FFCP PHASE1:Mm9::chr4:48623313..48623320,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=230157|HGNC=|MCL_coexpression_id=20|UniProt=A2AML9|association_with_transcript=28bp_to_uc008svm.1_5end|description=CAGE_peak_12_at_Tmeff1_5end|id=chr4:48623313..48623320,+|ontology_enrichment_celltype=CL:0000117!2.86e-20!23;CL:0000337!2.86e-20!23;CL:0000540!1.01e-12!33;CL:0000047!1.01e-12!33;CL:0000031!1.01e-12!33;CL:0000404!1.01e-12!33;CL:0002319!2.46e-11!43;CL:0000221!5.77e-11!44;CL:0000133!5.77e-11!44;CL:0000393!4.42e-10!39;CL:0000211!4.42e-10!39;CL:0000055!4.62e-09!50;CL:0002610!7.35e-07!3;CL:0002614!7.68e-07!3|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.87e-19!73;UBERON:0005743!1.87e-19!73;UBERON:0000073!1.05e-18!75;UBERON:0001016!1.05e-18!75;UBERON:0001049!1.33e-18!52;UBERON:0005068!1.33e-18!52;UBERON:0006241!1.33e-18!52;UBERON:0007135!1.33e-18!52;UBERON:0004121!1.27e-16!102;UBERON:0000924!1.27e-16!102;UBERON:0006601!1.27e-16!102;UBERON:0002020!2.49e-15!34;UBERON:0002616!2.63e-15!49;UBERON:0002346!3.99e-15!71;UBERON:0003075!3.99e-15!71;UBERON:0007284!3.99e-15!71;UBERON:0000955!7.13e-15!50;UBERON:0006238!7.13e-15!50;UBERON:0002298!2.16e-12!6;UBERON:0003076!9.51e-12!12;UBERON:0003057!9.51e-12!12;UBERON:0000033!1.55e-11!63;UBERON:0002240!5.38e-11!6;UBERON:0005174!5.38e-11!6;UBERON:0001137!5.38e-11!6;UBERON:0002420!1.02e-10!8;UBERON:0007245!1.02e-10!8;UBERON:0010009!1.02e-10!8;UBERON:0010011!1.02e-10!8;UBERON:0000454!1.02e-10!8;UBERON:0003080!1.32e-09!40;UBERON:0002791!1.42e-09!29;UBERON:0003528!1.42e-09!29;UBERON:0001893!1.42e-09!29;UBERON:0001948!3.96e-09!5;UBERON:0002315!3.96e-09!5;UBERON:0002950!1.30e-08!4;UBERON:0001891!1.30e-08!4;UBERON:0009616!1.30e-08!4;UBERON:0002780!1.43e-08!39;UBERON:0001890!1.43e-08!39;UBERON:0006240!1.43e-08!39;UBERON:0003056!5.72e-08!49;UBERON:0007811!1.56e-07!86;UBERON:0004684!7.35e-07!3;UBERON:0002275!7.35e-07!3;UBERON:0002038!7.68e-07!3;UBERON:0002308!7.68e-07!3;UBERON:0009663!7.68e-07!3;UBERON:0009661!7.68e-07!3;UBERON:0006331!7.68e-07!3;UBERON:0000125!7.68e-07!3;UBERON:0000025!9.46e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.10e-23,2;UBERON:0002298,5.10e-23,2;UBERON:0005290,5.10e-23,2;UBERON:0010096,5.10e-23,2;UBERON:0001049,2.28e-10,52;UBERON:0005068,2.28e-10,52;UBERON:0006241,2.28e-10,52;UBERON:0007135,2.28e-10,52;UBERON:0000073,6.33e-10,54;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0003076,5.92e-09,12;UBERON:0003057,5.92e-09,12;UBERON:0002616,1.08e-08,46;UBERON:0000955,1.66e-08,47;UBERON:0006238,1.66e-08,47;UBERON:0002346,2.08e-08,64;UBERON:0003075,2.08e-08,64;UBERON:0007284,2.08e-08,64;UBERON:0004733,2.45e-08,6;UBERON:0004732,2.45e-08,6;UBERON:0002028,2.45e-08,6;UBERON:0007277,2.45e-08,6;UBERON:0010371,2.35e-07,73;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0.384218305321555,0,0.270011876663381,0,0.285650984403804,0.220868540951614,0,0,1.83843757322004,1.10115880999389,0.766124028511126,0.614426133024974,0.131886287730194,0.274462930807229,0,1.95428099300967,0.56276261003168,0.61119299110724,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.898743836428936,0.915001205637253,0.125654352112864,0,0.255715457330331,2.0778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0,0,0,0,0,0,1.60550589987792,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0.164140899745061,0,1.8542530201051,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0.460325236507177,1.14579102687879,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p12@Tmeff1}} | ||
|EntrezGene=230157 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=A2AML9 | |||
|association_with_transcript=28bp_to_uc008svm.1_5end | |||
|description=CAGE_peak_12_at_Tmeff1_5end | |||
|id=chr4:48623313..48623320,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.86e-20!23;CL:0000337!2.86e-20!23;CL:0000540!1.01e-12!33;CL:0000047!1.01e-12!33;CL:0000031!1.01e-12!33;CL:0000404!1.01e-12!33;CL:0002319!2.46e-11!43;CL:0000221!5.77e-11!44;CL:0000133!5.77e-11!44;CL:0000393!4.42e-10!39;CL:0000211!4.42e-10!39;CL:0000055!4.62e-09!50;CL:0002610!7.35e-07!3;CL:0002614!7.68e-07!3 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.87e-19!73;UBERON:0005743!1.87e-19!73;UBERON:0000073!1.05e-18!75;UBERON:0001016!1.05e-18!75;UBERON:0001049!1.33e-18!52;UBERON:0005068!1.33e-18!52;UBERON:0006241!1.33e-18!52;UBERON:0007135!1.33e-18!52;UBERON:0004121!1.27e-16!102;UBERON:0000924!1.27e-16!102;UBERON:0006601!1.27e-16!102;UBERON:0002020!2.49e-15!34;UBERON:0002616!2.63e-15!49;UBERON:0002346!3.99e-15!71;UBERON:0003075!3.99e-15!71;UBERON:0007284!3.99e-15!71;UBERON:0000955!7.13e-15!50;UBERON:0006238!7.13e-15!50;UBERON:0002298!2.16e-12!6;UBERON:0003076!9.51e-12!12;UBERON:0003057!9.51e-12!12;UBERON:0000033!1.55e-11!63;UBERON:0002240!5.38e-11!6;UBERON:0005174!5.38e-11!6;UBERON:0001137!5.38e-11!6;UBERON:0002420!1.02e-10!8;UBERON:0007245!1.02e-10!8;UBERON:0010009!1.02e-10!8;UBERON:0010011!1.02e-10!8;UBERON:0000454!1.02e-10!8;UBERON:0003080!1.32e-09!40;UBERON:0002791!1.42e-09!29;UBERON:0003528!1.42e-09!29;UBERON:0001893!1.42e-09!29;UBERON:0001948!3.96e-09!5;UBERON:0002315!3.96e-09!5;UBERON:0002950!1.30e-08!4;UBERON:0001891!1.30e-08!4;UBERON:0009616!1.30e-08!4;UBERON:0002780!1.43e-08!39;UBERON:0001890!1.43e-08!39;UBERON:0006240!1.43e-08!39;UBERON:0003056!5.72e-08!49;UBERON:0007811!1.56e-07!86;UBERON:0004684!7.35e-07!3;UBERON:0002275!7.35e-07!3;UBERON:0002038!7.68e-07!3;UBERON:0002308!7.68e-07!3;UBERON:0009663!7.68e-07!3;UBERON:0009661!7.68e-07!3;UBERON:0006331!7.68e-07!3;UBERON:0000125!7.68e-07!3;UBERON:0000025!9.46e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,5.10e-23,2;UBERON:0002298,5.10e-23,2;UBERON:0005290,5.10e-23,2;UBERON:0010096,5.10e-23,2;UBERON:0001049,2.28e-10,52;UBERON:0005068,2.28e-10,52;UBERON:0006241,2.28e-10,52;UBERON:0007135,2.28e-10,52;UBERON:0000073,6.33e-10,54;UBERON:0001017,1.46e-09,73;UBERON:0001016,2.65e-09,75;UBERON:0003076,5.92e-09,12;UBERON:0003057,5.92e-09,12;UBERON:0002616,1.08e-08,46;UBERON:0000955,1.66e-08,47;UBERON:0006238,1.66e-08,47;UBERON:0002346,2.08e-08,64;UBERON:0003075,2.08e-08,64;UBERON:0007284,2.08e-08,64;UBERON:0004733,2.45e-08,6;UBERON:0004732,2.45e-08,6;UBERON:0002028,2.45e-08,6;UBERON:0007277,2.45e-08,6;UBERON:0010371,2.35e-07,73;UBERON:0004121,2.60e-07,95;UBERON:0000924,2.60e-07,95;UBERON:0006601,2.60e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0.384218305321555,0,0.270011876663381,0,0.285650984403804,0.220868540951614,0,0,1.83843757322004,1.10115880999389,0.766124028511126,0.614426133024974,0.131886287730194,0.274462930807229,0,1.95428099300967,0.56276261003168,0.61119299110724,0.589257170947335,0.284743361598206,0.186399445825301,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0.898743836428936,0.915001205637253,0.125654352112864,0,0.255715457330331,2.0778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0.221464689648775,0,0,0,0,0,0,0,0,1.60550589987792,2.10981035865966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0,0,0,0.164140899745061,0,1.8542530201051,0,0,0.185194527369712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0.460325236507177,1.14579102687879,0.171853182343688,0,0,0,0,0,0,0.103787347584177,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@Tmeff1 | |||
}} |
Revision as of 05:11, 14 September 2013
Short description: | p12@Tmeff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_Tmeff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 28bp_to_uc008svm.1_5end |
EntrezGene: | Tmeff1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 5.10e-23 | 2 |
brainstem | 5.10e-23 | 2 |
myelencephalon | 5.10e-23 | 2 |
future myelencephalon | 5.10e-23 | 2 |
neural tube | 2.28e-10 | 52 |
neural rod | 2.28e-10 | 52 |
future spinal cord | 2.28e-10 | 52 |
neural keel | 2.28e-10 | 52 |
regional part of nervous system | 6.33e-10 | 54 |
central nervous system | 1.46e-09 | 73 |
nervous system | 2.65e-09 | 75 |
posterior neural tube | 5.92e-09 | 12 |
chordal neural plate | 5.92e-09 | 12 |
regional part of brain | 1.08e-08 | 46 |
brain | 1.66e-08 | 47 |
future brain | 1.66e-08 | 47 |
neurectoderm | 2.08e-08 | 64 |
neural plate | 2.08e-08 | 64 |
presumptive neural plate | 2.08e-08 | 64 |
segmental subdivision of hindbrain | 2.45e-08 | 6 |
segmental subdivision of nervous system | 2.45e-08 | 6 |
hindbrain | 2.45e-08 | 6 |
presumptive hindbrain | 2.45e-08 | 6 |
ecto-epithelium | 2.35e-07 | 73 |
ectoderm-derived structure | 2.60e-07 | 95 |
ectoderm | 2.60e-07 | 95 |
presumptive ectoderm | 2.60e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.