MCL coexpression mm9:2853: Difference between revisions

Revision as of 13:19, 11 October 2012

Phase1 CAGE Peaks

	Short description
Mm9::chr13:49063373..49063398,-	p2@Fam120a
Mm9::chr13:49063403..49063437,-	p1@Fam120a
Mm9::chr6:119338689..119338757,-	p2@Adipor2

Enriched pathways on this co-expression clusterSummary: Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons. Analyst: Emmanuel Dimont link to source dataset data

GO ID	GO name	FDR corrected p-value
GO:0042562	hormone binding	0.00657426176518929
GO:0009755	hormone-mediated signaling	0.00657426176518929
GO:0009725	response to hormone stimulus	0.0082178272064866
GO:0019395	fatty acid oxidation	0.0082178272064866
GO:0046982	protein heterodimerization activity	0.0197227852955679
GO:0006631	fatty acid metabolic process	0.0388977154440366
GO:0042802	identical protein binding	0.0388977154440366
GO:0046983	protein dimerization activity	0.0388977154440366
GO:0032787	monocarboxylic acid metabolic process	0.0388977154440366
GO:0009719	response to endogenous stimulus	0.041089136032433

Relative expression of the co-expression cluster over median Analyst:

Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji links to source dataset cell_data uberon_data disease_data

Cell Type
Ontology term	p-value	n

Uber Anatomy
Ontology term	p-value	n

Disease
Ontology term	p-value	n

TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon link to source data Novel motifs data Jaspar motifs data

Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

@@ Line 1: / Line 1: @@
 {{MCL_coexpression_mm9
 |coexpression_dpi_cluster_scores_mean=-0.153882201138088,0.66498136375992,0.746690288681293,0.635591537454067,0.716420520653294,0.567209959079195,0.480933529832462,0.0377456796705733,0.313337036876502,0.343301174086155,0.102489779619458,0.122370294422538,0.0232653708687581,-0.0130649424793183,0.0966502358480015,-0.0540732447897097,0.0367771318982057,-0.14044140689085,-0.113098493450923,-0.155202575565727,-0.0519020878459591,0.0015207973467538,-0.190603030184664,0.353467971449619,0.343647757567715,0.659762521984521,0.634077023872162,0.519734264377827,0.382183137304226,0.434530480317907,0.318095986382709,-0.0793815305311567,-0.0521238631794211,-0.094836272829596,0.170661668724054,0.125044197658435,0.174371463462743,0.0767214274097529,-0.092634392135547,-0.0816362009970293,9.53547931123455e-05,0.0310456813862467,-0.0251718236584993,-0.109231383770214,-0.018438002458662,-0.163324176416833,0.0732209957974068,0.0646077893995506,0.240949056991853,0.198426751369678,0.197541517478046,0.111919927197862,-0.166649898008097,0.0365151791839505,-0.00469562757477493,0.111932852141986,0.0543184358142223,0.135606999951572,-0.37105450902975,-0.400555980487639,-0.421888217605372,0.0473831353764426,0.157884109228784,0.137602339202032,0.128822257221797,0.126434939450439,0.114221125824835,0.0790334557316809,-0.219158045760094,-0.283037932660183,-0.285978179640483,-0.281480671801286,-0.221077355930366,-0.350183994128842,-0.368980594904143,-0.43811417791252,-0.167223749888623,-0.21301724214192,-0.158702787252249,-0.346146528461107,-0.38899902691784,-0.472518868658289,-0.28769028252877,-0.271552069657132,-0.156189044761412,-0.244043368702859,-0.214306621398047,-0.216471338006867,-0.0753681358995877,-0.102119999432356,-0.0393502031697569,0.0171958181322044,0.209923018565036,0.294092466663488,0.3553970953576,0.342934018303164,0.15077273703418,0.063543655862219,-0.0989034994498031,-0.106379643720639,-0.179575252890362,-0.242449103878144,-0.0635015060665013,0.167314407598571,-0.192490501924049,-0.139628722292939,-0.0824019180663637,0.240830016972891,-0.163321682930747,0.128622682628894,-0.0149027143085466,0.0385878054253849,0.0936982088557022,0.0422189229021389,0.0720864730257202,0.161316689439679,0.283499634825256,0.195226731981781,0.154275395823118,0.0828874459146296,0.106081032889661,-0.0487363896416483,0.30550386048018,-0.147437422452565,-0.138389263308181,0.421080946356263,-0.10872624168014,-0.336839557810143,-0.154191249351011,-0.223737309887325,-0.1484383804132,-0.377434987128658,-0.162114296156825,-0.072133478571878,-0.118143500367398,-0.154426716403908,-0.0707727449650523,0.0742073555055395,-0.0840314787712437,0.00492987871863104,-0.299551776161046,-0.266420867685676,-0.239211522900562,-0.193490133079507,-0.115261617133501,-0.114676338927957,-0.109050975548733,0.0220183272078784,-0.277623430889342,-0.27004394720251,-0.219853957781732,-0.14842698589961,-0.13647935909425,0.0682721538437203,0.00542046367685167,-0.185891183718563,-0.364944139300021,-0.270318454127956,-0.127517657712567,-0.0827205984445605,-0.154520441202164,-0.117783040704795,-0.0911521579258509,-0.104539981141527,-0.114910878801418,-0.0971344517032034,0.00770727984657263,-0.0352138014860709,-0.0126952950371008,-0.0573636193647827,0.100311230464014,0.0632304248439319,0.0628628670141446,0.0423930856679422,-0.186094511702065,-0.252064255556449,0.558045168352167,0.426859677980107,-0.199367761167076,-0.123292825915617,0.152914754516923,0.219010295970511,0.218333349311739,0.228935751903379,0.465741618440375,0.279840845922273,0.268841546754273,0.254457989434521,0.255775671929591,0.425198258737332,0.438056072392939,0.479634714861244,-0.141933117295072,-0.105759117236165,-0.0168374033430287,-0.0659789676087319,-0.0579351399090768,0.0230127522626293,0.0904308938595271,0.103446198509148,0.146180171865375,0.122016262632442,0.312906481114382,0.108957933010344,0.149512790195019,0.166152804583704,0.147427561248608,0.209586775544375,0.10772727005762,0.174475701231413,0.196202206026332,0.17328314903389,0.885168519188222,0.292712141920655,0.240215913914284,0.292525381181938,0.246917008219951,0.303951773360854,0.0570070093949614,-0.253773461759646,-0.127681347177023,-0.132784950277228,-0.106217647995174,-0.0653126256375184,-0.0015544695304995,0.186084095291155,-0.0369335809966144,-0.0201806972712563,0.0533709554089784,0.0228421550216351,0.0629366461390627,0.066043155608308,-0.0617457573374839,-0.0906957044953021,0.279521634853476,0.199873949907221,-0.231231508307682,-0.207665463039529,0.0239511704223703,0.16537335471435,-0.11297648408496,-0.0539842343899922,-0.0495586368711927,-0.106032688783067,-0.0878977776261959,-0.0271819532125696,-0.00496968938317998,-0.0525088384233191,-0.0727747703254503,-0.0429377278300721,0.126669904039911,-0.0504978919276633,-0.029586189038482,0.0541759827908599,0.22682190843315,-0.0874513817734173,-0.0513865207759507,0.0648875024362261,0.066684280227769,0.144165613649322,0.161386834548746,0.0981884453793673,0.0400007398153061,0.130257066421677,0.106427283324391,0.225374674938013,-0.00646960141896097,-0.22665281960342,-0.151647111941218,-0.10509194794773,-0.0471895869761578,-0.0159686591840975,-0.0593847954176605,-0.0656508651208733,0.350602685399845,0.287518890583358,0.106876141614582,0.0477410133761738,0.0586406404717984,0.117491875353006,0.114700033270042,0.178229023067501,0.358316678637913,-0.189655574881753,0.072792427143861,-0.100428262863002,-0.0303641859827172,-0.00874695685230813,0.0833253382291025,0.122938136069178,-0.00103542567858106,-0.0248741313710184,0.0122180908513517,0.28180374460672,-0.142896611319456,0.0288941245128595,0.0593979589913832,0.0899623782641617,0.145504845645233,0.186588130042538,0.256046986136456,0.304886653216424,0.470076465551269,0.0630983643380733,-0.416933528286292,-0.111029511444716,-0.182374213335581,-0.0511142793927091,-0.0931476110956886,-0.0760572091651917,-0.0676238358431929,-0.0132215526257516,-0.139716358564124,-0.388324961423758,-0.236236996465097,0.0201506584440051,-0.0400046252878681,-0.0680796812690688,-0.0283547646104959,0.0294700689622932,0.0269037210448601,0.00672094627150303,-0.0128173961368119,-0.0868127358003678,-0.00532280714215924,-0.020849706712774,0.0293972871199886,0.00344771177982314,0.0248026238123599,0.171688639709935,-0.0951953126280371,-0.161564147904331,-0.0538069604809701,0.136227437086282,0.326653664721518,0.182787982174457,0.190981404050026,0.131529040824094,-0.063758117951536,-0.183028692508371,-0.144582828815971,-0.151283742949287,-0.259788288844276,-0.194444663091269,-0.273191036968295,-0.269735904401552,-0.242019614715604,-0.328524867310295,-0.262607269726681,-0.226461256375533,-0.17791068131479,-0.00362453490644933,-0.0438431074372693,0.0351017146714469,-0.00942750040976497,-0.0168882369866721,-0.000806078128144274,0.0348297474913115,0.0327172531559176,0.00474081051591059,0.00589554951786134,0.0357286334634012,0.0376780171816544,0.0280000252229088,0.0602246458231224,0.0714866913634563,0.0152184077390104,-0.0586920032245387,-0.0811300122542942,-0.0584476976087903,-0.0439887115790272,-0.0284930231480141,-0.000786423629155633,-0.0066046884551887,0.0187338351414472,-0.0881985112061185,-0.0125083836668823,-0.058717889889115,0.071352608185018,0.0647236831670455,-0.0493493933649694,0.0165904554907238,0.0561595075905442,0.0034783067170844,0.0722801961398435,0.0150685130498181,-0.0282384855180232,0.0405863229530909,0.0148425158148341
+|coexpression_dpi_cluster_scores_median=-0.184128596952795,0.773477547984453,0.836266888312698,0.674408139529524,0.778379211133953,0.677398136831588,0.518672647697777,0.066408708914476,0.323443683905227,0.466685686353181,0.0623362829219332,0.12196483075956,0.0464699319174711,-0.0692827680712813,0.101683531608466,-0.0748253291166274,0.0451692386867855,-0.152550036806388,-0.125532674048618,-0.157959125795465,-0.0704408818388447,0.0336776966815,-0.257796857453186,0.318496018216958,0.25750891395811,0.74805771444142,0.754314955394523,0.614803013006088,0.445770544916433,0.494316800296937,0.40523277219869,-0.0831214609334561,-0.0208774855061666,-0.0989328225544164,0.120156105840385,0.12775639283638,0.164755121529968,-0.0811362837991754,-0.225329639229742,-0.261935668411406,-0.256172555919425,-0.229194185886401,-0.227745276477991,0.0154263117269691,0.0896181061174439,-0.0191079410406851,0.0595929390276135,-0.00404479316881701,0.132437780559009,0.149759071211536,0.200241002253287,0.142926493492846,-0.202862614003512,0.0115973171652586,-0.00768766648564378,0.201580080748572,0.201529118185643,0.157389755285132,-0.494870008481409,-0.335005452178468,-0.56649594864832,0.095797622705428,0.199676667422549,0.13844375217631,0.139847557082799,0.147221577608621,0.0884006606609851,0.0735890624623339,-0.246201514715953,-0.311624416485058,-0.270368210342137,-0.279644774777682,-0.301541065833925,-0.36949498922413,-0.418519338728831,-0.392625346177414,-0.169982517599152,-0.247614647545424,-0.224967750959751,-0.46964119405817,-0.512409356340144,-0.619752047694956,-0.289125254582558,-0.285879807268469,-0.153899491889925,-0.29662074806596,-0.273772495582072,-0.280853673094532,-0.0807750193486001,-0.12626563681614,-0.0632837882601593,-0.0141748434994848,0.198928571584962,0.264394457451964,0.331396280333141,0.320017520593229,0.188810139917426,0.140386347930905,-0.131189965187191,-0.0882932455126777,-0.265210468529324,-0.254170906085278,-0.115430586891519,0.0955020400860731,-0.194786807070854,-0.14919662191479,-0.0382767144121967,0.286990864425792,-0.223144362233474,0.17168872814793,-0.034192958969341,0.058027129042163,0.0960172381357647,0.0820122752763686,0.0571085358109094,0.159690873449799,0.23452173371381,0.186136919697058,0.105131320240468,0.0564604272279181,0.0908544140390251,0.00847535521247744,0.260944140159539,-0.167270282073256,-0.137707776752987,0.377924480525068,-0.238670769134335,-0.372673154155479,-0.246999936589164,-0.187654158854413,-0.159349090094942,-0.469094428660336,-0.095132871513292,-0.0567312784829528,-0.129052468054594,-0.159826582913536,-0.0584988497925794,0.0719654468993427,-0.142761691836047,0.0690649323431081,-0.309637651849793,-0.300795977239246,-0.232353805459064,-0.245123836582972,-0.111654020857928,-0.161826254897688,-0.119667868041774,0.0320243804964733,-0.26181655809762,-0.3112513418148,-0.239518312437667,-0.0893662777959487,-0.0600841242185379,0.150844038210066,0.042121011121848,-0.200479667249594,-0.279072444953231,-0.25311402991946,-0.151310924123393,-0.0748931685719205,-0.140792817652617,-0.114037532767064,-0.0516211857455875,-0.104424223490768,-0.105377837771133,-0.0998864978633243,0.0292674409491096,-0.0567724396667735,-0.00958150032804972,-0.0675457209351711,0.0997897881000875,0.0941416327406293,0.0446081146833506,0.0308122386688063,-0.161559749022518,-0.304951439932148,0.59923116502832,0.374502380255678,-0.192135690486796,-0.114396518347939,0.13396077097324,0.211011738333906,0.210052247062834,0.239006942968457,0.487203555595934,0.260087636358806,0.302099227855777,0.26550916428784,0.294517368692181,0.375359862158011,0.502294976532217,0.530066218136268,-0.147595012268917,-0.0861233463880122,-0.0444506212438207,-0.0768883961454985,-0.0783610948736528,0.0373226238610742,0.0999839303868781,0.0830236341902826,0.139212221506957,0.126334678536354,0.333718095707814,0.0861378926241763,0.195669113025855,0.168333241631097,0.0948853533783589,0.187821912457913,0.112465838146748,0.14240346900001,0.237866277855027,0.122943234042662,0.924165535809047,0.337175251797026,0.141334791505355,0.322038641637944,0.26183002218014,0.359811510810082,0.0639814406618047,-0.279797787420182,-0.106145170966657,-0.110391225479396,-0.110256507942277,-0.112123342111031,-0.0120835276639597,0.168436597518685,-0.0435151868065602,-0.0414878445524498,0.0365366930219122,-0.0132176451577342,0.0483627502670043,0.039522976300574,-0.104337151430164,-0.122775692839761,0.331259349713546,0.215876723043722,-0.224299806922614,-0.210667139763407,0.0955333691406268,0.170725952334036,-0.0843500731575675,-0.0648523915945249,-0.0649648984634501,-0.0642875047873233,-0.13108102368317,-0.0648654231887249,-0.00414227020103364,-0.0362165207384355,-0.0409497760947735,-0.0453712114792861,0.147247557532048,-0.0496853475229526,0.00352610777609597,0.0840690527291901,0.280426303227668,-0.074987486574932,-0.0627709426906637,0.053589559300135,0.0941334334126882,0.132906056746564,0.19401604011759,0.0930610194446111,0.103485927634114,0.128062819016652,0.0694040823936135,0.26471993324149,0.0645419000000977,-0.219539844518075,-0.159746092609518,-0.0825786665448154,-0.0285487397429585,-0.0261863287013617,-0.0545615269866737,-0.0860810060831771,0.291386581584159,0.266103895745252,0.0569720695732148,0.0154812847440196,0.0588263419691852,0.147724681879857,0.103333810133827,0.177079369572267,0.411023905086938,-0.173849481794938,0.0686260047373439,-0.058815041004421,-0.0344612560689819,-0.0226876156863305,0.0818482806638581,0.160491142413653,-0.0993573179496292,-0.0774749239942523,-0.0627858795471219,0.218337777083764,-0.10823616613621,0.035029252121463,0.0696001133855795,0.0549322510601615,0.128794607089049,0.209153073427388,0.237097750256184,0.346129097506978,0.463568865861692,0.0468303545251527,-0.363322439102456,-0.121185452371398,-0.171153112957175,-0.0553656577388744,-0.108304224899973,-0.0749883716239956,-0.0749416517531687,-0.00949613160034057,-0.177682636843967,-0.453062516128974,-0.318482050573473,-0.0042617580896529,-0.0302168151105779,-0.105250698844734,-0.0259786983523784,0.0401719373996576,0.027152844763431,-0.0264186714407784,-0.00987916308080683,-0.0632152529761112,0.000694994087691692,-0.0335371821813395,0.0170174281891204,-0.00514170937307568,0.0504054427702052,0.165995950747328,-0.0130303776371192,-0.0749463743615217,0.0842717844271552,0.129185423945532,0.283580284237622,0.235358130236827,0.206989430559397,0.124302981843604,-0.0562432033179827,-0.172517646373733,-0.125014230808819,-0.138490425136353,-0.175646479719406,-0.220989479298414,-0.289201899301604,-0.215717640514833,-0.234771659080231,-0.239759133636098,-0.263568073832876,-0.263151263327006,-0.158634840144113,0.0327069956322477,-0.0277371098037147,0.0507417459018655,-0.0173993941359316,-0.0187905638205124,-0.00283581313789472,0.0370370331330903,0.0184482158861379,0.00518785582505377,0.000617387745097675,0.033413022243,0.0339136074453765,0.0333904742881452,0.0576618333646792,0.0821646573759989,-0.0107988114887909,-0.0566019951477605,-0.0948885574822618,-0.0933006629739896,-0.0341330600656791,-0.00832518149975403,-0.0182302377950574,0.0161409427996699,0.0120508270160273,-0.0789966768954131,-0.0131128387218782,-0.0765083235585231,0.07083315449726,0.0663118003299277,-0.0800702712516781,-0.0176675186828688,0.0578499380095392,0.0306930555564626,0.06038166562669,0.00631118123402929,0.011563032419053,0.0284936565256602,-0.00437777448535193
 |gostat_on_MCL_coexpression=GO:0042562;hormone binding;0.00657426176518929;68465!GO:0009755;hormone-mediated signaling;0.00657426176518929;68465!GO:0009725;response to hormone stimulus;0.0082178272064866;68465!GO:0019395;fatty acid oxidation;0.0082178272064866;68465!GO:0046982;protein heterodimerization activity;0.0197227852955679;68465!GO:0006631;fatty acid metabolic process;0.0388977154440366;68465!GO:0042802;identical protein binding;0.0388977154440366;68465!GO:0046983;protein dimerization activity;0.0388977154440366;68465!GO:0032787;monocarboxylic acid metabolic process;0.0388977154440366;68465!GO:0009719;response to endogenous stimulus;0.041089136032433;68465!
 }}

Personal tools

MCL coexpression mm9:2853: Difference between revisions - resource_browser

Search

Human

Mouse

Rat

Dog

Chicken

Macaque

Cross species

Other

Tools

MCL coexpression mm9:2853: Difference between revisions

From FANTOM5_SSTAR

Revision as of 13:19, 11 October 2012

Phase1 CAGE Peaks

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0