E3;0.137886!10706-109H4;0.785767!10033-101E6;0.978697!10032-101E5;0.127148!10490-107B4;0.190683!10439-106E7;0.59156!10022-101D4;0.0769089!10176-103C5;0.498361!10469-106I1;0.125191!10067-101I4;0.755399!10411-106B6;0.946138!10471-106I3;0.000184853!10030-101E3;0.153581!10475-106I7;0.266985!10787-110H4;0.204812!10477-106I9;0.847362!10695-109G2;0.306678!11771-123I7;0.436378!11772-123I8;0.413605!11773-123I9;0.1049!10093-102C3;0.402851!10442-106F1;0.560793!10442-106F1;0.456797!10201-103F3;0.477814!10639-108I9;0.52984!11843-124H7;0.094667!11841-124H5;0.239981!10693-109F9;0.0369973!10436-106E4;0.447662!10483-107A6;0.322375!10282-104F3;0.0940499!10023-101D5;0.973445!10066-101I3;0.760557!10065-101I2;0.642191!10800-110I8;0.902643!10610-108F7;0.502051!10841-111E4;0.35885!10541-107H1;0.907921!10842-111E5;0.818694!10562-108A4;0.899532!10024-101D6;0.643748!10064-101I1;0.954548!10609-108F6;0.128941!10048-101G3;0.654087!10781-110G7;0.739149!10181-103D1;0.00352766!10159-103A6;0.182855!10056-101H2;0.139789!10737-110B8;0.433056!10025-101D7;0.903784!10044-101F8;0.611115!10424-106D1;0.312478!10463-106H4;0.332538!10616-108G4;0.966528!10486-107A9;0.418718!10062-101H8;0.66733!10202-103F4;0.730387!10158-103A5;0.655019!10441-106E9;0.179577!10031-101E4;0.0338326!10063-101H9;0.168516!10063-101H9;0.343592!11763-123H8;0.736224!11765-123I1;0.24636!11768-123I4;0.104306!10807-111A6;0.0575683!10790-110H7;0.0840255!10798-110I6;0.274626!10786-110H3;0.0950344!10591-108D6;0.119749!10593-108D8;0.328321!10590-108D5;0.00188032!10026-101D8;0.015048!10096-102C6;0.915136!10168-103B6;0.14181!10154-103A1;0.113392!10209-103G2;0.129754!10061-101H7;0.731616!10027-101D9;0.900613!10043-101F7;0.62614!10783-110G9;0.240737!10028-101E1;0.0022442!10060-101H6;0.859916!10203-103F5;0.640074!10059-101H5;0.498793!10047-101G2;0.959301!10029-101E2;0.166512!10058-101H4;0.26515!10418-106C4;0.988262!10492-107B6;0.395325!10694-109G1;0.702072!10797-110I5;0.250764!10057-101H3;0.168368!10100-102D1;0.819968!10055-101H1;0.895755!10204-103F6;0.778687!10191-103E2;0.36379!10563-108A5;0.509411
|name=9-TDDCRNMASM,CNhs10860,BestGuess:CEBPB_f1_HM09(0.709901533954884),T:948.0(36.59%),B:11030.9(23.95%),P:1e-46
|name=9-TDDCRNMASM,CNhs10860,BestGuess:CEBPB_f1_HM09(0.709901533954884),T:948.0(36.59%),B:11030.9(23.95%),P:1e-46
|tomtom_result=CEBPA#MA0102.2;1;0.000969325;0.461399;0.395782;8;TTACACCACC;ATTGCGAAA;-!HLF#MA0043.1;2;0.00165485;0.787709;0.395782;10;TTACACCACC;TATTACGTAACC;-!Cebpa#MA0102.1;0;0.00165485;0.787709;0.395782;10;TTACACCACC;TTTCGCAATCTT;+!BRCA1#MA0133.1;-2;0.00226048;1.07599;0.395782;7;TTACACCACC;ACAACAC;+!Tal1::Gata1#MA0140.1;6;0.00284909;1.35617;0.395782;10;TTACACCACC;CTTATCTGTCCCCACCAG;-!CIN5#MA0284.1;0;0.00589603;2.80651;0.622194;10;TTACACCACC;TTACGTAATC;+!Pax4#MA0068.1;6;0.00672086;3.19913;0.6364;10;TTACACCACC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!YAP6#MA0418.1;7;0.00751203;3.57573;0.6364;10;TTACACCACC;GGTCTGATTACGTAAGCGAC;+!Sox2#MA0143.1;1;0.00868696;4.13499;0.6364;10;TTACACCACC;TTTGCATAACAAAGG;-!CREB1#MA0018.2;0;0.0108987;5.1878;0.738814;8;TTACACCACC;TGACGTCA;-!SMP1#MA0383.1;10;0.0116686;5.55424;0.738814;10;TTACACCACC;TTACCTATAATTAAATTAGCA;+!RPN4#MA0373.1;-3;0.0179596;8.54878;0.947618;7;TTACACCACC;CGCCACC;-!CST6#MA0286.1;0;0.0208874;9.94239;0.997635;9;TTACACCACC;TTACGTCAT;-
}}
}}

Latest revision as of 14:20, 7 September 2012

Full Name: 9-TDDCRNMASM,CNhs10860,BestGuess:CEBPB_f1_HM09(0.709901533954884),T:948.0(36.59%),B:11030.9(23.95%),P:1e-46

Motif matrix
POACGT
1174.4320.9480.948771.672
2230.364166.848234.156316.632
3349.81265.412264.492269.232
40.948724.2720.948221.832
5510.9720.948435.1320.948
6270.18284.4244.584148.836
7401.952544.1520.9480.948
8945.1560.9480.9480.948
9147.888410.484388.680.948
10419.016527.0880.9480.948

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CEBPA#MA0102.210.0009693250.4613990.3957828TTACACCACCATTGCGAAA-
HLF#MA0043.120.001654850.7877090.39578210TTACACCACCTATTACGTAACC-
Cebpa#MA0102.100.001654850.7877090.39578210TTACACCACCTTTCGCAATCTT+
BRCA1#MA0133.1-20.002260481.075990.3957827TTACACCACCACAACAC+
Tal1::Gata1#MA0140.160.002849091.356170.39578210TTACACCACCCTTATCTGTCCCCACCAG-
CIN5#MA0284.100.005896032.806510.62219410TTACACCACCTTACGTAATC+
Pax4#MA0068.160.006720863.199130.636410TTACACCACCGAAAAATTTCCCATACTCCACTCCCCCCCC+
YAP6#MA0418.170.007512033.575730.636410TTACACCACCGGTCTGATTACGTAAGCGAC+
Sox2#MA0143.110.008686964.134990.636410TTACACCACCTTTGCATAACAAAGG-
CREB1#MA0018.200.01089875.18780.7388148TTACACCACCTGACGTCA-
SMP1#MA0383.1100.01166865.554240.73881410TTACACCACCTTACCTATAATTAAATTAGCA+
RPN4#MA0373.1-30.01795968.548780.9476187TTACACCACCCGCCACC-
CST6#MA0286.100.02088749.942390.9976359TTACACCACCTTACGTCAT-
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