MCL coexpression mm9:25: Difference between revisions
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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005882;intermediate filament;7.3549147736437e-64;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0045111;intermediate filament cytoskeleton;1.32541180148492e-63;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0043228;non-membrane-bound organelle;3.38792945487264e-40;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0043232;intracellular non-membrane-bound organelle;3.38792945487264e-40;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0044430;cytoskeletal part;1.26064542639407e-36;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0005856;cytoskeleton;4.18223790462724e-31;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0044446;intracellular organelle part;2.81554064617452e-23;75586,170654,406222,56735,23927,223915,320864,16667,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,15422,69473,71888,13393,100040249,110805,109052,170651,70843!GO:0044422;organelle part;3.33973356354225e-23;75586,170654,406222,56735,23927,223915,320864,16667,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,15422,69473,71888,13393,100040249,110805,109052,170651,70843!GO:0005200;structural constituent of cytoskeleton;1.24589505897003e-07;16679,16671,16670,56735,16681,16667,16675,16660,16672!GO:0007398;ectoderm development;6.91312129881865e-06;56735,170656,110805,13711,73720,16667,16769,93746!GO:0042633;hair cycle;7.66193412334679e-06;16667,16769,56735,93746,170656,110805!GO:0042303;molting cycle;7.66193412334679e-06;16667,16769,56735,93746,170656,110805!GO:0008544;epidermis development;5.90798655956809e-05;16667,16769,56735,93746,170656,110805,73720!GO:0007010;cytoskeleton organization and biogenesis;7.42731875068514e-05;16679,16671,16670,56735,16681,209239,14260,16667,17909,16675,16660,99681,16672!GO:0022405;hair cycle process;0.000106792606432362;16667,16769,56735,170656,110805!GO:0022404;molting cycle process;0.000106792606432362;16667,16769,56735,170656,110805!GO:0001942;hair follicle development;0.000106792606432362;16667,16769,56735,170656,110805!GO:0030057;desmosome;0.00170072078226722;13510,16769,56460!GO:0014704;intercalated disc;0.00327150234971774;13510,14621,16769,56460!GO:0009055;electron carrier activity;0.00333241469050739;77917,20197,50493,77922,77215,77921!GO:0048730;epidermis morphogenesis;0.00418920909595626;16667,56735,93746,110805!GO:0009888;tissue development;0.00505423165809232;56735,170656,110805,13711,73720,16667,16769,93746!GO:0006118;electron transport;0.00885321991056762;77922,77215,77921,77917,20197,11688,50493,13108!GO:0007160;cell-matrix adhesion;0.00885321991056762;77917,74769,77922,77921!GO:0031589;cell-substrate adhesion;0.0108303959010083;77917,74769,77922,77921!GO:0043229;intracellular organelle;0.0127749956756336;75586,170654,406222,56735,13711,23927,223915,320864,16667,14260,76444,26560,16675,16660,68484,16694,21786,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16679,16671,406221,16681,64144,70810,268905,67112,100126226,237934,114566,16703,16701,77918,15422,56460,69473,13108,71888,13393,100040249,110805,73720,109052,21873,170651,70843,69743!GO:0043226;organelle;0.0127749956756336;75586,170654,406222,56735,13711,23927,223915,320864,16667,14260,76444,26560,16675,16660,68484,16694,21786,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16679,16671,406221,16681,64144,70810,268905,67112,100126226,237934,114566,16703,16701,77918,15422,56460,69473,13108,71888,13393,100040249,110805,73720,109052,21873,170651,70843,69743!GO:0048729;tissue morphogenesis;0.0138875204135743;16667,56735,93746,110805!GO:0008305;integrin complex;0.0142003339428833;77917,77922,77921!GO:0044424;intracellular part;0.0158099712850148;75586,241196,170654,406222,13711,23927,223915,320864,14260,26560,16675,16660,74769,16694,64818,16670,53617,66708,406219,16671,16681,70810,268905,100126226,114566,16703,77918,15422,69473,13108,71888,26394,18601,110805,21873,170651,69743,56735,16667,76444,68484,21786,209239,17702,17909,16672,223917,71363,406221,16679,64144,67112,237934,16701,11688,328329,56460,13393,100040249,109052,73720,70843,50493!GO:0045109;intermediate filament organization;0.0158099712850148;16667,99681!GO:0042640;anagen;0.0178978350578192;16769,170656!GO:0043296;apical junction complex;0.0198011657526371;21873,13510,16769,56460!GO:0005911;intercellular junction;0.0204201831367928;21873,13510,14621,16769,56460!GO:0016327;apicolateral plasma membrane;0.0204201831367928;21873,13510,16769,56460!GO:0005622;intracellular;0.0204201831367928;75586,241196,170654,406222,13711,23927,223915,320864,14260,26560,16675,16660,74769,16694,64818,16670,53617,66708,406219,16671,16681,70810,268905,114566,100126226,16703,77918,60594,15422,69473,13108,71888,26394,18601,110805,21873,170651,69743,56735,16667,76444,68484,21786,209239,17702,17909,16672,223917,71363,406221,16679,64144,67112,237934,16701,11688,328329,56460,13393,100040249,109052,73720,70843,50493!GO:0009266;response to temperature stimulus;0.0255201984713983;77917,77921,246788!GO:0048820;hair follicle maturation;0.0259532986149343;16769,170656!GO:0006091;generation of precursor metabolites and energy;0.0269838910043922;77922,77215,77921,77917,20197,11688,50493,13108!GO:0031069;hair follicle morphogenesis;0.0286927794010247;56735,110805!GO:0045104;intermediate filament cytoskeleton organization and biogenesis;0.039283719139241;16667,99681!GO:0016491;oxidoreductase activity;0.0395994436296449;109232,77922,77215,66065,77921,100417514,77917,20197,50493,11688,13108!GO:0047677;arachidonate 8-lipoxygenase activity;0.0454481574202216;11688!GO:0031077;post-embryonic camera-type eye development;0.0454481574202216;170656!GO:0051127;positive regulation of actin nucleation;0.0454481574202216;14260!GO:0051125;regulation of actin nucleation;0.0454481574202216;14260!GO:0050473;arachidonate 15-lipoxygenase activity;0.0454481574202216;11688!GO:0043480;pigment accumulation in tissues;0.0454481574202216;170656!GO:0004416;hydroxyacylglutathione hydrolase activity;0.0454481574202216;14651!GO:0045103;intermediate filament-based process;0.0457359011923762;16667,99681!}} | {{MCL_coexpression_mm9 | ||
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| |||
|gostat_on_MCL_coexpression=GO:0005882;intermediate filament;7.3549147736437e-64;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0045111;intermediate filament cytoskeleton;1.32541180148492e-63;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0043228;non-membrane-bound organelle;3.38792945487264e-40;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0043232;intracellular non-membrane-bound organelle;3.38792945487264e-40;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0044430;cytoskeletal part;1.26064542639407e-36;75586,170654,406222,56735,23927,223915,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,69473,71888,100040249,109052,170651,70843!GO:0005856;cytoskeleton;4.18223790462724e-31;75586,170654,406222,56735,23927,223915,14260,16667,320864,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,268905,100126226,237934,114566,16703,16701,77918,56460,69473,71888,100040249,73720,109052,170651,70843!GO:0044446;intracellular organelle part;2.81554064617452e-23;75586,170654,406222,56735,23927,223915,320864,16667,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,15422,69473,71888,13393,100040249,110805,109052,170651,70843!GO:0044422;organelle part;3.33973356354225e-23;75586,170654,406222,56735,23927,223915,320864,16667,76444,26560,16675,16660,68484,16694,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16671,406221,16679,16681,70810,67112,268905,100126226,237934,114566,16703,16701,77918,15422,69473,71888,13393,100040249,110805,109052,170651,70843!GO:0005200;structural constituent of cytoskeleton;1.24589505897003e-07;16679,16671,16670,56735,16681,16667,16675,16660,16672!GO:0007398;ectoderm development;6.91312129881865e-06;56735,170656,110805,13711,73720,16667,16769,93746!GO:0042633;hair cycle;7.66193412334679e-06;16667,16769,56735,93746,170656,110805!GO:0042303;molting cycle;7.66193412334679e-06;16667,16769,56735,93746,170656,110805!GO:0008544;epidermis development;5.90798655956809e-05;16667,16769,56735,93746,170656,110805,73720!GO:0007010;cytoskeleton organization and biogenesis;7.42731875068514e-05;16679,16671,16670,56735,16681,209239,14260,16667,17909,16675,16660,99681,16672!GO:0022405;hair cycle process;0.000106792606432362;16667,16769,56735,170656,110805!GO:0022404;molting cycle process;0.000106792606432362;16667,16769,56735,170656,110805!GO:0001942;hair follicle development;0.000106792606432362;16667,16769,56735,170656,110805!GO:0030057;desmosome;0.00170072078226722;13510,16769,56460!GO:0014704;intercalated disc;0.00327150234971774;13510,14621,16769,56460!GO:0009055;electron carrier activity;0.00333241469050739;77917,20197,50493,77922,77215,77921!GO:0048730;epidermis morphogenesis;0.00418920909595626;16667,56735,93746,110805!GO:0009888;tissue development;0.00505423165809232;56735,170656,110805,13711,73720,16667,16769,93746!GO:0006118;electron transport;0.00885321991056762;77922,77215,77921,77917,20197,11688,50493,13108!GO:0007160;cell-matrix adhesion;0.00885321991056762;77917,74769,77922,77921!GO:0031589;cell-substrate adhesion;0.0108303959010083;77917,74769,77922,77921!GO:0043229;intracellular organelle;0.0127749956756336;75586,170654,406222,56735,13711,23927,223915,320864,16667,14260,76444,26560,16675,16660,68484,16694,21786,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16679,16671,406221,16681,64144,70810,268905,67112,100126226,237934,114566,16703,16701,77918,15422,56460,69473,13108,71888,13393,100040249,110805,73720,109052,21873,170651,70843,69743!GO:0043226;organelle;0.0127749956756336;75586,170654,406222,56735,13711,23927,223915,320864,16667,14260,76444,26560,16675,16660,68484,16694,21786,64818,16670,209239,17909,17702,53617,16672,66708,406219,71363,223917,16679,16671,406221,16681,64144,70810,268905,67112,100126226,237934,114566,16703,16701,77918,15422,56460,69473,13108,71888,13393,100040249,110805,73720,109052,21873,170651,70843,69743!GO:0048729;tissue morphogenesis;0.0138875204135743;16667,56735,93746,110805!GO:0008305;integrin complex;0.0142003339428833;77917,77922,77921!GO:0044424;intracellular part;0.0158099712850148;75586,241196,170654,406222,13711,23927,223915,320864,14260,26560,16675,16660,74769,16694,64818,16670,53617,66708,406219,16671,16681,70810,268905,100126226,114566,16703,77918,15422,69473,13108,71888,26394,18601,110805,21873,170651,69743,56735,16667,76444,68484,21786,209239,17702,17909,16672,223917,71363,406221,16679,64144,67112,237934,16701,11688,328329,56460,13393,100040249,109052,73720,70843,50493!GO:0045109;intermediate filament organization;0.0158099712850148;16667,99681!GO:0042640;anagen;0.0178978350578192;16769,170656!GO:0043296;apical junction complex;0.0198011657526371;21873,13510,16769,56460!GO:0005911;intercellular junction;0.0204201831367928;21873,13510,14621,16769,56460!GO:0016327;apicolateral plasma membrane;0.0204201831367928;21873,13510,16769,56460!GO:0005622;intracellular;0.0204201831367928;75586,241196,170654,406222,13711,23927,223915,320864,14260,26560,16675,16660,74769,16694,64818,16670,53617,66708,406219,16671,16681,70810,268905,114566,100126226,16703,77918,60594,15422,69473,13108,71888,26394,18601,110805,21873,170651,69743,56735,16667,76444,68484,21786,209239,17702,17909,16672,223917,71363,406221,16679,64144,67112,237934,16701,11688,328329,56460,13393,100040249,109052,73720,70843,50493!GO:0009266;response to temperature stimulus;0.0255201984713983;77917,77921,246788!GO:0048820;hair follicle maturation;0.0259532986149343;16769,170656!GO:0006091;generation of precursor metabolites and energy;0.0269838910043922;77922,77215,77921,77917,20197,11688,50493,13108!GO:0031069;hair follicle morphogenesis;0.0286927794010247;56735,110805!GO:0045104;intermediate filament cytoskeleton organization and biogenesis;0.039283719139241;16667,99681!GO:0016491;oxidoreductase activity;0.0395994436296449;109232,77922,77215,66065,77921,100417514,77917,20197,50493,11688,13108!GO:0047677;arachidonate 8-lipoxygenase activity;0.0454481574202216;11688!GO:0031077;post-embryonic camera-type eye development;0.0454481574202216;170656!GO:0051127;positive regulation of actin nucleation;0.0454481574202216;14260!GO:0051125;regulation of actin nucleation;0.0454481574202216;14260!GO:0050473;arachidonate 15-lipoxygenase activity;0.0454481574202216;11688!GO:0043480;pigment accumulation in tissues;0.0454481574202216;170656!GO:0004416;hydroxyacylglutathione hydrolase activity;0.0454481574202216;14651!GO:0045103;intermediate filament-based process;0.0457359011923762;16667,99681! | |||
}} |
Revision as of 11:00, 11 October 2012
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0005882 | intermediate filament | 7.3549147736437e-64 |
GO:0045111 | intermediate filament cytoskeleton | 1.32541180148492e-63 |
GO:0043228 | non-membrane-bound organelle | 3.38792945487264e-40 |
GO:0043232 | intracellular non-membrane-bound organelle | 3.38792945487264e-40 |
GO:0044430 | cytoskeletal part | 1.26064542639407e-36 |
GO:0005856 | cytoskeleton | 4.18223790462724e-31 |
GO:0044446 | intracellular organelle part | 2.81554064617452e-23 |
GO:0044422 | organelle part | 3.33973356354225e-23 |
GO:0005200 | structural constituent of cytoskeleton | 1.24589505897003e-07 |
GO:0007398 | ectoderm development | 6.91312129881865e-06 |
GO:0042633 | hair cycle | 7.66193412334679e-06 |
GO:0042303 | molting cycle | 7.66193412334679e-06 |
GO:0008544 | epidermis development | 5.90798655956809e-05 |
GO:0007010 | cytoskeleton organization and biogenesis | 7.42731875068514e-05 |
GO:0022405 | hair cycle process | 0.000106792606432362 |
GO:0022404 | molting cycle process | 0.000106792606432362 |
GO:0001942 | hair follicle development | 0.000106792606432362 |
GO:0030057 | desmosome | 0.00170072078226722 |
GO:0014704 | intercalated disc | 0.00327150234971774 |
GO:0009055 | electron carrier activity | 0.00333241469050739 |
GO:0048730 | epidermis morphogenesis | 0.00418920909595626 |
GO:0009888 | tissue development | 0.00505423165809232 |
GO:0006118 | electron transport | 0.00885321991056762 |
GO:0007160 | cell-matrix adhesion | 0.00885321991056762 |
GO:0031589 | cell-substrate adhesion | 0.0108303959010083 |
GO:0043229 | intracellular organelle | 0.0127749956756336 |
GO:0043226 | organelle | 0.0127749956756336 |
GO:0048729 | tissue morphogenesis | 0.0138875204135743 |
GO:0008305 | integrin complex | 0.0142003339428833 |
GO:0044424 | intracellular part | 0.0158099712850148 |
GO:0045109 | intermediate filament organization | 0.0158099712850148 |
GO:0042640 | anagen | 0.0178978350578192 |
GO:0043296 | apical junction complex | 0.0198011657526371 |
GO:0005911 | intercellular junction | 0.0204201831367928 |
GO:0016327 | apicolateral plasma membrane | 0.0204201831367928 |
GO:0005622 | intracellular | 0.0204201831367928 |
GO:0009266 | response to temperature stimulus | 0.0255201984713983 |
GO:0048820 | hair follicle maturation | 0.0259532986149343 |
GO:0006091 | generation of precursor metabolites and energy | 0.0269838910043922 |
GO:0031069 | hair follicle morphogenesis | 0.0286927794010247 |
GO:0045104 | intermediate filament cytoskeleton organization and biogenesis | 0.039283719139241 |
GO:0016491 | oxidoreductase activity | 0.0395994436296449 |
GO:0047677 | arachidonate 8-lipoxygenase activity | 0.0454481574202216 |
GO:0031077 | post-embryonic camera-type eye development | 0.0454481574202216 |
GO:0051127 | positive regulation of actin nucleation | 0.0454481574202216 |
GO:0051125 | regulation of actin nucleation | 0.0454481574202216 |
GO:0050473 | arachidonate 15-lipoxygenase activity | 0.0454481574202216 |
GO:0043480 | pigment accumulation in tissues | 0.0454481574202216 |
GO:0004416 | hydroxyacylglutathione hydrolase activity | 0.0454481574202216 |
GO:0045103 | intermediate filament-based process | 0.0457359011923762 |
Relative expression of the co-expression cluster over median <br>Analyst:
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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
Ontology term | p-value | n |
---|
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
{{{tfbs_overrepresentation_jaspar}}} |