FFCP PHASE1:Mm9::chr3:103190802..103190814,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=123|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:103190802..103190814,+|id=chr3:103190802..103190814,+|ontology_enrichment_celltype=CL:0000791!8.35e-16!9;CL:0000789!8.35e-16!9;CL:0002420!8.35e-16!9;CL:0002419!8.35e-16!9;CL:0000790!8.35e-16!9;CL:0000838!2.72e-14!12;CL:0000624!1.29e-13!8;CL:0000542!4.70e-13!13;CL:0000051!4.70e-13!13;CL:0000084!1.17e-12!11;CL:0000827!1.17e-12!11;CL:0002031!7.76e-11!25;CL:0000738!1.45e-09!17;CL:0002087!1.45e-09!17;CL:0000893!3.42e-09!6;CL:0002489!3.42e-09!6;CL:0000898!3.42e-09!6;CL:0000809!3.42e-09!6;CL:0000810!3.42e-09!6;CL:0000895!3.42e-09!6;CL:0000808!3.42e-09!6;CL:0000894!3.42e-09!6;CL:0000806!3.42e-09!6;CL:0000807!3.42e-09!6;CL:0000805!3.42e-09!6;CL:0002425!3.42e-09!6;CL:0002436!3.42e-09!6;CL:0002427!3.42e-09!6;CL:0002428!3.42e-09!6;CL:0002429!3.42e-09!6;CL:0002433!3.42e-09!6;CL:0002431!3.42e-09!6;CL:0002432!3.42e-09!6;CL:0000988!6.81e-08!32;CL:0002032!6.81e-08!32;CL:0000037!6.81e-08!32;CL:0000566!6.81e-08!32;CL:0000837!6.81e-08!32|ontology_enrichment_celltype_v019_2=CL:0000791,2.11e-22,9;CL:0000789,2.11e-22,9;CL:0002420,2.11e-22,9;CL:0002419,2.11e-22,9;CL:0000790,2.11e-22,9;CL:0000084,1.92e-18,11;CL:0000827,1.92e-18,11;CL:0000838,5.90e-17,12;CL:0000542,1.07e-15,13;CL:0000051,1.07e-15,13;CL:0000624,1.05e-14,8;CL:0000815,8.69e-14,1;CL:0000792,8.69e-14,1;CL:0000625,2.06e-13,1;CL:0000738,3.96e-12,17;CL:0002087,3.96e-12,17;CL:0002031,2.15e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.18e-27!29;UBERON:0002370!1.42e-25!23;UBERON:0000974!1.42e-25!23;UBERON:0004807!1.42e-25!23;UBERON:0005058!1.42e-25!23;UBERON:0003351!1.42e-25!23;UBERON:0009113!1.42e-25!23;UBERON:0003295!1.42e-25!23;UBERON:0009722!1.42e-25!23;UBERON:0005562!1.42e-25!23;UBERON:0007690!1.42e-25!23;UBERON:0006562!2.49e-24!24;UBERON:0003408!2.49e-24!24;UBERON:0001557!2.49e-24!24;UBERON:0001042!2.49e-24!24;UBERON:0008814!2.49e-24!24;UBERON:0009145!2.49e-24!24;UBERON:0002193!2.26e-22!48;UBERON:0002390!7.87e-22!45;UBERON:0003061!7.87e-22!45;UBERON:0000072!3.75e-21!27;UBERON:0000065!7.70e-20!41;UBERON:0001004!3.04e-19!42;UBERON:0000063!2.36e-15!35;UBERON:0003081!4.85e-14!88;UBERON:0002405!1.72e-13!70;UBERON:0005057!1.97e-13!51;UBERON:0005911!1.00e-09!69;UBERON:0000077!7.80e-09!97;UBERON:0001041!1.11e-08!92;UBERON:0002530!2.20e-08!65;UBERON:0003929!2.69e-08!55;UBERON:0002368!2.80e-08!60|ontology_enrichment_uberon_v019_2=UBERON:0000029,4.85e-14,1;UBERON:0001097,4.85e-14,1;UBERON:0003968,4.85e-14,1;UBERON:0001467,4.85e-14,1|phase1_expression=0,0,0,0,0,0,0,2.06597317506522,0.140788722151667,0.70219357896598,0,0.0797721589953364,1.71200729931206,0.874204024189974,0.333109761815663,0,0,0.473193248037357,0.548457734422955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,2.17608642603403,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,3.10725460376606,0.148442139064825,0,0,0,0,0,0,0,0.144599356919912,0.884610551949874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.335012514883631,0,0,0,0,0.159454768657487,0.327726629431476,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0.27338845544205,0.457556346413045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.79472541912506,0.961563596159751,0.738447635872886,0.706765149637033,0.914481679859998,0.403304740547362,0.877120926657772,1.73181314952593,3.74006086981021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr3:103190802..103190814,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=123 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:103190802..103190814,+ | |||
|id=chr3:103190802..103190814,+ | |||
|ontology_enrichment_celltype=CL:0000791!8.35e-16!9;CL:0000789!8.35e-16!9;CL:0002420!8.35e-16!9;CL:0002419!8.35e-16!9;CL:0000790!8.35e-16!9;CL:0000838!2.72e-14!12;CL:0000624!1.29e-13!8;CL:0000542!4.70e-13!13;CL:0000051!4.70e-13!13;CL:0000084!1.17e-12!11;CL:0000827!1.17e-12!11;CL:0002031!7.76e-11!25;CL:0000738!1.45e-09!17;CL:0002087!1.45e-09!17;CL:0000893!3.42e-09!6;CL:0002489!3.42e-09!6;CL:0000898!3.42e-09!6;CL:0000809!3.42e-09!6;CL:0000810!3.42e-09!6;CL:0000895!3.42e-09!6;CL:0000808!3.42e-09!6;CL:0000894!3.42e-09!6;CL:0000806!3.42e-09!6;CL:0000807!3.42e-09!6;CL:0000805!3.42e-09!6;CL:0002425!3.42e-09!6;CL:0002436!3.42e-09!6;CL:0002427!3.42e-09!6;CL:0002428!3.42e-09!6;CL:0002429!3.42e-09!6;CL:0002433!3.42e-09!6;CL:0002431!3.42e-09!6;CL:0002432!3.42e-09!6;CL:0000988!6.81e-08!32;CL:0002032!6.81e-08!32;CL:0000037!6.81e-08!32;CL:0000566!6.81e-08!32;CL:0000837!6.81e-08!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.11e-22,9;CL:0000789,2.11e-22,9;CL:0002420,2.11e-22,9;CL:0002419,2.11e-22,9;CL:0000790,2.11e-22,9;CL:0000084,1.92e-18,11;CL:0000827,1.92e-18,11;CL:0000838,5.90e-17,12;CL:0000542,1.07e-15,13;CL:0000051,1.07e-15,13;CL:0000624,1.05e-14,8;CL:0000815,8.69e-14,1;CL:0000792,8.69e-14,1;CL:0000625,2.06e-13,1;CL:0000738,3.96e-12,17;CL:0002087,3.96e-12,17;CL:0002031,2.15e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.18e-27!29;UBERON:0002370!1.42e-25!23;UBERON:0000974!1.42e-25!23;UBERON:0004807!1.42e-25!23;UBERON:0005058!1.42e-25!23;UBERON:0003351!1.42e-25!23;UBERON:0009113!1.42e-25!23;UBERON:0003295!1.42e-25!23;UBERON:0009722!1.42e-25!23;UBERON:0005562!1.42e-25!23;UBERON:0007690!1.42e-25!23;UBERON:0006562!2.49e-24!24;UBERON:0003408!2.49e-24!24;UBERON:0001557!2.49e-24!24;UBERON:0001042!2.49e-24!24;UBERON:0008814!2.49e-24!24;UBERON:0009145!2.49e-24!24;UBERON:0002193!2.26e-22!48;UBERON:0002390!7.87e-22!45;UBERON:0003061!7.87e-22!45;UBERON:0000072!3.75e-21!27;UBERON:0000065!7.70e-20!41;UBERON:0001004!3.04e-19!42;UBERON:0000063!2.36e-15!35;UBERON:0003081!4.85e-14!88;UBERON:0002405!1.72e-13!70;UBERON:0005057!1.97e-13!51;UBERON:0005911!1.00e-09!69;UBERON:0000077!7.80e-09!97;UBERON:0001041!1.11e-08!92;UBERON:0002530!2.20e-08!65;UBERON:0003929!2.69e-08!55;UBERON:0002368!2.80e-08!60 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000029,4.85e-14,1;UBERON:0001097,4.85e-14,1;UBERON:0003968,4.85e-14,1;UBERON:0001467,4.85e-14,1 | |||
|phase1_expression=0,0,0,0,0,0,0,2.06597317506522,0.140788722151667,0.70219357896598,0,0.0797721589953364,1.71200729931206,0.874204024189974,0.333109761815663,0,0,0.473193248037357,0.548457734422955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,2.17608642603403,1.68046899571232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,3.10725460376606,0.148442139064825,0,0,0,0,0,0,0,0.144599356919912,0.884610551949874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.335012514883631,0,0,0,0,0.159454768657487,0.327726629431476,0,0,0,0,0.491764273019036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0,0.341741761595705,0,0,0,0.27338845544205,0.457556346413045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0.358053391334963,0.79472541912506,0.961563596159751,0.738447635872886,0.706765149637033,0.914481679859998,0.403304740547362,0.877120926657772,1.73181314952593,3.74006086981021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr3:103190802..103190814,+ | |||
}} |
Revision as of 01:03, 14 September 2013
Short description: | p@chr3:103190802..103190814, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:103190802..103190814, + |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.11e-22 | 9 |
alpha-beta T cell | 2.11e-22 | 9 |
immature T cell | 2.11e-22 | 9 |
mature T cell | 2.11e-22 | 9 |
immature alpha-beta T cell | 2.11e-22 | 9 |
T cell | 1.92e-18 | 11 |
pro-T cell | 1.92e-18 | 11 |
lymphoid lineage restricted progenitor cell | 5.90e-17 | 12 |
lymphocyte | 1.07e-15 | 13 |
common lymphoid progenitor | 1.07e-15 | 13 |
CD4-positive, alpha-beta T cell | 1.05e-14 | 8 |
regulatory T cell | 8.69e-14 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.69e-14 | 1 |
CD8-positive, alpha-beta T cell | 2.06e-13 | 1 |
leukocyte | 3.96e-12 | 17 |
nongranular leukocyte | 3.96e-12 | 17 |
hematopoietic lineage restricted progenitor cell | 2.15e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
lymph node | 4.85e-14 | 1 |
axillary lymph node | 4.85e-14 | 1 |
peripheral lymph node | 4.85e-14 | 1 |
shoulder | 4.85e-14 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.