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MacroAPE 1083:11-TCGGGGTGTTTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;41.568;35.073;28.145;328.214!2;18.619;325.616;47.63;41.135!3;33.774;38.97;306.564;53.692!4;22.516;54.125;313.925;42.434!5;44.166;45.032;297....")
 
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-111C8;0.382803!10789-110H6;0.441363!10828-111C9;0.214066!10788-110H5;0.156564!10792-110H9;0.792232!10765-110E9;0.902302!10829-111D1;0.0407093!10830-111D2;0.718033!10831-111D3;0.529528!10832-111D4;0.0175173!10833-111D5;0.125538!10764-110E8;0.176585!10770-110F5;0.23262!10399-106A3;0.379702!10400-106A4;0.278181!10405-106A9;0.353912!10834-111D6;0.371309!10835-111D7;0.854286!10836-111D8;0.260411!10837-111D9;0.310587!10699-109G6;0.233735!10802-111A1;0.292201!10796-110I4;0.36888!10010-101C1;0.132985!10810-111A9;0.542651!10421-106C7;0.675673!10708-109H6;0.101714!12235-129G3;0.139863!12236-129G4;0.688064!12237-129G5;0.165901!10167-103B5;0.883712!10151-102I7;0.0621013!10428-106D5;0.0848424!10795-110I3;0.655252!10805-111A4;0.781594!10052-101G7;0.819202!10189-103D9;0.598323!10589-108D4;0.198545!10425-106D2;0.806662!10427-106D4;0.246824!10702-109G9;0.183247!10432-106D9;0.020777!10496-107C1;0.11141!10718-109I7;0.471849!10011-101C2;0.0254858!10053-101G8;0.735519!10686-109F2;0.132308!10084-102B3;0.216139!10012-101C3;0.0418507!10085-102B4;0.0457305!10482-107A5;0.405267!10419-106C5;0.509193!10080-102A8;0.897798!10760-110E4;0.712289!10709-109H7;0.632115!10710-109H8;0.336493!10703-109H1;0.245076!10719-109I8;0.78682!10642-109A3;0.160732!10177-103C6;0.668911!10164-103B2;0.130394!10173-103C2;0.0737779!10166-103B4;0.104834!10083-102B2;0.1271!10188-103D8;0.048621!10552-107I3;0.0616988!10553-107I4;0.744018!10013-101C4;0.326557!10536-107G5;0.581457!10618-108G6;0.018619!10423-106C9;0.192665!10785-110H2;0.457906!12238-129G6;0.261935!12239-129G7;0.720785!12240-129G8;0.935358!10416-106C2;0.618865!10801-110I9;0.326658!10766-110F1;0.364097!10824-111C5;0.0331987!10825-111C6;0.0342166!10826-111C7;0.0201435!10454-106G4;0.0161961!10409-106B4;0.0771817!10638-108I8;0.232695!10636-108I6;0.34326!10513-107D9;0.183947!10420-106C6;0.959788!10082-102B1;0.615926!10014-101C5;0.0866366!10070-101I7;0.99699!10452-106G2;0.218531!10453-106G3;0.261554!10449-106F8;0.322907!10042-101F6;0.359656!10069-101I6;0.0588053!10193-103E4;0.845748!10631-108I1;0.0549268!10438-106E6;0.293708!10488-107B2;0.818431!10196-103E7;0.501883!10071-101I8;0.475606!10071-101I8;0.281742!10041-101F5;0.302725!10451-106G1;0.484409!10450-106F9;0.110152!10604-108F1;0.265604!10605-108F2;0.024633!10606-108F3;0.0547606!10603-108E9;0.0304006!10497-107C2;0.122621!10448-106F7;0.167526!10643-109A4;0.613632!10426-106D3;0.583614!10431-106D8;0.118277!10197-103E8;0.573471!10443-106F2;0.374088!10815-111B5;0.404287!10816-111B6;0.139571!10817-111B7;0.0919227!10015-101C6;0.109999!10410-106B5;0.901951!10054-101G9;0.978781!10758-110E2;0.560476!10711-109H9;0.866958!10040-101F4;0.114206!10470-106I2;0.0273961!10415-106C1;0.099079!10198-103E9;0.87633!10614-108G2;0.612678!10612-108F9;0.893187!10549-107H9;0.0166704!10615-108G3;0.674717!10487-107B1;0.925953!10433-106E1;0.928931!10688-109F4;0.287237!10444-106F3;0.205353!10444-106F3;0.499028!10485-107A8;0.540143!10413-106B8;0.72325!10175-103C4;0.977767!10161-103A8;0.0529039!12131-128D7;0.124449!10624-108H3;0.563995!10712-109I1;0.346743!10205-103F7;0.332353!10206-103F8;0.232478!10207-103F9;0.194431!10050-101G5;0.901632!10051-101G6;0.974261!10016-101C7;0.290336!10046-101G1;0.398274!10778-110G4;0.461894!10633-108I3;0.0226481!10818-111B8;0.917827!10819-111B9;0.795724!10820-111C1;0.760009!10484-107A7;0.749656!10808-111A7;0.250827!10169-103B7;0.412775!10153-102I9;0.0385042!13425-144D5;0.135976!13433-144E4;0.99185!13437-144E8;0.838029!11904-125F5;0.916115!11905-125F6;0.159095!10039-101F3;0.030794!10791-110H8;0.03411!10017-101C8;0.447804!10045-101F9;0.893785!10509-107D5;0.534689!10839-111E2;0.106489!10692-109F8;0.512459!10079-102A7;0.690198!10078-102A6;0.433839!10721-110A1;0.423684!10569-108B2;0.993078!10570-108B3;0.152058!10571-108B4;0.0964573!10647-109A8;0.159629!10752-110D5;0.0173667!10782-110G8;0.0900016!10726-110A6;0.0431967!10018-101C9;0.34891!10086-102B5;0.128509!10182-103D2;0.195595!10165-103B3;0.0330349!10499-107C4;0.0483214!10408-106B3;0.122701!10019-101D1;0.408976!10068-101I5;0.758085!10075-102A3;0.539092!10077-102A5;0.446662!10727-110A7;0.106673!10775-110G1;0.453771!10412-106B7;0.45397!12231-129F8;0.74438!12232-129F9;0.634323!12233-129G1;0.635398!12234-129G2;0.570527!10414-106B9;0.635304!10170-103B8;0.592415!10183-103D3;0.0478417!10150-102I6;0.0575576!10174-103C3;0.0821161!10155-103A2;0.171757!10038-101F2;0.164462!10838-111E1;0.0629779!10759-110E3;0.50106!10514-107E1;0.380347!10465-106H6;0.53957!10691-109F7;0.755017!10843-111E6;0.122741!10844-111E7;0.825218!11747-123G1;0.39501!11748-123G2;0.939485!11749-123G3;0.889002!11750-123G4;0.270558!11751-123G5;0.206011!11840-124H4;0.0419568!11752-123G6;0.0602395!11753-123G7;0.0375192!11754-123G8;0.153175!11755-123G9;0.259865!11756-123H1;0.15263!11833-124G6;0.0365137!11760-123H5;0.265553!11836-124G9;0.336421!11758-123H3;0.356573!11835-124G8;0.165841!11762-123H7;0.389392!11838-124H2;0.252896!11757-123H2;0.0966341!11759-123H4;0.0322371!11761-123H6;0.436364!11842-124H6;0.469692!11837-124H1;0.140997!10568-108B1;0.280072!13230-141I8;0.685928!13231-141I9;0.624358!10696-109G3;0.419854!10493-107B7;0.345425!10494-107B8;0.646905!10850-111F4;0.985372!10851-111F5;0.773898!10852-111F6;0.483703!10853-111F7;0.0414594!10854-111F8;0.800813!10855-111F9;0.377247!10856-111G1;0.949665!10847-111F1;0.541853!10846-111E9;0.54685!10848-111F2;0.939456!10845-111E8;0.831766!10857-111G2;0.413664!10858-111G3;0.423372!10156-103A3;0.880495!11901-125F2;0.102887!11902-125F3;0.950889!11903-125F4;0.908692!10689-109F5;0.883171!10648-109A9;0.266897!10784-110H1;0.445694!10744-110C6;0.0414258!10772-110F7;0.30649!10474-106I6;0.168079!10600-108E6;0.750713!10684-109E9;0.494902!12226-129F3;0.0441153!12227-129F4;0.191494!10508-107D4;0.291023!10539-107G8;0.603117!10607-108F4;0.299862!10555-107I6;0.937054!10774-110F9;0.415059!10637-108I7;0.291696!10663-109C6;0.26824!10728-110A8;0.068683!10729-110A9;0.0793387!10430-106D7;0.376777!10730-110B1;0.12778!10813-111B3;0.420335!10812-111B2;0.866051!10037-101F1;0.20211!10172-103C1;0.0301206!10163-103B1;0.106237!10076-102A4;0.136741!10073-102A1;0.0634605!10036-101E9;0.706363!10195-103E6;0.0449949!10277-104E7;0.0443001!10434-106E2;0.209864!10550-107I1;0.804341!10545-107H5;0.464614!10544-107H4;0.636263!10704-109H2;0.27805!10510-107D6;0.280485!10558-107I9;0.0208458!10020-101D2;0.51614!10732-110B3;0.50672!10049-101G4;0.555938!10698-109G5;0.179868!10437-106E5;0.271528!10417-106C3;0.438662!10035-101E8;0.00772582!10171-103B9;0.0292622!10157-103A4;0.0681511!10034-101E7;0.0933757!10072-101I9;0.0358208!10199-103F1;0.607921!10200-103F2;0.100713!10697-109G4;0.676126!10723-110A3;0.0524975!10179-103C8;0.154815!10160-103A7;0.244619!10180-103C9;0.243775!10162-103A9;0.0596683!10021-101D3;0.146662!10840-111E3;0.898945!10706-109H4;0.0908066!10033-101E6;0.224094!10032-101E5;0.0338265!10490-107B4;0.0273829!10439-106E7;0.530156!10022-101D4;0.100772!10176-103C5;0.475568!10469-106I1;0.0727054!10067-101I4;0.00728323!10411-106B6;0.390335!10471-106I3;0.561297!10030-101E3;0.853032!10475-106I7;0.363648!10787-110H4;0.0547383!10477-106I9;0.0628778!10695-109G2;0.211629!11771-123I7;0.948781!11772-123I8;0.0752608!11773-123I9;0.130938!10093-102C3;0.573602!10442-106F1;0.011307!10442-106F1;0.679809!10201-103F3;0.973733!10639-108I9;0.703639!11843-124H7;0.539687!11841-124H5;0.973377!10693-109F9;0.740665!10436-106E4;0.607328!10483-107A6;0.125808!10282-104F3;0.105969!10023-101D5;0.532283!10066-101I3;0.919389!10065-101I2;0.861712!10800-110I8;0.91019!10610-108F7;0.181655!10841-111E4;0.74867!10541-107H1;0.313815!10842-111E5;0.871354!10562-108A4;0.322235!10024-101D6;0.536463!10064-101I1;0.913363!10609-108F6;0.199449!10048-101G3;0.546222!10781-110G7;0.477501!10181-103D1;0.922793!10159-103A6;0.113534!10056-101H2;0.16506!10737-110B8;0.229838!10025-101D7;0.842099!10044-101F8;0.727422!10424-106D1;0.866778!10463-106H4;0.23511!10616-108G4;0.84149!10486-107A9;0.68929!10062-101H8;0.802812!10202-103F4;0.756092!10158-103A5;0.282724!10441-106E9;0.155914!10031-101E4;0.908772!10063-101H9;0.0283212!10063-101H9;0.732239!11763-123H8;0.597482!11765-123I1;0.154726!11768-123I4;0.14437!10807-111A6;0.184554!10790-110H7;0.964812!10798-110I6;0.830652!10786-110H3;0.450289!10591-108D6;0.67669!10593-108D8;0.956054!10590-108D5;0.917323!10026-101D8;0.379468!10096-102C6;0.505897!10168-103B6;0.276543!10154-103A1;0.0721334!10209-103G2;0.109161!10061-101H7;0.749699!10027-101D9;0.636773!10043-101F7;0.0804277!10783-110G9;0.335691!10028-101E1;0.596029!10060-101H6;0.224282!10203-103F5;0.673356!10059-101H5;0.793828!10047-101G2;0.965528!10029-101E2;0.900756!10058-101H4;0.359667!10418-106C4;0.310749!10492-107B6;0.327357!10694-109G1;0.190812!10797-110I5;0.187728!10057-101H3;0.0138711!10100-102D1;0.445084!10055-101H1;0.412089!10204-103F6;0.670266!10191-103E2;0.848364!10563-108A5;0.959151
|name=11-TCGGGGTGTTTT,CNhs10853,BestGuess:FOXO3_si_HM09(0.632686100110058),T:433.0(14.33%),B:3647.7(8.30%),P:1e-27
|name=11-TCGGGGTGTTTT,CNhs10853,BestGuess:FOXO3_si_HM09(0.632686100110058),T:433.0(14.33%),B:3647.7(8.30%),P:1e-27
|tomtom_result=RREB1#MA0073.1;4;0.00034814;0.165715;0.331429;12;TCGGGGTGTTTT;TGGGGGGGGGTGGTTTGGGG;-!AFT2#MA0270.1;-2;0.00116084;0.55256;0.55256;8;TCGGGGTGTTTT;GGGGTGTG;-!RDS2#MA0362.1;1;0.00262775;1.25081;0.705715;6;TCGGGGTGTTTT;CTCGGGG;+!dl_1#MA0022.1;-2;0.00296519;1.41143;0.705715;10;TCGGGGTGTTTT;GGGGTTTTTCCC;+!MGA1#MA0336.1;1;0.00646565;3.07765;1;12;TCGGGGTGTTTT;TTTAGAGTGTTCTATAGTCCT;-!mirr#MA0233.1;-6;0.0106261;5.05802;1;5;TCGGGGTGTTTT;TGTTT;-!SUT2#MA0400.1;6;0.0120608;5.74092;1;12;TCGGGGTGTTTT;AAATTTTCGGAGTTTATCAT;-!ADR1#MA0268.1;0;0.0138104;6.57376;1;7;TCGGGGTGTTTT;GTGGGGT;-!TBP#MA0108.2;-1;0.0150759;7.17615;1;11;TCGGGGTGTTTT;CCCCGCCTTTTATAC;-!TBP#MA0108.2;-1;0.0150759;7.17615;1;11;TCGGGGTGTTTT;CCCCGCCTTTTATAC;-!Ar#MA0007.1;7;0.0158337;7.53682;1;12;TCGGGGTGTTTT;GGCGGGTACACGATGTTCTTAT;-!ara#MA0210.1;-6;0.0163894;7.80137;1;5;TCGGGGTGTTTT;TGTTA;-!Macho-1#MA0118.1;-2;0.0193476;9.20943;1;9;TCGGGGTGTTTT;TGGGGGGTC;+
}}
}}

Latest revision as of 14:22, 7 September 2012

Full Name: 11-TCGGGGTGTTTT,CNhs10853,BestGuess:FOXO3_si_HM09(0.632686100110058),T:433.0(14.33%),B:3647.7(8.30%),P:1e-27

Motif matrix
POACGT
141.56835.07328.145328.214
218.619325.61647.6341.135
333.77438.97306.56453.692
422.51654.125313.92542.434
544.16645.032297.47146.331
634.6444.166310.89443.3
721.6533.77445.032332.544
833.34136.805323.01839.836
922.51633.34139.403337.74
1016.88719.05257.156339.905
1116.88728.14532.475355.493
1232.04235.93938.537326.482

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RREB1#MA0073.140.000348140.1657150.33142912TCGGGGTGTTTTTGGGGGGGGGTGGTTTGGGG-
AFT2#MA0270.1-20.001160840.552560.552568TCGGGGTGTTTTGGGGTGTG-
RDS2#MA0362.110.002627751.250810.7057156TCGGGGTGTTTTCTCGGGG+
dl_1#MA0022.1-20.002965191.411430.70571510TCGGGGTGTTTTGGGGTTTTTCCC+
MGA1#MA0336.110.006465653.07765112TCGGGGTGTTTTTTTAGAGTGTTCTATAGTCCT-
mirr#MA0233.1-60.01062615.0580215TCGGGGTGTTTTTGTTT-
SUT2#MA0400.160.01206085.74092112TCGGGGTGTTTTAAATTTTCGGAGTTTATCAT-
ADR1#MA0268.100.01381046.5737617TCGGGGTGTTTTGTGGGGT-
TBP#MA0108.2-10.01507597.17615111TCGGGGTGTTTTCCCCGCCTTTTATAC-
TBP#MA0108.2-10.01507597.17615111TCGGGGTGTTTTCCCCGCCTTTTATAC-
Ar#MA0007.170.01583377.53682112TCGGGGTGTTTTGGCGGGTACACGATGTTCTTAT-
ara#MA0210.1-60.01638947.8013715TCGGGGTGTTTTTGTTA-
Macho-1#MA0118.1-20.01934769.2094319TCGGGGTGTTTTTGGGGGGTC+
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