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MacroAPE 1083:16-GTKACGDWGC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.381;16.764;267.462;96.393!2;97.155;93.345;0.381;190.119!3;68.58;8.001;124.968;179.07!4;356.235;24.003;0.381;0.381!5;0.381;330.327;49.911;0...")
 
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C9;0.974408!10788-110H5;0.985333!10792-110H9;0.945302!10765-110E9;0.728566!10829-111D1;0.909998!10830-111D2;0.778299!10831-111D3;0.933744!10832-111D4;0.500421!10833-111D5;0.908871!10764-110E8;0.820661!10770-110F5;0.701918!10399-106A3;0.796154!10400-106A4;0.809584!10405-106A9;0.988157!10834-111D6;0.482383!10835-111D7;0.976964!10836-111D8;0.626196!10837-111D9;0.217744!10699-109G6;0.731994!10802-111A1;0.536803!10796-110I4;0.886694!10010-101C1;0.160457!10810-111A9;0.142055!10421-106C7;0.204241!10708-109H6;0.455207!12235-129G3;0.647606!12236-129G4;0.752268!12237-129G5;0.826913!10167-103B5;0.541561!10151-102I7;0.967265!10428-106D5;0.9437!10795-110I3;0.967793!10805-111A4;0.749244!10052-101G7;0.0343545!10189-103D9;0.484654!10589-108D4;0.907621!10425-106D2;0.0446299!10427-106D4;0.188127!10702-109G9;0.197295!10432-106D9;0.443289!10496-107C1;0.659497!10718-109I7;0.193044!10011-101C2;0.844779!10053-101G8;0.491438!10686-109F2;0.505384!10084-102B3;0.94789!10012-101C3;0.686196!10085-102B4;0.609577!10482-107A5;0.991302!10419-106C5;0.0615257!10080-102A8;0.0809622!10760-110E4;0.0515556!10709-109H7;0.449352!10710-109H8;0.255771!10703-109H1;0.00201902!10719-109I8;0.0895332!10642-109A3;0.149808!10177-103C6;0.213273!10164-103B2;0.711587!10173-103C2;0.633427!10166-103B4;0.731573!10083-102B2;0.858933!10188-103D8;0.993277!10552-107I3;0.788713!10553-107I4;0.0122781!10013-101C4;0.207033!10536-107G5;0.305723!10618-108G6;0.448123!10423-106C9;0.185941!10785-110H2;0.225161!12238-129G6;0.0837174!12239-129G7;0.730153!12240-129G8;0.108848!10416-106C2;0.849813!10801-110I9;0.902767!10766-110F1;0.804124!10824-111C5;0.863306!10825-111C6;0.497251!10826-111C7;0.487345!10454-106G4;0.577147!10409-106B4;0.343937!10638-108I8;0.645512!10636-108I6;0.489467!10513-107D9;0.0518095!10420-106C6;0.0603646!10082-102B1;0.169097!10014-101C5;0.479976!10070-101I7;0.683646!10452-106G2;0.986755!10453-106G3;0.16698!10449-106F8;0.529141!10042-101F6;0.652184!10069-101I6;0.757025!10193-103E4;0.507262!10631-108I1;0.792684!10438-106E6;0.314623!10488-107B2;0.0450124!10196-103E7;0.165127!10071-101I8;0.985048!10071-101I8;0.746446!10041-101F5;0.711571!10451-106G1;0.139775!10450-106F9;0.0684252!10604-108F1;0.247317!10605-108F2;0.121982!10606-108F3;0.0611954!10603-108E9;0.203979!10497-107C2;0.179208!10448-106F7;0.275811!10643-109A4;0.23191!10426-106D3;0.0672261!10431-106D8;0.568884!10197-103E8;0.902996!10443-106F2;0.823483!10815-111B5;0.910747!10816-111B6;0.159798!10817-111B7;0.135692!10015-101C6;0.192237!10410-106B5;0.180535!10054-101G9;0.0548361!10758-110E2;0.324846!10711-109H9;0.8264!10040-101F4;0.758346!10470-106I2;0.895736!10415-106C1;0.080384!10198-103E9;0.486021!10614-108G2;0.357651!10612-108F9;0.199335!10549-107H9;0.269516!10615-108G3;0.109882!10487-107B1;0.0040472!10433-106E1;0.691247!10688-109F4;0.0613413!10444-106F3;0.195925!10444-106F3;0.65348!10485-107A8;0.501799!10413-106B8;0.897937!10175-103C4;0.545232!10161-103A8;0.429841!12131-128D7;0.450151!10624-108H3;0.606215!10712-109I1;0.215922!10205-103F7;0.759991!10206-103F8;0.585957!10207-103F9;0.439565!10050-101G5;0.314079!10051-101G6;0.324613!10016-101C7;0.340046!10046-101G1;0.352387!10778-110G4;0.383851!10633-108I3;0.781142!10818-111B8;0.120832!10819-111B9;0.37138!10820-111C1;0.348993!10484-107A7;0.274534!10808-111A7;0.0254453!10169-103B7;0.254132!10153-102I9;0.920463!13425-144D5;0.777376!13433-144E4;0.595865!13437-144E8;0.766228!11904-125F5;0.535471!11905-125F6;0.388549!10039-101F3;0.335176!10791-110H8;0.911403!10017-101C8;0.738969!10045-101F9;0.947207!10509-107D5;0.997245!10839-111E2;0.0296265!10692-109F8;0.0394245!10079-102A7;0.254493!10078-102A6;0.277927!10721-110A1;0.148417!10569-108B2;0.0520274!10570-108B3;0.870194!10571-108B4;0.387621!10647-109A8;0.363942!10752-110D5;0.0978439!10782-110G8;0.389552!10726-110A6;0.5878!10018-101C9;0.500464!10086-102B5;0.772656!10182-103D2;0.754953!10165-103B3;0.740862!10499-107C4;0.700449!10408-106B3;0.0789159!10019-101D1;0.664934!10068-101I5;0.546774!10075-102A3;0.666628!10077-102A5;0.484771!10727-110A7;0.00761864!10775-110G1;0.336972!10412-106B7;0.68053!12231-129F8;0.357608!12232-129F9;0.916826!12233-129G1;0.696152!12234-129G2;0.849373!10414-106B9;0.983785!10170-103B8;0.175096!10183-103D3;0.879242!10150-102I6;0.841037!10174-103C3;0.673025!10155-103A2;0.601742!10038-101F2;0.785748!10838-111E1;0.718167!10759-110E3;0.198085!10514-107E1;0.445499!10465-106H6;0.431997!10691-109F7;0.242781!10843-111E6;0.402812!10844-111E7;0.141432!11747-123G1;0.440452!11748-123G2;0.928269!11749-123G3;0.926824!11750-123G4;0.607191!11751-123G5;0.895705!11840-124H4;0.932049!11752-123G6;0.907619!11753-123G7;0.237174!11754-123G8;0.886114!11755-123G9;0.969106!11756-123H1;0.696646!11833-124G6;0.515555!11760-123H5;0.902674!11836-124G9;0.589598!11758-123H3;0.825286!11835-124G8;0.453777!11762-123H7;0.552511!11838-124H2;0.450258!11757-123H2;0.345639!11759-123H4;0.746063!11761-123H6;0.414605!11842-124H6;0.830481!11837-124H1;0.689212!10568-108B1;0.285477!13230-141I8;0.489865!13231-141I9;0.467927!10696-109G3;0.498363!10493-107B7;0.536263!10494-107B8;0.225848!10850-111F4;0.615856!10851-111F5;0.689391!10852-111F6;0.444483!10853-111F7;0.649547!10854-111F8;0.113933!10855-111F9;0.311148!10856-111G1;0.0458598!10847-111F1;0.731657!10846-111E9;0.0936084!10848-111F2;0.375686!10845-111E8;0.718012!10857-111G2;0.453777!10858-111G3;0.686453!10156-103A3;0.908075!11901-125F2;0.665924!11902-125F3;0.852897!11903-125F4;0.916013!10689-109F5;0.720131!10648-109A9;0.186835!10784-110H1;0.596133!10744-110C6;0.460607!10772-110F7;0.311743!10474-106I6;0.907868!10600-108E6;0.614685!10684-109E9;0.142533!12226-129F3;0.524229!12227-129F4;0.635183!10508-107D4;0.183579!10539-107G8;0.169066!10607-108F4;0.560734!10555-107I6;0.0553797!10774-110F9;0.226826!10637-108I7;0.249058!10663-109C6;0.190932!10728-110A8;0.0482135!10729-110A9;0.371745!10430-106D7;0.49243!10730-110B1;0.338135!10813-111B3;0.174698!10812-111B2;0.668343!10037-101F1;0.35809!10172-103C1;0.848311!10163-103B1;0.907564!10076-102A4;0.572976!10073-102A1;0.838488!10036-101E9;0.964984!10195-103E6;0.68756!10277-104E7;0.832975!10434-106E2;0.440315!10550-107I1;0.275822!10545-107H5;0.204625!10544-107H4;0.950085!10704-109H2;0.350603!10510-107D6;0.32246!10558-107I9;0.460747!10020-101D2;0.824276!10732-110B3;0.921359!10049-101G4;0.517538!10698-109G5;0.793753!10437-106E5;0.386096!10417-106C3;0.830851!10035-101E8;0.204094!10171-103B9;0.832408!10157-103A4;0.815121!10034-101E7;0.652521!10072-101I9;0.779645!10199-103F1;0.792538!10200-103F2;0.463581!10697-109G4;0.363431!10723-110A3;0.209649!10179-103C8;0.640715!10160-103A7;0.668246!10180-103C9;0.72989!10162-103A9;0.193401!10021-101D3;0.354606!10840-111E3;0.426048!10706-109H4;0.252159!10033-101E6;0.0665518!10032-101E5;0.991766!10490-107B4;0.750671!10439-106E7;0.0877752!10022-101D4;0.328377!10176-103C5;0.657606!10469-106I1;0.763824!10067-101I4;0.00425666!10411-106B6;0.575438!10471-106I3;0.667766!10030-101E3;0.148025!10475-106I7;0.507651!10787-110H4;0.167793!10477-106I9;0.0249859!10695-109G2;0.401376!11771-123I7;0.933045!11772-123I8;0.424289!11773-123I9;0.81401!10093-102C3;0.968247!10442-106F1;0.79332!10442-106F1;0.053119!10201-103F3;0.023946!10639-108I9;0.63481!11843-124H7;0.250411!11841-124H5;0.304!10693-109F9;0.341449!10436-106E4;0.0646717!10483-107A6;0.821973!10282-104F3;0.0269551!10023-101D5;0.776765!10066-101I3;0.398205!10065-101I2;0.978895!10800-110I8;0.355597!10610-108F7;0.485233!10841-111E4;0.303462!10541-107H1;0.00962551!10842-111E5;0.146357!10562-108A4;0.220501!10024-101D6;0.178249!10064-101I1;0.891303!10609-108F6;0.881714!10048-101G3;0.0199828!10781-110G7;0.756949!10181-103D1;0.0356352!10159-103A6;0.674765!10056-101H2;0.708512!10737-110B8;0.624697!10025-101D7;0.276306!10044-101F8;0.0387701!10424-106D1;0.0365379!10463-106H4;0.437551!10616-108G4;0.00654162!10486-107A9;0.576602!10062-101H8;0.0409251!10202-103F4;0.554985!10158-103A5;0.326415!10441-106E9;0.566188!10031-101E4;0.0377449!10063-101H9;0.707531!10063-101H9;0.811869!11763-123H8;0.940333!11765-123I1;0.147889!11768-123I4;0.252636!10807-111A6;0.512921!10790-110H7;0.696726!10798-110I6;0.974906!10786-110H3;0.608127!10591-108D6;0.629633!10593-108D8;0.335362!10590-108D5;0.908566!10026-101D8;0.709718!10096-102C6;0.0723506!10168-103B6;0.000118047!10154-103A1;0.594617!10209-103G2;0.624283!10061-101H7;0.460918!10027-101D9;0.763957!10043-101F7;0.860844!10783-110G9;0.931928!10028-101E1;0.328826!10060-101H6;0.778491!10203-103F5;0.673809!10059-101H5;0.317478!10047-101G2;0.512761!10029-101E2;0.126777!10058-101H4;0.545909!10418-106C4;0.619932!10492-107B6;0.571447!10694-109G1;0.193961!10797-110I5;0.753067!10057-101H3;0.113955!10100-102D1;0.285784!10055-101H1;0.455043!10204-103F6;0.27589!10191-103E2;0.312083!10563-108A5;0.276373
|name=16-GTKACGDWGC,CNhs12001,BestGuess:E4F1_f1_HM09(0.725021247236754),T:381.0(7.83%),B:1593.4(3.75%),P:1e-38
|name=16-GTKACGDWGC,CNhs12001,BestGuess:E4F1_f1_HM09(0.725021247236754),T:381.0(7.83%),B:1593.4(3.75%),P:1e-38
|tomtom_result=FOXF2#MA0030.1;4;0.00173481;0.825771;1;10;GTTACGAAGC;ATTGTTTACGTTTG;-!FOXC1#MA0032.1;-2;0.00456781;2.17428;1;8;GTTACGAAGC;TACTTACC;-!ESR1#MA0112.2;8;0.00486602;2.31622;1;10;GTTACGAAGC;AGGTCAGGGTGACCTGGGCC;-!Foxa2#MA0047.2;2;0.00617724;2.94037;1;10;GTTACGAAGC;TGTTTACTTAGG;+!ARO80#MA0273.1;11;0.00825346;3.92865;1;10;GTTACGAAGC;GATAATTCTCGGCAAGTATGT;+!ovo#MA0126.1;3;0.0195072;9.28543;1;6;GTTACGAAGC;ACTGTTACT;-!prd#MA0239.1;3;0.0195072;9.28543;1;6;GTTACGAAGC;ACTGTTACT;-!ESR1#MA0112.2;9;0.0203953;9.70814;1;9;GTTACGAAGC;GGGGTCACGGTGACCTGG;-!NFE2L2#MA0150.1;0;0.020561;9.78705;1;10;GTTACGAAGC;ATGACTCAGCA;+!CRZ1#MA0285.1;0;0.0209163;9.95617;1;9;GTTACGAAGC;GTGGCTTAG;-!bZIP911#MA0097.1;1;0.0209864;9.98953;1;10;GTTACGAAGC;GATGACGTGGCC;+
}}
}}

Latest revision as of 14:23, 7 September 2012

Full Name: 16-GTKACGDWGC,CNhs12001,BestGuess:E4F1_f1_HM09(0.725021247236754),T:381.0(7.83%),B:1593.4(3.75%),P:1e-38

Motif matrix
POACGT
10.38116.764267.46296.393
297.15593.3450.381190.119
368.588.001124.968179.07
4356.23524.0030.3810.381
50.381330.32749.9110.381
69.14491.059169.164111.633
7138.6840.381104.775136.779
8132.20757.1570.104121.539
90.3810.381246.888133.35
1071.628184.023124.9680.381

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FOXF2#MA0030.140.001734810.825771110GTTACGAAGCATTGTTTACGTTTG-
FOXC1#MA0032.1-20.004567812.1742818GTTACGAAGCTACTTACC-
ESR1#MA0112.280.004866022.31622110GTTACGAAGCAGGTCAGGGTGACCTGGGCC-
Foxa2#MA0047.220.006177242.94037110GTTACGAAGCTGTTTACTTAGG+
ARO80#MA0273.1110.008253463.92865110GTTACGAAGCGATAATTCTCGGCAAGTATGT+
ovo#MA0126.130.01950729.2854316GTTACGAAGCACTGTTACT-
prd#MA0239.130.01950729.2854316GTTACGAAGCACTGTTACT-
ESR1#MA0112.290.02039539.7081419GTTACGAAGCGGGGTCACGGTGACCTGG-
NFE2L2#MA0150.100.0205619.78705110GTTACGAAGCATGACTCAGCA+
CRZ1#MA0285.100.02091639.9561719GTTACGAAGCGTGGCTTAG-
bZIP911#MA0097.110.02098649.98953110GTTACGAAGCGATGACGTGGCC+
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