FFCP PHASE1:Mm9::chr4:126429355..126429362,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=935|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:126429355..126429362,-|id=chr4:126429355..126429362,-|ontology_enrichment_celltype=CL:0000117!8.92e-10!23;CL:0000337!8.92e-10!23;CL:0002610!1.85e-07!3;CL:0002614!6.42e-07!3|ontology_enrichment_celltype_v019_2=CL:0002610,6.18e-11,3;CL:0002614,4.42e-10,3;CL:0000117,1.11e-07,23;CL:0000337,1.11e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.23e-31!75;UBERON:0001016!2.23e-31!75;UBERON:0000955!3.58e-29!50;UBERON:0006238!3.58e-29!50;UBERON:0001049!3.83e-29!52;UBERON:0005068!3.83e-29!52;UBERON:0006241!3.83e-29!52;UBERON:0007135!3.83e-29!52;UBERON:0001017!4.66e-29!73;UBERON:0005743!4.66e-29!73;UBERON:0002616!1.46e-27!49;UBERON:0000033!3.53e-23!63;UBERON:0002020!4.51e-22!34;UBERON:0004121!6.39e-22!102;UBERON:0000924!6.39e-22!102;UBERON:0006601!6.39e-22!102;UBERON:0002346!1.11e-20!71;UBERON:0003075!1.11e-20!71;UBERON:0007284!1.11e-20!71;UBERON:0003080!1.97e-18!40;UBERON:0002791!2.04e-17!29;UBERON:0003528!2.04e-17!29;UBERON:0001893!2.04e-17!29;UBERON:0002780!6.37e-17!39;UBERON:0001890!6.37e-17!39;UBERON:0006240!6.37e-17!39;UBERON:0003056!1.87e-15!49;UBERON:0007811!7.97e-15!86;UBERON:0002021!1.83e-14!10;UBERON:0000411!1.83e-14!10;UBERON:0001950!1.83e-14!10;UBERON:0000153!6.88e-13!94;UBERON:0002298!1.08e-12!6;UBERON:0000956!1.24e-12!21;UBERON:0001869!1.24e-12!21;UBERON:0000203!1.24e-12!21;UBERON:0002619!1.03e-11!17;UBERON:0003076!1.18e-11!12;UBERON:0003057!1.18e-11!12;UBERON:0000025!8.57e-10!114;UBERON:0004111!1.75e-09!122;UBERON:0002950!6.15e-09!4;UBERON:0001891!6.15e-09!4;UBERON:0009616!6.15e-09!4;UBERON:0002240!7.11e-08!6;UBERON:0005174!7.11e-08!6;UBERON:0001137!7.11e-08!6;UBERON:0004684!1.85e-07!3;UBERON:0002275!1.85e-07!3;UBERON:0002038!6.42e-07!3;UBERON:0002308!6.42e-07!3;UBERON:0009663!6.42e-07!3;UBERON:0009661!6.42e-07!3;UBERON:0006331!6.42e-07!3;UBERON:0000125!6.42e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.24e-29,54;UBERON:0001049,6.52e-25,52;UBERON:0005068,6.52e-25,52;UBERON:0006241,6.52e-25,52;UBERON:0007135,6.52e-25,52;UBERON:0001017,9.17e-25,73;UBERON:0001016,5.64e-24,75;UBERON:0000955,8.25e-23,47;UBERON:0006238,8.25e-23,47;UBERON:0002616,7.62e-21,46;UBERON:0002020,1.26e-19,34;UBERON:0002346,2.04e-19,64;UBERON:0003075,2.04e-19,64;UBERON:0007284,2.04e-19,64;UBERON:0003080,4.21e-19,40;UBERON:0003528,6.58e-18,29;UBERON:0002791,6.58e-18,29;UBERON:0001893,6.58e-18,29;UBERON:0004121,6.63e-18,95;UBERON:0000924,6.63e-18,95;UBERON:0006601,6.63e-18,95;UBERON:0002021,6.88e-18,10;UBERON:0000411,6.88e-18,10;UBERON:0001950,6.88e-18,10;UBERON:0002780,4.48e-17,39;UBERON:0001890,4.48e-17,39;UBERON:0006240,4.48e-17,39;UBERON:0010371,1.77e-16,73;UBERON:0003056,6.02e-15,49;UBERON:0002950,2.81e-13,4;UBERON:0001891,2.81e-13,4;UBERON:0009616,2.81e-13,4;UBERON:0010286,2.81e-13,4;UBERON:0002619,5.12e-13,17;UBERON:0000956,1.19e-12,21;UBERON:0001869,1.19e-12,21;UBERON:0000203,1.19e-12,21;UBERON:0010314,3.70e-12,92;UBERON:0004684,6.18e-11,3;UBERON:0002275,6.18e-11,3;UBERON:0002038,4.42e-10,3;UBERON:0009663,4.42e-10,3;UBERON:0009661,4.42e-10,3;UBERON:0000125,4.42e-10,3;UBERON:0002308,4.42e-10,3;UBERON:0004111,4.77e-09,122;UBERON:0000025,5.97e-09,114;UBERON:0001896,1.35e-07,2;UBERON:0002298,1.35e-07,2;UBERON:0005290,1.35e-07,2;UBERON:0010096,1.35e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,3.14216082844184,1.10434270475807,0,0,0,9.91042928994498,10.214987046815,10.9060638611933,0,0,0,8.65467296904281,3.37657566019008,3.51435969886663,0.294628585473668,0.854230084794618,0,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,11.833460512981,5.94750783664214,0.125654352112864,2.60736480288415,2.81287003063364,9.97382613885888,7.78758062725237,0,0,0,0,0,0,0,0,0,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4450837762594,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,9.31193421929193,8.32202974804643,0,0,0,0,0,0,0,0,0,0,0,7.71171159412337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,10.9400928186201,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50471631210609,4.51801474093653,2.76195141904306,5.15605962095457,3.43706364687375,1.37016503954128,0.755393897389701,2.02506750069542,3.15224842256954,1.35942722695261,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0|short_description=p@chr4:126429355..126429362,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=935 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:126429355..126429362,- | |||
|id=chr4:126429355..126429362,- | |||
|ontology_enrichment_celltype=CL:0000117!8.92e-10!23;CL:0000337!8.92e-10!23;CL:0002610!1.85e-07!3;CL:0002614!6.42e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,6.18e-11,3;CL:0002614,4.42e-10,3;CL:0000117,1.11e-07,23;CL:0000337,1.11e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.23e-31!75;UBERON:0001016!2.23e-31!75;UBERON:0000955!3.58e-29!50;UBERON:0006238!3.58e-29!50;UBERON:0001049!3.83e-29!52;UBERON:0005068!3.83e-29!52;UBERON:0006241!3.83e-29!52;UBERON:0007135!3.83e-29!52;UBERON:0001017!4.66e-29!73;UBERON:0005743!4.66e-29!73;UBERON:0002616!1.46e-27!49;UBERON:0000033!3.53e-23!63;UBERON:0002020!4.51e-22!34;UBERON:0004121!6.39e-22!102;UBERON:0000924!6.39e-22!102;UBERON:0006601!6.39e-22!102;UBERON:0002346!1.11e-20!71;UBERON:0003075!1.11e-20!71;UBERON:0007284!1.11e-20!71;UBERON:0003080!1.97e-18!40;UBERON:0002791!2.04e-17!29;UBERON:0003528!2.04e-17!29;UBERON:0001893!2.04e-17!29;UBERON:0002780!6.37e-17!39;UBERON:0001890!6.37e-17!39;UBERON:0006240!6.37e-17!39;UBERON:0003056!1.87e-15!49;UBERON:0007811!7.97e-15!86;UBERON:0002021!1.83e-14!10;UBERON:0000411!1.83e-14!10;UBERON:0001950!1.83e-14!10;UBERON:0000153!6.88e-13!94;UBERON:0002298!1.08e-12!6;UBERON:0000956!1.24e-12!21;UBERON:0001869!1.24e-12!21;UBERON:0000203!1.24e-12!21;UBERON:0002619!1.03e-11!17;UBERON:0003076!1.18e-11!12;UBERON:0003057!1.18e-11!12;UBERON:0000025!8.57e-10!114;UBERON:0004111!1.75e-09!122;UBERON:0002950!6.15e-09!4;UBERON:0001891!6.15e-09!4;UBERON:0009616!6.15e-09!4;UBERON:0002240!7.11e-08!6;UBERON:0005174!7.11e-08!6;UBERON:0001137!7.11e-08!6;UBERON:0004684!1.85e-07!3;UBERON:0002275!1.85e-07!3;UBERON:0002038!6.42e-07!3;UBERON:0002308!6.42e-07!3;UBERON:0009663!6.42e-07!3;UBERON:0009661!6.42e-07!3;UBERON:0006331!6.42e-07!3;UBERON:0000125!6.42e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.24e-29,54;UBERON:0001049,6.52e-25,52;UBERON:0005068,6.52e-25,52;UBERON:0006241,6.52e-25,52;UBERON:0007135,6.52e-25,52;UBERON:0001017,9.17e-25,73;UBERON:0001016,5.64e-24,75;UBERON:0000955,8.25e-23,47;UBERON:0006238,8.25e-23,47;UBERON:0002616,7.62e-21,46;UBERON:0002020,1.26e-19,34;UBERON:0002346,2.04e-19,64;UBERON:0003075,2.04e-19,64;UBERON:0007284,2.04e-19,64;UBERON:0003080,4.21e-19,40;UBERON:0003528,6.58e-18,29;UBERON:0002791,6.58e-18,29;UBERON:0001893,6.58e-18,29;UBERON:0004121,6.63e-18,95;UBERON:0000924,6.63e-18,95;UBERON:0006601,6.63e-18,95;UBERON:0002021,6.88e-18,10;UBERON:0000411,6.88e-18,10;UBERON:0001950,6.88e-18,10;UBERON:0002780,4.48e-17,39;UBERON:0001890,4.48e-17,39;UBERON:0006240,4.48e-17,39;UBERON:0010371,1.77e-16,73;UBERON:0003056,6.02e-15,49;UBERON:0002950,2.81e-13,4;UBERON:0001891,2.81e-13,4;UBERON:0009616,2.81e-13,4;UBERON:0010286,2.81e-13,4;UBERON:0002619,5.12e-13,17;UBERON:0000956,1.19e-12,21;UBERON:0001869,1.19e-12,21;UBERON:0000203,1.19e-12,21;UBERON:0010314,3.70e-12,92;UBERON:0004684,6.18e-11,3;UBERON:0002275,6.18e-11,3;UBERON:0002038,4.42e-10,3;UBERON:0009663,4.42e-10,3;UBERON:0009661,4.42e-10,3;UBERON:0000125,4.42e-10,3;UBERON:0002308,4.42e-10,3;UBERON:0004111,4.77e-09,122;UBERON:0000025,5.97e-09,114;UBERON:0001896,1.35e-07,2;UBERON:0002298,1.35e-07,2;UBERON:0005290,1.35e-07,2;UBERON:0010096,1.35e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44573593256819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633831403506179,0,0,0,0,0,0,0.384218305321555,0.103689612308478,0,0,3.14216082844184,1.10434270475807,0,0,0,9.91042928994498,10.214987046815,10.9060638611933,0,0,0,8.65467296904281,3.37657566019008,3.51435969886663,0.294628585473668,0.854230084794618,0,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878342391034642,0.41889341362691,0,0,0,0,11.833460512981,5.94750783664214,0.125654352112864,2.60736480288415,2.81287003063364,9.97382613885888,7.78758062725237,0,0,0,0,0,0,0,0,0,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4450837762594,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,9.31193421929193,8.32202974804643,0,0,0,0,0,0,0,0,0,0,0,7.71171159412337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,10.9400928186201,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50471631210609,4.51801474093653,2.76195141904306,5.15605962095457,3.43706364687375,1.37016503954128,0.755393897389701,2.02506750069542,3.15224842256954,1.35942722695261,0,0,0,0,0,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191288332068843,0.220591419119515,0 | |||
|short_description=p@chr4:126429355..126429362,- | |||
}} |
Revision as of 03:47, 14 September 2013
Short description: | p@chr4:126429355..126429362, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:126429355..126429362, - |
Coexpression cluster: | MCL_coexpression_mm9:935 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 6.18e-11 | 3 |
neuron of the substantia nigra | 4.42e-10 | 3 |
CNS neuron (sensu Vertebrata) | 1.11e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.11e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.