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MacroAPE 1083:14-ACWTCYTGCTT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;105.932;23.714;6.39;5.964!2;7.526;120.984;4.97;8.52!3;57.51;14.626;18.318;51.546!4;30.246;5.112;34.506;72.136!5;20.59;67.166;41.464;12.78!6;...")
 
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A6;0.000705133!10809-111A8;3.00613e-05!10597-108E3;0.0212534!10717-109I6;0.000102869!10455-106G5;0.023235!10534-107G3;0.794622!10429-106D6;0.674837!10464-106H5;0.674763!10827-111C8;0.775585!10789-110H6;0.631915!10828-111C9;0.105863!10788-110H5;0.213983!10792-110H9;0.990568!10765-110E9;0.334283!10829-111D1;0.488924!10830-111D2;0.901048!10831-111D3;0.387144!10832-111D4;0.236134!10833-111D5;0.923391!10764-110E8;0.929918!10770-110F5;0.711423!10399-106A3;0.708331!10400-106A4;0.793892!10405-106A9;0.951402!10834-111D6;0.950335!10835-111D7;0.506929!10836-111D8;0.734931!10837-111D9;0.336653!10699-109G6;0.518453!10802-111A1;0.925583!10796-110I4;0.74465!10010-101C1;0.0143726!10810-111A9;0.232927!10421-106C7;0.037983!10708-109H6;0.914675!12235-129G3;0.0963856!12236-129G4;0.13233!12237-129G5;0.987272!10167-103B5;0.107108!10151-102I7;0.598087!10428-106D5;0.737743!10795-110I3;0.416383!10805-111A4;0.828466!10052-101G7;0.000178802!10189-103D9;0.43373!10589-108D4;0.0193019!10425-106D2;0.0079734!10427-106D4;0.13497!10702-109G9;0.901365!10432-106D9;0.54002!10496-107C1;0.347378!10718-109I7;0.072869!10011-101C2;0.338268!10053-101G8;0.811111!10686-109F2;0.00101525!10084-102B3;0.681132!10012-101C3;0.517883!10085-102B4;0.8495!10482-107A5;0.605538!10419-106C5;0.0367985!10080-102A8;0.0153557!10760-110E4;0.617322!10709-109H7;0.27153!10710-109H8;0.141652!10703-109H1;0.0211957!10719-109I8;0.000329325!10642-109A3;5.65253e-07!10177-103C6;0.000870443!10164-103B2;0.529832!10173-103C2;0.720966!10166-103B4;0.338131!10083-102B2;0.476724!10188-103D8;0.252602!10552-107I3;0.623762!10553-107I4;0.00150901!10013-101C4;0.0157923!10536-107G5;0.428015!10618-108G6;0.0598195!10423-106C9;5.39454e-05!10785-110H2;0.00307588!12238-129G6;7.37426e-06!12239-129G7;0.676247!12240-129G8;0.727459!10416-106C2;0.954968!10801-110I9;0.207644!10766-110F1;0.722552!10824-111C5;0.781366!10825-111C6;0.0606953!10826-111C7;0.047401!10454-106G4;0.0786642!10409-106B4;0.04961!10638-108I8;0.72581!10636-108I6;0.33678!10513-107D9;0.30115!10420-106C6;0.00174977!10082-102B1;0.114325!10014-101C5;0.867233!10070-101I7;0.815453!10452-106G2;0.920463!10453-106G3;0.451648!10449-106F8;0.310175!10042-101F6;0.376459!10069-101I6;0.554997!10193-103E4;0.498624!10631-108I1;0.674922!10438-106E6;0.529801!10488-107B2;0.150545!10196-103E7;0.0211992!10071-101I8;0.690513!10071-101I8;0.27432!10041-101F5;0.875899!10451-106G1;0.0662862!10450-106F9;0.0914467!10604-108F1;0.0146268!10605-108F2;0.019854!10606-108F3;0.0111249!10603-108E9;0.0238922!10497-107C2;0.0975276!10448-106F7;0.0998264!10643-109A4;0.14454!10426-106D3;0.00530718!10431-106D8;0.0543648!10197-103E8;0.0500668!10443-106F2;0.994298!10815-111B5;0.166089!10816-111B6;0.333647!10817-111B7;0.286484!10015-101C6;0.293438!10410-106B5;0.377231!10054-101G9;0.00146521!10758-110E2;0.946589!10711-109H9;0.448456!10040-101F4;0.79559!10470-106I2;0.696417!10415-106C1;0.0602364!10198-103E9;0.0827072!10614-108G2;0.37041!10612-108F9;0.117515!10549-107H9;0.0213121!10615-108G3;0.0335366!10487-107B1;4.00042e-05!10433-106E1;0.170417!10688-109F4;0.0419441!10444-106F3;0.0235334!10444-106F3;0.0857194!10485-107A8;0.12574!10413-106B8;0.0202148!10175-103C4;0.00762!10161-103A8;0.480727!12131-128D7;0.717697!10624-108H3;0.590936!10712-109I1;0.642758!10205-103F7;0.418387!10206-103F8;0.486934!10207-103F9;0.61918!10050-101G5;0.522214!10051-101G6;0.239753!10016-101C7;0.898379!10046-101G1;0.895457!10778-110G4;0.5467!10633-108I3;0.776873!10818-111B8;0.00297716!10819-111B9;0.00204984!10820-111C1;0.00245715!10484-107A7;0.00244305!10808-111A7;0.000923001!10169-103B7;0.294365!10153-102I9;0.740966!13425-144D5;0.71629!13433-144E4;0.000213089!13437-144E8;5.54567e-05!11904-125F5;0.000354727!11905-125F6;0.51317!10039-101F3;0.911096!10791-110H8;0.701183!10017-101C8;0.332282!10045-101F9;0.592989!10509-107D5;0.686838!10839-111E2;0.163573!10692-109F8;0.120526!10079-102A7;0.00722877!10078-102A6;0.560504!10721-110A1;0.637354!10569-108B2;0.0012686!10570-108B3;0.336801!10571-108B4;0.296233!10647-109A8;0.649359!10752-110D5;0.501951!10782-110G8;0.73359!10726-110A6;0.200174!10018-101C9;0.141352!10086-102B5;0.41861!10182-103D2;0.710186!10165-103B3;0.568399!10499-107C4;0.651518!10408-106B3;0.00852906!10019-101D1;0.166168!10068-101I5;0.0201107!10075-102A3;0.250977!10077-102A5;0.0479517!10727-110A7;0.00228641!10775-110G1;0.931056!10412-106B7;0.123519!12231-129F8;0.297952!12232-129F9;0.0186573!12233-129G1;0.185984!12234-129G2;0.0209854!10414-106B9;0.0216005!10170-103B8;0.0421127!10183-103D3;0.717249!10150-102I6;0.736888!10174-103C3;0.851436!10155-103A2;0.514418!10038-101F2;0.680489!10838-111E1;0.635592!10759-110E3;1.93466e-08!10514-107E1;0.66831!10465-106H6;0.0360883!10691-109F7;0.0500992!10843-111E6;0.364673!10844-111E7;0.000425763!11747-123G1;0.00251555!11748-123G2;0.639796!11749-123G3;0.722351!11750-123G4;0.512042!11751-123G5;0.819708!11840-124H4;0.618953!11752-123G6;0.913607!11753-123G7;0.142027!11754-123G8;0.795828!11755-123G9;0.177563!11756-123H1;0.00657268!11833-124G6;0.0318016!11760-123H5;0.204759!11836-124G9;0.0066405!11758-123H3;0.0296713!11835-124G8;0.250454!11762-123H7;0.261777!11838-124H2;0.535686!11757-123H2;0.72033!11759-123H4;0.306364!11761-123H6;0.0355914!11842-124H6;0.168383!11837-124H1;0.71147!10568-108B1;0.0374274!13230-141I8;0.351507!13231-141I9;0.492799!10696-109G3;0.687267!10493-107B7;0.484586!10494-107B8;0.00870399!10850-111F4;0.15383!10851-111F5;0.162954!10852-111F6;0.90795!10853-111F7;0.223751!10854-111F8;0.990644!10855-111F9;0.217811!10856-111G1;0.114656!10847-111F1;0.367897!10846-111E9;0.215237!10848-111F2;0.389356!10845-111E8;0.269317!10857-111G2;0.0284543!10858-111G3;0.0280031!10156-103A3;0.273533!11901-125F2;0.916231!11902-125F3;0.843282!11903-125F4;0.954332!10689-109F5;0.992209!10648-109A9;0.12395!10784-110H1;0.0328781!10744-110C6;0.447275!10772-110F7;0.045098!10474-106I6;0.732992!10600-108E6;0.735377!10684-109E9;0.000965427!12226-129F3;0.617421!12227-129F4;0.0438041!10508-107D4;0.748297!10539-107G8;0.00406178!10607-108F4;4.49322e-05!10555-107I6;0.00803527!10774-110F9;0.0027274!10637-108I7;0.0177078!10663-109C6;0.0777825!10728-110A8;0.000233699!10729-110A9;0.000394146!10430-106D7;0.748451!10730-110B1;0.241487!10813-111B3;0.00209488!10812-111B2;0.899965!10037-101F1;0.958457!10172-103C1;0.705072!10163-103B1;0.69267!10076-102A4;0.880538!10073-102A1;0.550647!10036-101E9;0.533229!10195-103E6;0.516349!10277-104E7;0.693267!10434-106E2;0.421623!10550-107I1;0.0813714!10545-107H5;0.000116271!10544-107H4;0.531646!10704-109H2;0.165115!10510-107D6;0.820575!10558-107I9;0.0244119!10020-101D2;0.0281773!10732-110B3;0.953474!10049-101G4;0.159375!10698-109G5;0.022929!10437-106E5;0.000961166!10417-106C3;0.540078!10035-101E8;0.245496!10171-103B9;0.585826!10157-103A4;0.647!10034-101E7;0.917376!10072-101I9;0.609871!10199-103F1;0.688551!10200-103F2;0.536297!10697-109G4;0.594621!10723-110A3;0.202553!10179-103C8;0.0585118!10160-103A7;0.235244!10180-103C9;0.419315!10162-103A9;0.317154!10021-101D3;0.273908!10840-111E3;0.815138!10706-109H4;0.55996!10033-101E6;0.719321!10032-101E5;0.555215!10490-107B4;0.578265!10439-106E7;0.0253627!10022-101D4;0.0252051!10176-103C5;0.763872!10469-106I1;0.644278!10067-101I4;0.00277678!10411-106B6;0.915606!10471-106I3;0.0199382!10030-101E3;0.0145332!10475-106I7;0.740103!10787-110H4;0.00330422!10477-106I9;0.000326458!10695-109G2;0.0184325!11771-123I7;0.633181!11772-123I8;0.101548!11773-123I9;0.0760995!10093-102C3;0.0234293!10442-106F1;0.738359!10442-106F1;0.830249!10201-103F3;0.888105!10639-108I9;0.726879!11843-124H7;0.0799276!11841-124H5;0.129829!10693-109F9;0.439783!10436-106E4;0.0329495!10483-107A6;0.47444!10282-104F3;0.16028!10023-101D5;0.83885!10066-101I3;0.794562!10065-101I2;0.919241!10800-110I8;0.929125!10610-108F7;0.00230367!10841-111E4;0.000302114!10541-107H1;1.68918e-05!10842-111E5;0.00246258!10562-108A4;0.000257996!10024-101D6;0.0235728!10064-101I1;0.59371!10609-108F6;0.37327!10048-101G3;0.0134238!10781-110G7;0.95026!10181-103D1;0.0224563!10159-103A6;0.707741!10056-101H2;0.9213!10737-110B8;0.638178!10025-101D7;0.360568!10044-101F8;0.00216203!10424-106D1;0.0259688!10463-106H4;0.737035!10616-108G4;0.0292193!10486-107A9;0.381952!10062-101H8;0.196266!10202-103F4;0.97996!10158-103A5;0.550207!10441-106E9;0.628981!10031-101E4;0.000401882!10063-101H9;0.542848!10063-101H9;0.654581!11763-123H8;0.317687!11765-123I1;0.237484!11768-123I4;0.575896!10807-111A6;0.42753!10790-110H7;0.000298974!10798-110I6;0.00118805!10786-110H3;0.000168034!10591-108D6;2.37806e-05!10593-108D8;0.0110835!10590-108D5;0.000627266!10026-101D8;0.0552034!10096-102C6;0.80666!10168-103B6;0.0288894!10154-103A1;0.600412!10209-103G2;0.762663!10061-101H7;0.400335!10027-101D9;0.439508!10043-101F7;0.00205768!10783-110G9;0.0215386!10028-101E1;0.167024!10060-101H6;0.723464!10203-103F5;0.772078!10059-101H5;0.69468!10047-101G2;0.886513!10029-101E2;0.0534769!10058-101H4;0.209855!10418-106C4;0.645608!10492-107B6;0.0335672!10694-109G1;0.0544146!10797-110I5;0.0883136!10057-101H3;0.042176!10100-102D1;0.753033!10055-101H1;0.596434!10204-103F6;0.68861!10191-103E2;0.565707!10563-108A5;0.0756031
|name=14-ACWTCYTGCTT,CNhs12548,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.685452287521708),T:142.0(2.20%),B:256.1(0.61%),P:1e-36
|name=14-ACWTCYTGCTT,CNhs12548,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.685452287521708),T:142.0(2.20%),B:256.1(0.61%),P:1e-36
|tomtom_result=FEV#MA0156.1;0;0.00221675;1.05517;0.932425;8;ACATCTTGCTT;ATTTCCTG;-!NR3C1#MA0113.1;5;0.00263048;1.25211;0.932425;11;ACATCTTGCTT;TCAGGACATAATGTTCCC;-!YAP5#MA0417.1;-5;0.00293832;1.39864;0.932425;6;ACATCTTGCTT;ATGCTT;-!Myf#MA0055.1;1;0.00494209;2.35244;1;11;ACATCTTGCTT;CAGCAGCTGCTG;-!br_Z3#MA0012.1;-1;0.00645017;3.07028;1;10;ACATCTTGCTT;CTTTTAGTTTA;-!SPI1#MA0080.2;0;0.00733129;3.48969;1;7;ACATCTTGCTT;ACTTCCT;-!IXR1#MA0323.1;4;0.00946612;4.50588;1;11;ACATCTTGCTT;CCCCGCTTCCGGCTT;-!Dof2#MA0020.1;-6;0.0107193;5.1024;1;5;ACATCTTGCTT;TGCTTT;-!mirr#MA0233.1;-6;0.0111915;5.32715;1;5;ACATCTTGCTT;TGTTT;-!ELF5#MA0136.1;1;0.0124901;5.94527;1;8;ACATCTTGCTT;TACTTCCTT;+!PEND#MA0127.1;0;0.0168712;8.03067;1;10;ACATCTTGCTT;ACTTCTTATT;+!ara#MA0210.1;-6;0.0204287;9.72406;1;5;ACATCTTGCTT;TGTTA;-
}}
}}

Latest revision as of 14:47, 7 September 2012

Full Name: 14-ACWTCYTGCTT,CNhs12548,BestGuess:Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer(0.685452287521708),T:142.0(2.20%),B:256.1(0.61%),P:1e-36

Motif matrix
POACGT
1105.93223.7146.395.964
27.526120.9844.978.52
357.5114.62618.31851.546
430.2465.11234.50672.136
520.5967.16641.46412.78
618.17658.7885.11259.924
79.6568.6626.958116.724
85.8227.384124.254.544
94.54478.12.69856.658
104.2648.997.66881.082
115.685.2545.396125.67

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FEV#MA0156.100.002216751.055170.9324258ACATCTTGCTTATTTCCTG-
NR3C1#MA0113.150.002630481.252110.93242511ACATCTTGCTTTCAGGACATAATGTTCCC-
YAP5#MA0417.1-50.002938321.398640.9324256ACATCTTGCTTATGCTT-
Myf#MA0055.110.004942092.35244111ACATCTTGCTTCAGCAGCTGCTG-
br_Z3#MA0012.1-10.006450173.07028110ACATCTTGCTTCTTTTAGTTTA-
SPI1#MA0080.200.007331293.4896917ACATCTTGCTTACTTCCT-
IXR1#MA0323.140.009466124.50588111ACATCTTGCTTCCCCGCTTCCGGCTT-
Dof2#MA0020.1-60.01071935.102415ACATCTTGCTTTGCTTT-
mirr#MA0233.1-60.01119155.3271515ACATCTTGCTTTGTTT-
ELF5#MA0136.110.01249015.9452718ACATCTTGCTTTACTTCCTT+
PEND#MA0127.100.01687128.03067110ACATCTTGCTTACTTCTTATT+
ara#MA0210.1-60.02042879.7240615ACATCTTGCTTTGTTA-
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