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MacroAPE 1083:CNhs12574 bl f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;408.00446891077985;257.7322724902041;58.99046264174228;267.60401838313993!2;115.40960430872848;314.20053288714234;186.1469271023002;376.5741...")
 
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8-111C9;0.461491!10788-110H5;0.847305!10792-110H9;0.673845!10765-110E9;0.649354!10829-111D1;0.201429!10830-111D2;0.372816!10831-111D3;0.699222!10832-111D4;0.130227!10833-111D5;0.674348!10764-110E8;0.833041!10770-110F5;0.542349!10399-106A3;0.835614!10400-106A4;0.966491!10405-106A9;0.859084!10834-111D6;0.914231!10835-111D7;0.584619!10836-111D8;0.0179981!10837-111D9;0.129913!10699-109G6;0.181337!10802-111A1;0.900272!10796-110I4;0.538571!10010-101C1;0.0163171!10810-111A9;0.721061!10421-106C7;0.202488!10708-109H6;0.388201!12235-129G3;0.504173!12236-129G4;0.929034!12237-129G5;0.468994!10167-103B5;0.72337!10151-102I7;0.708841!10428-106D5;0.93798!10795-110I3;0.433128!10805-111A4;0.123942!10052-101G7;0.787727!10189-103D9;0.691885!10589-108D4;0.456697!10425-106D2;0.181176!10427-106D4;0.841729!10702-109G9;0.483904!10432-106D9;0.279448!10496-107C1;0.157326!10718-109I7;0.0929467!10011-101C2;0.872038!10053-101G8;0.724179!10686-109F2;0.920777!10084-102B3;0.663709!10012-101C3;0.894027!10085-102B4;0.867454!10482-107A5;0.470299!10419-106C5;0.485855!10080-102A8;0.436913!10760-110E4;0.952601!10709-109H7;0.493289!10710-109H8;0.105226!10703-109H1;0.254975!10719-109I8;0.619762!10642-109A3;0.843664!10177-103C6;0.820488!10164-103B2;0.65825!10173-103C2;0.883482!10166-103B4;0.775205!10083-102B2;0.658359!10188-103D8;0.739644!10552-107I3;0.742284!10553-107I4;0.371032!10013-101C4;0.378801!10536-107G5;0.353369!10618-108G6;0.549879!10423-106C9;0.735985!10785-110H2;0.795519!12238-129G6;0.706349!12239-129G7;0.32046!12240-129G8;0.181512!10416-106C2;0.280738!10801-110I9;0.283125!10766-110F1;0.128859!10824-111C5;0.586569!10825-111C6;0.0745299!10826-111C7;0.0478084!10454-106G4;0.0267662!10409-106B4;0.00492106!10638-108I8;0.325736!10636-108I6;0.809999!10513-107D9;0.56668!10420-106C6;0.788416!10082-102B1;0.871727!10014-101C5;0.962778!10070-101I7;0.398381!10452-106G2;0.500377!10453-106G3;0.66947!10449-106F8;0.512929!10042-101F6;0.580914!10069-101I6;0.892964!10193-103E4;0.569639!10631-108I1;0.868231!10438-106E6;0.559384!10488-107B2;0.233964!10196-103E7;0.885348!10071-101I8;0.528303!10071-101I8;0.156507!10041-101F5;0.341605!10451-106G1;0.958166!10450-106F9;0.259411!10604-108F1;0.327689!10605-108F2;0.787256!10606-108F3;0.974898!10603-108E9;0.921368!10497-107C2;0.396794!10448-106F7;0.592037!10643-109A4;0.82372!10426-106D3;0.432792!10431-106D8;0.214387!10197-103E8;0.386987!10443-106F2;0.206958!10815-111B5;0.624752!10816-111B6;0.0202814!10817-111B7;0.0361738!10015-101C6;0.0380242!10410-106B5;0.80759!10054-101G9;0.529504!10758-110E2;0.368627!10711-109H9;0.68607!10040-101F4;0.289039!10470-106I2;0.722248!10415-106C1;0.697798!10198-103E9;0.677388!10614-108G2;0.333217!10612-108F9;0.903137!10549-107H9;0.285822!10615-108G3;0.960567!10487-107B1;0.924064!10433-106E1;0.01281!10688-109F4;0.794903!10444-106F3;0.0965168!10444-106F3;0.710857!10485-107A8;0.862244!10413-106B8;0.398891!10175-103C4;0.863941!10161-103A8;0.612444!12131-128D7;0.976797!10624-108H3;0.727417!10712-109I1;0.977144!10205-103F7;0.875889!10206-103F8;0.273692!10207-103F9;0.226618!10050-101G5;0.572916!10051-101G6;0.379373!10016-101C7;0.49717!10046-101G1;0.386953!10778-110G4;0.147242!10633-108I3;0.102603!10818-111B8;0.181884!10819-111B9;0.923753!10820-111C1;0.812418!10484-107A7;0.863674!10808-111A7;0.216781!10169-103B7;0.120735!10153-102I9;0.625394!13425-144D5;0.898337!13433-144E4;0.965872!13437-144E8;0.986807!11904-125F5;0.921578!11905-125F6;0.936106!10039-101F3;0.956665!10791-110H8;0.725825!10017-101C8;0.126248!10045-101F9;0.533088!10509-107D5;0.39562!10839-111E2;0.234342!10692-109F8;0.660366!10079-102A7;0.869556!10078-102A6;0.654415!10721-110A1;0.348298!10569-108B2;0.0686022!10570-108B3;0.563276!10571-108B4;0.719436!10647-109A8;0.604566!10752-110D5;0.210788!10782-110G8;0.277042!10726-110A6;0.182434!10018-101C9;0.800533!10086-102B5;0.147819!10182-103D2;0.233954!10165-103B3;0.493968!10499-107C4;0.473247!10408-106B3;0.791677!10019-101D1;0.0372876!10068-101I5;0.24314!10075-102A3;0.118476!10077-102A5;0.265767!10727-110A7;0.583564!10775-110G1;0.0726326!10412-106B7;0.220887!12231-129F8;0.692455!12232-129F9;0.606934!12233-129G1;0.568283!12234-129G2;0.649426!10414-106B9;0.635003!10170-103B8;0.954056!10183-103D3;0.526793!10150-102I6;0.717538!10174-103C3;0.863659!10155-103A2;0.720159!10038-101F2;0.576861!10838-111E1;0.85201!10759-110E3;0.814872!10514-107E1;0.478611!10465-106H6;0.837322!10691-109F7;0.583117!10843-111E6;0.760794!10844-111E7;0.797241!11747-123G1;0.948575!11748-123G2;0.928695!11749-123G3;0.0710483!11750-123G4;0.804339!11751-123G5;0.996797!11840-124H4;0.570774!11752-123G6;0.865081!11753-123G7;0.846891!11754-123G8;0.62044!11755-123G9;0.651407!11756-123H1;0.512241!11833-124G6;0.221001!11760-123H5;0.394059!11836-124G9;0.518081!11758-123H3;0.390054!11835-124G8;0.0527861!11762-123H7;0.154165!11838-124H2;0.0128976!11757-123H2;0.130601!11759-123H4;0.69851!11761-123H6;0.209541!11842-124H6;0.0466896!11837-124H1;0.601275!10568-108B1;0.103418!13230-141I8;0.172447!13231-141I9;0.0536056!10696-109G3;0.0573489!10493-107B7;0.912287!10494-107B8;0.916579!10850-111F4;0.992901!10851-111F5;0.377691!10852-111F6;0.917539!10853-111F7;0.894896!10854-111F8;0.967495!10855-111F9;0.488698!10856-111G1;0.683395!10847-111F1;0.548378!10846-111E9;0.340146!10848-111F2;0.22646!10845-111E8;0.219799!10857-111G2;0.555785!10858-111G3;0.608706!10156-103A3;0.8895!11901-125F2;0.930232!11902-125F3;0.545341!11903-125F4;0.675216!10689-109F5;0.630153!10648-109A9;0.621946!10784-110H1;0.518661!10744-110C6;0.0743348!10772-110F7;0.168681!10474-106I6;0.365705!10600-108E6;0.243551!10684-109E9;0.832856!12226-129F3;0.0339039!12227-129F4;0.146518!10508-107D4;0.290563!10539-107G8;0.0574146!10607-108F4;0.917428!10555-107I6;0.605518!10774-110F9;0.662955!10637-108I7;0.554171!10663-109C6;0.309741!10728-110A8;0.63809!10729-110A9;0.910673!10430-106D7;0.517629!10730-110B1;0.778447!10813-111B3;0.178754!10812-111B2;0.567538!10037-101F1;0.169484!10172-103C1;0.915141!10163-103B1;0.8879!10076-102A4;0.986073!10073-102A1;0.691829!10036-101E9;0.421213!10195-103E6;0.713011!10277-104E7;0.898282!10434-106E2;0.918484!10550-107I1;0.736515!10545-107H5;0.39441!10544-107H4;0.589452!10704-109H2;0.436664!10510-107D6;0.0278687!10558-107I9;0.952704!10020-101D2;0.81245!10732-110B3;0.15849!10049-101G4;0.305303!10698-109G5;0.692258!10437-106E5;0.13993!10417-106C3;0.749576!10035-101E8;0.240934!10171-103B9;0.8461!10157-103A4;0.559667!10034-101E7;0.991405!10072-101I9;0.663129!10199-103F1;0.299142!10200-103F2;0.299694!10697-109G4;0.446161!10723-110A3;0.00090021!10179-103C8;0.57165!10160-103A7;0.232057!10180-103C9;0.360091!10162-103A9;0.565513!10021-101D3;0.987042!10840-111E3;0.48759!10706-109H4;0.449667!10033-101E6;0.0884259!10032-101E5;0.565021!10490-107B4;0.711614!10439-106E7;0.173023!10022-101D4;0.651847!10176-103C5;0.53973!10469-106I1;0.902012!10067-101I4;0.885816!10411-106B6;0.401105!10471-106I3;0.48462!10030-101E3;0.953108!10475-106I7;0.665612!10787-110H4;0.999933!10477-106I9;0.307293!10695-109G2;0.968942!11771-123I7;0.211762!11772-123I8;0.897021!11773-123I9;0.682599!10093-102C3;0.853741!10442-106F1;0.268225!10442-106F1;0.929893!10201-103F3;0.869314!10639-108I9;0.429453!11843-124H7;0.807308!11841-124H5;0.55145!10693-109F9;0.62362!10436-106E4;0.761886!10483-107A6;0.0106711!10282-104F3;0.187169!10023-101D5;0.921846!10066-101I3;0.860444!10065-101I2;0.81106!10800-110I8;0.148389!10610-108F7;0.876715!10841-111E4;0.7375!10541-107H1;0.0639629!10842-111E5;0.846801!10562-108A4;0.85702!10024-101D6;0.960965!10064-101I1;0.274063!10609-108F6;0.099783!10048-101G3;0.777134!10781-110G7;0.498249!10181-103D1;0.751887!10159-103A6;0.526916!10056-101H2;0.991283!10737-110B8;0.293686!10025-101D7;0.113912!10044-101F8;0.887425!10424-106D1;0.686404!10463-106H4;0.355952!10616-108G4;0.653418!10486-107A9;0.214361!10062-101H8;0.0607214!10202-103F4;0.360261!10158-103A5;0.698002!10441-106E9;0.89473!10031-101E4;0.967365!10063-101H9;0.746711!10063-101H9;0.362615!11763-123H8;0.189948!11765-123I1;0.214332!11768-123I4;0.45826!10807-111A6;0.606665!10790-110H7;0.709373!10798-110I6;0.815804!10786-110H3;0.189632!10591-108D6;0.991641!10593-108D8;0.53165!10590-108D5;0.879158!10026-101D8;0.681369!10096-102C6;0.0385326!10168-103B6;0.099884!10154-103A1;0.400896!10209-103G2;0.984306!10061-101H7;0.542832!10027-101D9;0.488727!10043-101F7;0.625963!10783-110G9;0.370306!10028-101E1;0.819598!10060-101H6;0.353254!10203-103F5;0.774339!10059-101H5;0.703158!10047-101G2;0.801222!10029-101E2;0.770133!10058-101H4;0.47273!10418-106C4;0.530356!10492-107B6;0.849251!10694-109G1;0.29517!10797-110I5;0.876859!10057-101H3;0.977282!10100-102D1;0.330167!10055-101H1;0.623625!10204-103F6;0.413204!10191-103E2;0.923735!10563-108A5;0.667536
|name=CNhs12574_bl_f1
|name=CNhs12574_bl_f1
|tomtom_result=SFP1#MA0378.1;2;0.000991635;0.472018;0.944037;10;ATAGAAAAGT;ATTGAAAAAAATTTTCTACGG;+!EDS1#MA0294.1;-1;0.00510346;2.42925;1;9;ATAGAAAAGT;CGGAAAAAT;+!TBP#MA0108.2;0;0.00566929;2.69858;1;10;ATAGAAAAGT;GTATAAAAGGCGGGG;+!TBP#MA0108.2;0;0.00613393;2.91975;1;10;ATAGAAAAGT;GTATAAAAGGCGGGG;+!HMG-I/Y#MA0045.1;6;0.00867114;4.12746;1;10;ATAGAAAAGT;CAACAAATGGAAAAAC;+!SFL1#MA0377.1;6;0.00916025;4.36028;1;10;ATAGAAAAGT;TAGAGAATAGAAGAAATAAAA;+!NHP6A#MA0345.1;9;0.00989025;4.70776;1;10;ATAGAAAAGT;ATGACCTATATATAAAAATGA;+!sd#MA0243.1;1;0.0113738;5.41392;1;10;ATAGAAAAGT;CCGAGGAATGTC;-!NFATC2#MA0152.1;-1;0.0117543;5.59503;1;7;ATAGAAAAGT;TGGAAAA;-!STB3#MA0390.1;4;0.0133386;6.3492;1;10;ATAGAAAAGT;CCAGAGTGAAAAATTTTGGAC;-!RGT1#MA0367.1;0;0.0135298;6.44017;1;10;ATAGAAAAGT;CCGGAAAAACT;-!STAT1#MA0137.2;6;0.0139263;6.62893;1;9;ATAGAAAAGT;GGTTTCCGGGAAATG;-!tll#MA0459.1;-4;0.0177356;8.44215;1;6;ATAGAAAAGT;AAAAGTCAAA;+
}}
}}

Latest revision as of 12:16, 7 September 2012

Full Name: CNhs12574_bl_f1

Motif matrix
POACGT
1408.00446891077985257.732272490204158.99046264174228267.60401838313993
2115.40960430872848314.20053288714234186.1469271023002376.5741581276951
3387.19459386053152.5765549956826637265.59547659907463336.9645969705779
41.0180018521118334.401499637521499582.1923862050097404.71933473122226
5990.56701235104150.343408239077560131.27825977107217640.14254206467453145
6991.30079611141560.0467703730144688260.342777353210555140.6408785882251511
7586.77368082477792.6317501879812126399.248869886126333.6769215269804167
8564.53762178339722.7187407376128445212.0212670210713213.05359288378446
9306.4205252780596435.49707197164481482.66246460591753167.75116057024454
10196.62344902663563181.9222228909046155.91631173132097457.8692387770051

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SFP1#MA0378.120.0009916350.4720180.94403710ATAGAAAAGTATTGAAAAAAATTTTCTACGG+
EDS1#MA0294.1-10.005103462.4292519ATAGAAAAGTCGGAAAAAT+
TBP#MA0108.200.005669292.69858110ATAGAAAAGTGTATAAAAGGCGGGG+
TBP#MA0108.200.006133932.91975110ATAGAAAAGTGTATAAAAGGCGGGG+
HMG-I/Y#MA0045.160.008671144.12746110ATAGAAAAGTCAACAAATGGAAAAAC+
SFL1#MA0377.160.009160254.36028110ATAGAAAAGTTAGAGAATAGAAGAAATAAAA+
NHP6A#MA0345.190.009890254.70776110ATAGAAAAGTATGACCTATATATAAAAATGA+
sd#MA0243.110.01137385.41392110ATAGAAAAGTCCGAGGAATGTC-
NFATC2#MA0152.1-10.01175435.5950317ATAGAAAAGTTGGAAAA-
STB3#MA0390.140.01333866.3492110ATAGAAAAGTCCAGAGTGAAAAATTTTGGAC-
RGT1#MA0367.100.01352986.44017110ATAGAAAAGTCCGGAAAAACT-
STAT1#MA0137.260.01392636.6289319ATAGAAAAGTGGTTTCCGGGAAATG-
tll#MA0459.1-40.01773568.4421516ATAGAAAAGTAAAAGTCAAA+
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