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MacroAPE 1083:11-AGGCAGTACCTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;3277.12;234.08;353.248;391.552!2;366.016;187.264;3460.128;242.592!3;472.416;314.944;3089.856;378.784!4;442.624;3196.256;314.944;302.176!5;32...")
 
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73!10429-106D6;0.0976322!10464-106H5;0.272032!10827-111C8;0.0575044!10789-110H6;0.223163!10828-111C9;0.287062!10788-110H5;0.45804!10792-110H9;0.223317!10765-110E9;0.36069!10829-111D1;0.277807!10830-111D2;0.0977618!10831-111D3;0.589985!10832-111D4;0.391428!10833-111D5;0.225694!10764-110E8;0.094349!10770-110F5;0.596811!10399-106A3;0.215004!10400-106A4;0.110125!10405-106A9;0.175295!10834-111D6;0.127067!10835-111D7;0.212768!10836-111D8;0.0370406!10837-111D9;0.0146852!10699-109G6;0.111869!10802-111A1;0.301527!10796-110I4;0.0349307!10010-101C1;0.00168152!10810-111A9;0.0166997!10421-106C7;0.00605896!10708-109H6;0.0926701!12235-129G3;0.00772714!12236-129G4;0.0155414!12237-129G5;0.158654!10167-103B5;0.0315021!10151-102I7;0.278117!10428-106D5;0.28646!10795-110I3;0.397667!10805-111A4;0.0818206!10052-101G7;0.000145879!10189-103D9;0.0281493!10589-108D4;0.00073061!10425-106D2;0.00711258!10427-106D4;0.461646!10702-109G9;0.539557!10432-106D9;0.0213121!10496-107C1;0.170946!10718-109I7;0.00336631!10011-101C2;0.0590312!10053-101G8;0.0130568!10686-109F2;0.146092!10084-102B3;0.350562!10012-101C3;0.44162!10085-102B4;0.272831!10482-107A5;0.672696!10419-106C5;0.000587826!10080-102A8;6.6481e-07!10760-110E4;0.124828!10709-109H7;0.00251988!10710-109H8;0.00169616!10703-109H1;0.00262013!10719-109I8;0.000171603!10642-109A3;0.0258162!10177-103C6;0.0289009!10164-103B2;0.277743!10173-103C2;0.341954!10166-103B4;0.819282!10083-102B2;0.635821!10188-103D8;0.717558!10552-107I3;0.263029!10553-107I4;0.00107034!10013-101C4;0.0916923!10536-107G5;0.0660635!10618-108G6;0.298432!10423-106C9;0.0828404!10785-110H2;0.00755777!12238-129G6;0.051581!12239-129G7;0.000683521!12240-129G8;0.00448726!10416-106C2;0.000242166!10801-110I9;0.094959!10766-110F1;0.142592!10824-111C5;0.352552!10825-111C6;0.0244918!10826-111C7;0.029087!10454-106G4;0.0345184!10409-106B4;0.00103768!10638-108I8;0.0912348!10636-108I6;0.0274929!10513-107D9;0.133831!10420-106C6;0.00247229!10082-102B1;0.0266279!10014-101C5;0.082645!10070-101I7;0.0315648!10452-106G2;0.00242702!10453-106G3;0.0399337!10449-106F8;0.0253274!10042-101F6;0.0246269!10069-101I6;0.216569!10193-103E4;0.0938111!10631-108I1;0.270817!10438-106E6;0.138625!10488-107B2;0.0377565!10196-103E7;0.000201353!10071-101I8;0.131859!10071-101I8;0.0081874!10041-101F5;0.646009!10451-106G1;0.0277163!10450-106F9;0.0148969!10604-108F1;0.0179182!10605-108F2;0.0405478!10606-108F3;0.103772!10603-108E9;0.0334358!10497-107C2;0.0455441!10448-106F7;0.00983775!10643-109A4;0.0109402!10426-106D3;0.00850932!10431-106D8;0.0127258!10197-103E8;0.0205974!10443-106F2;0.128101!10815-111B5;0.00318849!10816-111B6;5.40924e-05!10817-111B7;5.64559e-05!10015-101C6;6.4298e-05!10410-106B5;0.0584967!10054-101G9;0.00658366!10758-110E2;0.172633!10711-109H9;0.890436!10040-101F4;0.170618!10470-106I2;0.38907!10415-106C1;0.000291983!10198-103E9;0.20749!10614-108G2;0.130114!10612-108F9;0.400387!10549-107H9;0.000141166!10615-108G3;0.0302323!10487-107B1;0.152129!10433-106E1;0.11233!10688-109F4;0.182659!10444-106F3;0.000478538!10444-106F3;0.30303!10485-107A8;0.367634!10413-106B8;0.0577059!10175-103C4;0.163338!10161-103A8;0.3241!12131-128D7;0.25861!10624-108H3;0.301325!10712-109I1;0.91965!10205-103F7;0.340454!10206-103F8;0.0551545!10207-103F9;0.0487684!10050-101G5;0.0552173!10051-101G6;0.493701!10016-101C7;0.203752!10046-101G1;0.0875427!10778-110G4;0.0792422!10633-108I3;0.0809374!10818-111B8;0.0446406!10819-111B9;2.9271e-05!10820-111C1;3.32171e-05!10484-107A7;2.60436e-05!10808-111A7;0.00478897!10169-103B7;0.0577782!10153-102I9;0.356348!13425-144D5;0.246769!13433-144E4;0.0411189!13437-144E8;0.00666164!11904-125F5;0.0121695!11905-125F6;0.949604!10039-101F3;0.919227!10791-110H8;0.421367!10017-101C8;0.0068304!10045-101F9;0.579577!10509-107D5;0.250328!10839-111E2;0.145325!10692-109F8;0.130735!10079-102A7;0.0608197!10078-102A6;0.0628793!10721-110A1;0.0902156!10569-108B2;9.28824e-05!10570-108B3;0.285586!10571-108B4;0.169301!10647-109A8;0.302125!10752-110D5;0.0353236!10782-110G8;0.0274914!10726-110A6;0.932432!10018-101C9;0.548564!10086-102B5;0.311602!10182-103D2;0.103889!10165-103B3;0.287681!10499-107C4;0.232247!10408-106B3;0.0915243!10019-101D1;0.0584618!10068-101I5;0.018994!10075-102A3;0.0165809!10077-102A5;0.0274139!10727-110A7;1.37927e-05!10775-110G1;0.518535!10412-106B7;0.476686!12231-129F8;0.0305588!12232-129F9;0.281878!12233-129G1;0.127943!12234-129G2;0.29197!10414-106B9;0.303949!10170-103B8;1.44913e-05!10183-103D3;0.46375!10150-102I6;0.385136!10174-103C3;0.33481!10155-103A2;0.292105!10038-101F2;0.184722!10838-111E1;0.240315!10759-110E3;0.0113502!10514-107E1;0.0597081!10465-106H6;0.100911!10691-109F7;0.0161754!10843-111E6;0.817488!10844-111E7;0.00048587!11747-123G1;0.00246193!11748-123G2;0.336346!11749-123G3;0.930779!11750-123G4;0.310197!11751-123G5;0.126574!11840-124H4;0.131809!11752-123G6;0.291455!11753-123G7;0.144009!11754-123G8;0.423472!11755-123G9;0.160565!11756-123H1;0.0655106!11833-124G6;0.0263133!11760-123H5;0.0640018!11836-124G9;0.072688!11758-123H3;0.0832858!11835-124G8;0.0385411!11762-123H7;0.0166221!11838-124H2;0.00860589!11757-123H2;0.00535059!11759-123H4;0.136478!11761-123H6;0.0791732!11842-124H6;0.0264296!11837-124H1;0.160255!10568-108B1;0.0223303!13230-141I8;0.908921!13231-141I9;0.257281!10696-109G3;0.478928!10493-107B7;0.350408!10494-107B8;0.00779534!10850-111F4;0.0181727!10851-111F5;0.00386567!10852-111F6;0.00207233!10853-111F7;0.236009!10854-111F8;0.0169656!10855-111F9;0.0450519!10856-111G1;0.217799!10847-111F1;0.000188188!10846-111E9;0.438528!10848-111F2;0.017749!10845-111E8;0.0355829!10857-111G2;0.00648215!10858-111G3;0.0170034!10156-103A3;0.0598237!11901-125F2;0.350293!11902-125F3;0.879859!11903-125F4;0.360071!10689-109F5;0.691705!10648-109A9;0.152675!10784-110H1;0.000216981!10744-110C6;0.0836059!10772-110F7;0.266448!10474-106I6;0.278112!10600-108E6;0.368943!10684-109E9;0.936969!12226-129F3;0.249096!12227-129F4;0.211275!10508-107D4;0.661185!10539-107G8;0.167149!10607-108F4;0.0358327!10555-107I6;0.0152306!10774-110F9;0.257146!10637-108I7;0.0879565!10663-109C6;0.304104!10728-110A8;0.0529707!10729-110A9;0.0787901!10430-106D7;0.320366!10730-110B1;0.0879714!10813-111B3;0.00721665!10812-111B2;0.307857!10037-101F1;0.215219!10172-103C1;0.37631!10163-103B1;0.551223!10076-102A4;0.342143!10073-102A1;0.39371!10036-101E9;0.745705!10195-103E6;0.496157!10277-104E7;0.327596!10434-106E2;0.187414!10550-107I1;0.000373549!10545-107H5;0.00274544!10544-107H4;0.127419!10704-109H2;0.0254523!10510-107D6;0.73796!10558-107I9;0.433499!10020-101D2;0.394194!10732-110B3;0.220594!10049-101G4;0.781175!10698-109G5;0.777091!10437-106E5;0.0498082!10417-106C3;0.994885!10035-101E8;0.0913926!10171-103B9;0.40358!10157-103A4;0.495987!10034-101E7;0.348196!10072-101I9;0.389469!10199-103F1;0.706199!10200-103F2;0.522605!10697-109G4;0.12325!10723-110A3;0.168618!10179-103C8;0.0107303!10160-103A7;0.417972!10180-103C9;0.468869!10162-103A9;0.930085!10021-101D3;0.920779!10840-111E3;0.00614037!10706-109H4;0.369129!10033-101E6;0.788694!10032-101E5;0.363762!10490-107B4;0.435808!10439-106E7;0.00161602!10022-101D4;0.000618214!10176-103C5;0.12991!10469-106I1;0.417367!10067-101I4;0.0791606!10411-106B6;0.0235566!10471-106I3;0.219341!10030-101E3;0.144712!10475-106I7;0.24431!10787-110H4;0.000316389!10477-106I9;0.00177703!10695-109G2;0.191253!11771-123I7;0.487364!11772-123I8;0.0852579!11773-123I9;0.328392!10093-102C3;0.191593!10442-106F1;0.745826!10442-106F1;0.106829!10201-103F3;0.194697!10639-108I9;0.0841795!11843-124H7;0.00992351!11841-124H5;0.532668!10693-109F9;0.184636!10436-106E4;0.00924903!10483-107A6;0.00123471!10282-104F3;0.0186796!10023-101D5;0.270976!10066-101I3;0.223483!10065-101I2;0.0886514!10800-110I8;0.07824!10610-108F7;0.00234593!10841-111E4;0.00989733!10541-107H1;0.00132987!10842-111E5;0.0137818!10562-108A4;0.0184261!10024-101D6;0.000821368!10064-101I1;0.0505209!10609-108F6;0.00718748!10048-101G3;0.000132092!10781-110G7;0.0232838!10181-103D1;0.000490475!10159-103A6;0.18477!10056-101H2;0.119794!10737-110B8;0.212725!10025-101D7;0.492227!10044-101F8;0.00122659!10424-106D1;0.00605682!10463-106H4;0.234373!10616-108G4;0.000733954!10486-107A9;0.383317!10062-101H8;0.00115297!10202-103F4;0.0261515!10158-103A5;0.417153!10441-106E9;0.153112!10031-101E4;0.0294444!10063-101H9;0.456317!10063-101H9;0.731977!11763-123H8;0.0177392!11765-123I1;0.358726!11768-123I4;0.130447!10807-111A6;0.148773!10790-110H7;0.11524!10798-110I6;0.0320399!10786-110H3;0.975942!10591-108D6;0.140424!10593-108D8;0.0515446!10590-108D5;0.368531!10026-101D8;0.0121754!10096-102C6;0.730499!10168-103B6;0.00135549!10154-103A1;0.252887!10209-103G2;0.19086!10061-101H7;0.282676!10027-101D9;0.196339!10043-101F7;0.829996!10783-110G9;0.0421663!10028-101E1;0.350696!10060-101H6;0.52103!10203-103F5;0.280474!10059-101H5;0.248291!10047-101G2;0.125494!10029-101E2;0.251105!10058-101H4;0.138761!10418-106C4;0.196486!10492-107B6;0.0448359!10694-109G1;0.0918413!10797-110I5;0.499941!10057-101H3;0.400674!10100-102D1;0.0996547!10055-101H1;0.0676329!10204-103F6;0.0738252!10191-103E2;0.0311854!10563-108A5;0.00533504
|name=11-AGGCAGTACCTC,CNhs13493,BestGuess:ETV7_si_HM09(0.609389946537654),T:4256.0(60.40%),B:22100.9(52.82%),P:1e-37
|name=11-AGGCAGTACCTC,CNhs13493,BestGuess:ETV7_si_HM09(0.609389946537654),T:4256.0(60.40%),B:22100.9(52.82%),P:1e-37
|tomtom_result=SPI1#MA0080.2;0;0.00316985;1.50885;1;7;AGGCAGTACCTC;AGGAAGT;+!ELF5#MA0136.1;1;0.0148103;7.04969;1;8;AGGCAGTACCTC;AAGGAAGTA;-!TOD6#MA0350.1;-1;0.0190489;9.06729;1;11;AGGCAGTACCTC;AGGCACAGCTCATCGCGTTTT;+!En1#MA0027.1;0;0.0198689;9.45757;1;11;AGGCAGTACCTC;GAACACTACTT;-!FOXC1#MA0032.1;0;0.0204498;9.73411;1;8;AGGCAGTACCTC;GGTAAGTA;+
}}
}}

Latest revision as of 12:14, 7 September 2012

Full Name: 11-AGGCAGTACCTC,CNhs13493,BestGuess:ETV7_si_HM09(0.609389946537654),T:4256.0(60.40%),B:22100.9(52.82%),P:1e-37

Motif matrix
POACGT
13277.12234.08353.248391.552
2366.016187.2643460.128242.592
3472.416314.9443089.856378.784
4442.6243196.256314.944302.176
53247.328306.432387.296314.944
6404.32442.6243115.392293.664
7463.904331.968366.0163094.112
82800.448544.768442.624468.16
9340.483132.416336.224446.88
10306.4323302.656323.456323.456
11395.808306.432246.8483306.912
12331.9683289.888302.176331.968

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

SPI1#MA0080.200.003169851.5088517AGGCAGTACCTCAGGAAGT+
ELF5#MA0136.110.01481037.0496918AGGCAGTACCTCAAGGAAGTA-
TOD6#MA0350.1-10.01904899.06729111AGGCAGTACCTCAGGCACAGCTCATCGCGTTTT+
En1#MA0027.100.01986899.45757111AGGCAGTACCTCGAACACTACTT-
FOXC1#MA0032.100.02044989.7341118AGGCAGTACCTCGGTAAGTA+