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Coexpression cluster:C43: Difference between revisions

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|tf_chipseq_enrich=GATA3#2625;27:1.74262071479754:0.0042133097766613:0.020056237910881
|tf_chipseq_enrich=GATA3#2625;27:1.74262071479754:0.0042133097766613:0.020056237910881
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}}
}}

Revision as of 13:12, 26 November 2012


Full id: C43_ductus_seminal_duodenum_temporal_gall_prostate_bladder



Phase1 CAGE Peaks

Hg19::chr10:114094924..114094935,-p@chr10:114094924..114094935
-
Hg19::chr10:119301928..119301955,+p7@EMX2
Hg19::chr10:119302352..119302362,+p9@EMX2
Hg19::chr10:119799753..119799794,-p10@RAB11FIP2
Hg19::chr10:134232503..134232535,+p1@ENST00000428814
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Hg19::chr10:62493155..62493178,-p21@ANK3
Hg19::chr10:62493181..62493193,-p32@ANK3
Hg19::chr10:98351232..98351244,+p@chr10:98351232..98351244
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Hg19::chr11:1013099..1013106,-p@chr11:1013099..1013106
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Hg19::chr11:1013272..1013280,-p@chr11:1013272..1013280
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Hg19::chr11:1013442..1013453,-p@chr11:1013442..1013453
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Hg19::chr11:1016166..1016191,-p14@MUC6
Hg19::chr11:1016201..1016208,-p22@MUC6
Hg19::chr11:1016211..1016226,-p17@MUC6
Hg19::chr11:1016227..1016230,-p28@MUC6
Hg19::chr11:1016244..1016253,-p18@MUC6
Hg19::chr11:1016258..1016273,-p9@MUC6
Hg19::chr11:1016279..1016282,-p31@MUC6
Hg19::chr11:1016362..1016365,-p29@MUC6
Hg19::chr11:1016401..1016406,-p26@MUC6
Hg19::chr11:1016415..1016419,-p30@MUC6
Hg19::chr11:1016420..1016427,-p21@MUC6
Hg19::chr11:1016455..1016460,-p24@MUC6
Hg19::chr11:1016476..1016483,-p23@MUC6
Hg19::chr11:1016486..1016504,-p15@MUC6
Hg19::chr11:1016543..1016550,-p25@MUC6
Hg19::chr11:1016579..1016592,-p16@MUC6
Hg19::chr11:1016624..1016641,-p13@MUC6
Hg19::chr11:1016643..1016652,+p@chr11:1016643..1016652
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Hg19::chr11:1016670..1016714,-p7@MUC6
Hg19::chr11:1016733..1016759,-p10@MUC6
Hg19::chr11:1016808..1016846,+p@chr11:1016808..1016846
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Hg19::chr11:1016848..1016859,-p2@MUC6
Hg19::chr11:1016867..1016885,-p3@MUC6
Hg19::chr11:1016951..1016964,+p@chr11:1016951..1016964
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Hg19::chr11:1017057..1017071,-p4@MUC6
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Hg19::chr11:1017627..1017639,+p@chr11:1017627..1017639
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Hg19::chr11:1017652..1017678,+p@chr11:1017652..1017678
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Hg19::chr11:30182693..30182698,-p@chr11:30182693..30182698
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Hg19::chr11:34592440..34592452,+p1@ENST00000527135
Hg19::chr11:34643148..34643157,+p16@EHF
Hg19::chr11:34645764..34645775,+p9@EHF
Hg19::chr11:34657264..34657269,+p@chr11:34657264..34657269
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Hg19::chr11:34661390..34661395,-p@chr11:34661390..34661395
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Hg19::chr11:34841932..34841939,+p@chr11:34841932..34841939
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Hg19::chr11:3837418..3837454,+p3@PGAP2
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Hg19::chr11:69950851..69950887,+p@chr11:69950851..69950887
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Hg19::chr11:69963227..69963231,+p@chr11:69963227..69963231
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Hg19::chr11:7627035..7627047,+p18@PPFIBP2
Hg19::chr11:92922903..92922918,+p@chr11:92922903..92922918
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Hg19::chr12:115122224..115122233,-p12@TBX3
Hg19::chr12:115122262..115122271,-p7@TBX3
Hg19::chr12:115122297..115122302,-p15@TBX3
Hg19::chr12:115122303..115122314,-p6@TBX3
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Hg19::chr12:126515178..126515204,+p@chr12:126515178..126515204
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Hg19::chr12:18414412..18414427,+p2@PIK3C2G
Hg19::chr12:18414446..18414457,+p1@PIK3C2G
Hg19::chr12:50344516..50344532,+p1@AQP2
Hg19::chr12:50350567..50350576,+p3@AQP2
Hg19::chr12:50350704..50350713,+p2@AQP2
Hg19::chr12:50351023..50351037,+p@chr12:50351023..50351037
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Hg19::chr12:52426680..52426686,-p@chr12:52426680..52426686
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Hg19::chr13:114542996..114543009,-p@chr13:114542996..114543009
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Hg19::chr13:43629536..43629554,+p@chr13:43629536..43629554
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Hg19::chr14:105935020..105935028,-p@chr14:105935020..105935028
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Hg19::chr14:21467316..21467327,-p1@ENST00000557335
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Hg19::chr15:45406385..45406401,-p2@DUOX2
Hg19::chr15:45406522..45406525,+p1@DUOXA2
Hg19::chr15:48393693..48393723,-p@chr15:48393693..48393723
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Hg19::chr15:58623617..58623628,-p8@ALDH1A2
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Hg19::chr15:91849948..91849962,+p@chr15:91849948..91849962
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Hg19::chr15:91849967..91849970,+p@chr15:91849967..91849970
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Hg19::chr15:98561014..98561023,-p@chr15:98561014..98561023
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Hg19::chr17:1648250..1648286,+p3@SERPINF2
Hg19::chr17:37366154..37366159,+p@chr17:37366154..37366159
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Hg19::chr17:37381998..37382009,-p6@STAC2
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Hg19::chr17:37382066..37382085,-p4@STAC2
Hg19::chr17:37382105..37382120,-p5@STAC2
Hg19::chr17:37382164..37382182,-p3@STAC2
Hg19::chr17:37824133..37824155,+p4@PNMT
Hg19::chr17:44928946..44928953,+p1@WNT9B
Hg19::chr17:49021974..49021982,-p1@ENST00000501718
Hg19::chr17:59474831..59474844,+p@chr17:59474831..59474844
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Hg19::chr17:59475349..59475360,+p@chr17:59475349..59475360
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Hg19::chr17:59475447..59475455,+p@chr17:59475447..59475455
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Hg19::chr17:59475472..59475493,+p@chr17:59475472..59475493
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Hg19::chr17:59475532..59475544,+p@chr17:59475532..59475544
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Hg19::chr17:59475590..59475608,+p@chr17:59475590..59475608
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Hg19::chr18:30353911..30353913,+p@chr18:30353911..30353913
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Hg19::chr18:9475687..9475698,+p6@RALBP1
Hg19::chr19:15703376..15703385,-p@chr19:15703376..15703385
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Hg19::chr19:15706318..15706336,+p@chr19:15706318..15706336
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Hg19::chr19:15726022..15726074,+p1@CYP4F8
Hg19::chr19:15728825..15728834,+p@chr19:15728825..15728834
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Hg19::chr19:15728853..15728859,+p@chr19:15728853..15728859
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Hg19::chr19:15728879..15728890,+p@chr19:15728879..15728890
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Hg19::chr19:15728999..15729014,+p@chr19:15728999..15729014
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Hg19::chr19:15729741..15729749,+p@chr19:15729741..15729749
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Hg19::chr19:15729846..15729851,+p@chr19:15729846..15729851
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Hg19::chr19:15729943..15729948,+p@chr19:15729943..15729948
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Hg19::chr19:15730000..15730004,+p@chr19:15730000..15730004
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Hg19::chr19:15730135..15730149,+p@chr19:15730135..15730149
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Hg19::chr19:15730666..15730675,+p@chr19:15730666..15730675
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Hg19::chr19:15731181..15731184,+p@chr19:15731181..15731184
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Hg19::chr19:15731989..15732000,+p@chr19:15731989..15732000
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Hg19::chr19:15732081..15732088,+p@chr19:15732081..15732088
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Hg19::chr19:15733036..15733039,+p@chr19:15733036..15733039
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Hg19::chr19:15733072..15733082,+p@chr19:15733072..15733082
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Hg19::chr19:15733200..15733213,+p@chr19:15733200..15733213
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Hg19::chr19:15733422..15733428,+p@chr19:15733422..15733428
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Hg19::chr19:15734133..15734157,+p@chr19:15734133..15734157
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Hg19::chr19:15736305..15736328,+p@chr19:15736305..15736328
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Hg19::chr19:15739153..15739175,+p@chr19:15739153..15739175
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Hg19::chr19:20265757..20265766,+p@chr19:20265757..20265766
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Hg19::chr19:38743779..38743782,-p@chr19:38743779..38743782
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Hg19::chr19:9820333..9820338,+p@chr19:9820333..9820338
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Hg19::chr1:151926100..151926113,-p@chr1:151926100..151926113
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Hg19::chr1:16553419..16553431,-p@chr1:16553419..16553431
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Hg19::chr1:20113572..20113583,-p11@TMCO4
Hg19::chr1:25179461..25179463,+p@chr1:25179461..25179463
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Hg19::chr1:26217127..26217131,+p@chr1:26217127..26217131
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Hg19::chr1:30482788..30482792,-p@chr1:30482788..30482792
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Hg19::chr20:40980960..40980970,-p@chr20:40980960..40980970
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Hg19::chr20:43767209..43767214,-p@chr20:43767209..43767214
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Hg19::chr20:43835380..43835384,+p2@SEMG1
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Hg19::chr20:43835666..43835686,+p1@SEMG1
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Hg19::chr20:43836059..43836079,+p@chr20:43836059..43836079
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Hg19::chr20:43838313..43838327,+p@chr20:43838313..43838327
+
Hg19::chr20:43838343..43838355,+p@chr20:43838343..43838355
+
Hg19::chr20:43850003..43850017,+p2@SEMG2
Hg19::chr20:43850348..43850365,+p@chr20:43850348..43850365
+
Hg19::chr20:43850370..43850384,+p@chr20:43850370..43850384
+
Hg19::chr20:43850403..43850416,+p@chr20:43850403..43850416
+
Hg19::chr20:43850418..43850438,+p@chr20:43850418..43850438
+
Hg19::chr20:43850436..43850444,-p@chr20:43850436..43850444
-
Hg19::chr20:43850450..43850493,+p@chr20:43850450..43850493
+
Hg19::chr20:43850505..43850516,-p@chr20:43850505..43850516
-
Hg19::chr20:43850531..43850538,+p@chr20:43850531..43850538
+
Hg19::chr20:43850545..43850564,+p@chr20:43850545..43850564
+
Hg19::chr20:43850565..43850590,+p@chr20:43850565..43850590
+
Hg19::chr20:43850628..43850633,+p@chr20:43850628..43850633
+
Hg19::chr20:43850640..43850649,+p@chr20:43850640..43850649
+
Hg19::chr20:43850651..43850662,+p@chr20:43850651..43850662
+
Hg19::chr20:43850664..43850675,+p@chr20:43850664..43850675
+
Hg19::chr20:43850711..43850740,+p@chr20:43850711..43850740
+
Hg19::chr20:43850750..43850755,+p@chr20:43850750..43850755
+
Hg19::chr20:43850764..43850812,+p@chr20:43850764..43850812
+
Hg19::chr20:43850822..43850832,+p@chr20:43850822..43850832
+
Hg19::chr20:43850844..43850864,+p@chr20:43850844..43850864
+
Hg19::chr20:43850865..43850873,+p@chr20:43850865..43850873
+
Hg19::chr20:43850927..43850931,+p@chr20:43850927..43850931
+
Hg19::chr20:43850941..43850991,+p@chr20:43850941..43850991
+
Hg19::chr20:43850995..43851023,+p@chr20:43850995..43851023
+
Hg19::chr20:43851080..43851084,+p@chr20:43851080..43851084
+
Hg19::chr20:43851095..43851098,+p@chr20:43851095..43851098
+
Hg19::chr20:43851110..43851138,+p@chr20:43851110..43851138
+
Hg19::chr20:43851142..43851164,+p@chr20:43851142..43851164
+
Hg19::chr20:43851172..43851181,+p@chr20:43851172..43851181
+
Hg19::chr20:43851184..43851194,+p@chr20:43851184..43851194
+
Hg19::chr20:43851312..43851315,+p@chr20:43851312..43851315
+
Hg19::chr20:43851326..43851348,+p@chr20:43851326..43851348
+
Hg19::chr20:43851353..43851363,+p@chr20:43851353..43851363
+
Hg19::chr20:43851377..43851400,+p@chr20:43851377..43851400
+
Hg19::chr20:43851422..43851430,+p@chr20:43851422..43851430
+
Hg19::chr20:43851436..43851450,+p@chr20:43851436..43851450
+
Hg19::chr20:43851454..43851459,+p@chr20:43851454..43851459
+
Hg19::chr20:43851492..43851518,+p@chr20:43851492..43851518
+
Hg19::chr20:43851532..43851542,+p@chr20:43851532..43851542
+
Hg19::chr20:43851568..43851570,+p@chr20:43851568..43851570
+
Hg19::chr20:43851679..43851707,+p@chr20:43851679..43851707
+
Hg19::chr20:43851712..43851727,+p@chr20:43851712..43851727
+
Hg19::chr20:43851737..43851742,+p@chr20:43851737..43851742
+
Hg19::chr20:43851747..43851752,+p@chr20:43851747..43851752
+
Hg19::chr20:43851758..43851791,+p@chr20:43851758..43851791
+
Hg19::chr20:43851831..43851874,+p@chr20:43851831..43851874
+
Hg19::chr20:43851878..43851883,+p@chr20:43851878..43851883
+
Hg19::chr20:43851914..43851932,+p@chr20:43851914..43851932
+
Hg19::chr20:43851935..43851976,+p@chr20:43851935..43851976
+
Hg19::chr20:43851992..43851993,+p@chr20:43851992..43851993
+
Hg19::chr20:43851994..43852003,+p@chr20:43851994..43852003
+
Hg19::chr20:43852004..43852005,+p@chr20:43852004..43852005
+
Hg19::chr20:43852924..43852944,+p@chr20:43852924..43852944
+
Hg19::chr20:43852949..43852953,+p@chr20:43852949..43852953
+
Hg19::chr20:43852958..43852972,+p@chr20:43852958..43852972
+
Hg19::chr20:43853005..43853012,+p@chr20:43853005..43853012
+
Hg19::chr20:43853036..43853043,+p@chr20:43853036..43853043
+
Hg19::chr20:43853046..43853053,+p@chr20:43853046..43853053
+
Hg19::chr20:43881726..43881759,-p@chr20:43881726..43881759
-
Hg19::chr20:43881765..43881790,-p@chr20:43881765..43881790
-
Hg19::chr20:43882241..43882287,-p@chr20:43882241..43882287
-
Hg19::chr20:43882308..43882340,-p@chr20:43882308..43882340
-
Hg19::chr20:43882345..43882381,-p@chr20:43882345..43882381
-
Hg19::chr21:44936834..44936852,-p@chr21:44936834..44936852
-
Hg19::chr22:24990746..24990764,+p5@GGT1
p5@GGT2
Hg19::chr22:29702746..29702758,+p7@GAS2L1
Hg19::chr22:31739411..31739446,-p5@PATZ1
Hg19::chr22:42896601..42896617,+p1@SERHL
Hg19::chr2:173092815..173092822,+p@chr2:173092815..173092822
+
Hg19::chr2:177036652..177036662,+p@chr2:177036652..177036662
+
Hg19::chr2:18887940..18887947,+p@chr2:18887940..18887947
+
Hg19::chr2:219942197..219942226,+p@chr2:219942197..219942226
+
Hg19::chr2:223648293..223648295,+p@chr2:223648293..223648295
+
Hg19::chr2:224621254..224621326,-p@chr2:224621254..224621326
-
Hg19::chr2:74143722..74143740,+p@chr2:74143722..74143740
+
Hg19::chr2:87985242..87985251,-p@chr2:87985242..87985251
-
Hg19::chr2:96812775..96812786,-p1@ENST00000449242
Hg19::chr3:133663994..133664017,-p@chr3:133663994..133664017
-
Hg19::chr3:133748913..133748927,-p2@SLCO2A1
Hg19::chr3:133748943..133748955,-p3@SLCO2A1
Hg19::chr3:155455667..155455700,-p@chr3:155455667..155455700
-
Hg19::chr3:193555228..193555250,-p@chr3:193555228..193555250
-
Hg19::chr3:193555252..193555265,-p@chr3:193555252..193555265
-
Hg19::chr3:46480817..46480825,-p@chr3:46480817..46480825
-
Hg19::chr3:46482934..46482982,-p@chr3:46482934..46482982
-
Hg19::chr3:46501265..46501314,-p@chr3:46501265..46501314
-
Hg19::chr4:10008097..10008109,+p1@ENST00000503493
Hg19::chr4:25656780..25656793,+p2@SLC34A2
Hg19::chr4:25656920..25656927,+p8@SLC34A2
Hg19::chr4:42942084..42942100,+p@chr4:42942084..42942100
+
Hg19::chr4:89079817..89079832,-p7@ABCG2
Hg19::chr4:9446156..9446170,+p2@DEFB131
Hg19::chr4:96012601..96012612,+p17@BMPR1B
Hg19::chr4:96012614..96012632,+p14@BMPR1B
Hg19::chr5:131335139..131335149,-p10@ACSL6
Hg19::chr5:131339117..131339121,-p@chr5:131339117..131339121
-
Hg19::chr5:134260998..134261018,-p@chr5:134260998..134261018
-
Hg19::chr5:148960931..148961073,+p1@ARHGEF37
Hg19::chr5:179511281..179511283,+p@chr5:179511281..179511283
+
Hg19::chr6:107230334..107230374,-p@chr6:107230334..107230374
-
Hg19::chr6:70856430..70856440,+p@chr6:70856430..70856440
+
Hg19::chr7:107435037..107435050,-p2@SLC26A3
Hg19::chr7:128550736..128550768,-p1@KCP
Hg19::chr7:128581316..128581333,+p@chr7:128581316..128581333
+
Hg19::chr7:142832277..142832283,+p@chr7:142832277..142832283
+
Hg19::chr7:142832310..142832315,+p@chr7:142832310..142832315
+
Hg19::chr7:142832323..142832332,+p@chr7:142832323..142832332
+
Hg19::chr7:142832334..142832348,+p@chr7:142832334..142832348
+
Hg19::chr7:142836165..142836175,+p@chr7:142836165..142836175
+
Hg19::chr7:142836184..142836203,+p@chr7:142836184..142836203
+
Hg19::chr7:142836205..142836214,+p@chr7:142836205..142836214
+
Hg19::chr7:142836217..142836230,+p@chr7:142836217..142836230
+
Hg19::chr7:142836239..142836244,+p@chr7:142836239..142836244
+
Hg19::chr7:25702558..25702582,-p2@ENST00000423689
Hg19::chr7:25702584..25702625,-p1@ENST00000423689
Hg19::chr7:25702639..25702664,-p1@ENST00000446840
p1@uc003sxp.1
Hg19::chr7:25702669..25702678,-p4@ENST00000446840
p4@uc003sxp.1
Hg19::chr7:75544218..75544238,-p@chr7:75544218..75544238
-
Hg19::chr7:95224857..95224870,-p@chr7:95224857..95224870
-
Hg19::chr8:124749672..124749682,-p2@ANXA13
Hg19::chr8:22844948..22844964,+p17@RHOBTB2
Hg19::chr8:22844997..22845008,+p12@RHOBTB2
Hg19::chr8:22845010..22845020,+p18@RHOBTB2
Hg19::chr8:27947746..27947750,+p3@ELP3
Hg19::chr9:132258076..132258088,+p@chr9:132258076..132258088
+
Hg19::chr9:138479791..138479804,+p1@ENST00000434190
Hg19::chr9:138555154..138555159,+p1@LCN9
Hg19::chr9:4066471..4066476,+p@chr9:4066471..4066476
+
Hg19::chrX:106171274..106171287,+p3@CLDN2
Hg19::chrX:11284012..11284023,-p16@ARHGAP6
Hg19::chrX:118285087..118285098,-p@chrX:118285087..118285098
-
Hg19::chrX:152622610..152622615,+p@chrX:152622610..152622615
+
Hg19::chrX:4693334..4693349,-p@chrX:4693334..4693349
-
Hg19::chrX:56644819..56644825,+p1@ENST00000446028
Hg19::chrX:93855299..93855313,-p@chrX:93855299..93855313
-
Hg19::chrX:93855318..93855329,-p@chrX:93855318..93855329
-
Hg19::chrX:95646748..95646761,-p@chrX:95646748..95646761
-
Hg19::chrX:95646780..95646789,-p@chrX:95646780..95646789
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
2.53205911108454e-050.01602793417316516401Transmembrane transport of small molecules (Reactome):REACT_15518



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016324apical plasma membrane0.0227850847922863
GO:0005624membrane fraction0.0227850847922863
GO:0045177apical part of cell0.0227850847922863
GO:0003002regionalization0.0227850847922863
GO:0005100Rho GTPase activator activity0.038153331909274
GO:0007389pattern specification process0.038153331909274
GO:0046660female sex differentiation0.038153331909274
GO:0046545development of primary female sexual characteristics0.038153331909274
GO:0000267cell fraction0.038153331909274
GO:0048736appendage development0.038153331909274
GO:0060173limb development0.038153331909274
GO:0035107appendage morphogenesis0.038153331909274
GO:0035108limb morphogenesis0.038153331909274
GO:0030141secretory granule0.038153331909274
GO:0007588excretion0.0398367282860395
GO:0005550pheromone binding0.0398367282860395
GO:0032275luteinizing hormone secretion0.0398367282860395
GO:0004603phenylethanolamine N-methyltransferase activity0.0398367282860395
GO:0009952anterior/posterior pattern formation0.0465077853848852
GO:0051234establishment of localization0.0465077853848852
GO:0045137development of primary sexual characteristics0.0465077853848852
GO:0001550ovarian cumulus expansion0.0465077853848852
GO:0022605oogenesis stage0.0465077853848852
GO:0017160Ral GTPase binding0.0465077853848852
GO:0001547antral ovarian follicle growth0.0465077853848852
GO:0048165fused antrum stage, oogenesis0.0465077853848852
GO:0008393fatty acid (omega-1)-hydroxylase activity0.0465077853848852
GO:0030540female genitalia development0.0465077853848852
GO:0009651response to salt stress0.0465077853848852
GO:0048609reproductive process in a multicellular organism0.0465077853848852
GO:0032504multicellular organism reproduction0.0465077853848852
GO:0015103inorganic anion transmembrane transporter activity0.047749213512135
GO:0043089positive regulation of Cdc42 GTPase activity0.047749213512135
GO:0030277maintenance of gastrointestinal epithelium0.047749213512135
GO:0042335cuticle development0.047749213512135
GO:0045662negative regulation of myoblast differentiation0.047749213512135
GO:0035117embryonic arm morphogenesis0.047749213512135
GO:0016565general transcriptional repressor activity0.047749213512135
GO:0035140arm morphogenesis0.047749213512135
GO:0001758retinal dehydrogenase activity0.047749213512135
GO:0042910xenobiotic transporter activity0.047749213512135
GO:0016174NAD(P)H oxidase activity0.047749213512135
GO:0008559xenobiotic-transporting ATPase activity0.047749213512135
GO:0035005phosphatidylinositol-4-phosphate 3-kinase activity0.047749213512135
GO:0005549odorant binding0.047749213512135
GO:0051179localization0.0478004503973717
GO:0005886plasma membrane0.0478004503973717



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
male genital duct1.71e-663
internal male genitalia1.71e-663
seminal vesicle1.46e-501
seminal fluid secreting gland1.46e-501
vas deferens2.42e-501
spermatic cord2.42e-501
duct of male reproductive system3.11e-504
urinary bladder9.18e-262
lower urinary tract9.18e-262
male organism3.99e-2122
male reproductive system3.99e-2122
male reproductive organ4.28e-1911
sex gland1.44e-1712
male reproductive gland1.44e-1712
intermediate mesoderm8.96e-1728
cloaca3.93e-1514
anal region3.93e-1514
embryonic cloaca3.93e-1514
terminal part of digestive tract3.93e-1514
primitive urogenital sinus3.93e-1514
proctodeum3.93e-1514
genitourinary system3.36e-1415
duct1.55e-1119
hindgut1.91e-1119
urinary system structure2.24e-1047
renal system3.53e-1048
internal genitalia5.06e-0925
reproductive structure1.83e-0859
reproductive system1.83e-0859
mixed endoderm/mesoderm-derived structure7.40e-0829
adult organism8.86e-08114
testis1.49e-078
cavitated compound organ1.92e-0731
mesonephros7.48e-079
pronephros7.48e-079
nephrogenic cord7.48e-079
pronephric mesoderm7.48e-079
rostral part of nephrogenic cord7.48e-079
presumptive pronephric mesoderm7.48e-079


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
GATA3#2625271.742620714797540.00421330977666130.020056237910881



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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