FFCP PHASE1:Mm9::chr3:66789869..66789908,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66880|HGNC=|MCL_coexpression_id=0|UniProt=E0CX50,Q9DBU6|association_with_transcript=0bp_to_ENSMUST00000160504,ENSMUST00000161726_5end|description=CAGE_peak_4_at_Rsrc1_5end|id=chr3:66789869..66789908,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.78e-12!73;UBERON:0005743!8.78e-12!73;UBERON:0000073!7.33e-11!75;UBERON:0001016!7.33e-11!75;UBERON:0000033!7.47e-10!63;UBERON:0002346!1.52e-09!71;UBERON:0003075!1.52e-09!71;UBERON:0007284!1.52e-09!71;UBERON:0004121!1.58e-09!102;UBERON:0000924!1.58e-09!102;UBERON:0006601!1.58e-09!102;UBERON:0000955!2.93e-09!50;UBERON:0006238!2.93e-09!50;UBERON:0002616!7.42e-09!49;UBERON:0001049!1.98e-08!52;UBERON:0005068!1.98e-08!52;UBERON:0006241!1.98e-08!52;UBERON:0007135!1.98e-08!52;UBERON:0003056!3.51e-08!49;UBERON:0003080!9.14e-08!40;UBERON:0002780!2.14e-07!39;UBERON:0001890!2.14e-07!39;UBERON:0006240!2.14e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.49e-16,73;UBERON:0001016,5.11e-15,75;UBERON:0000955,1.34e-12,47;UBERON:0006238,1.34e-12,47;UBERON:0004121,1.55e-12,95;UBERON:0000924,1.55e-12,95;UBERON:0006601,1.55e-12,95;UBERON:0002346,2.15e-12,64;UBERON:0003075,2.15e-12,64;UBERON:0007284,2.15e-12,64;UBERON:0002616,6.19e-12,46;UBERON:0000073,7.84e-12,54;UBERON:0001049,1.54e-11,52;UBERON:0005068,1.54e-11,52;UBERON:0006241,1.54e-11,52;UBERON:0007135,1.54e-11,52;UBERON:0003080,3.48e-11,40;UBERON:0010371,3.88e-11,73;UBERON:0003056,6.49e-11,49;UBERON:0002780,1.44e-10,39;UBERON:0001890,1.44e-10,39;UBERON:0006240,1.44e-10,39;UBERON:0001894,2.73e-08,10;UBERON:0006222,2.73e-08,10;UBERON:0010314,2.64e-07,92|phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0,0.258246646883153,0,0,0.34243593645101,0,0,0.0874204024189974,0,0,0,0,0,0,9.18467533631554,0.198581902401771,0,0.159992422793407,0.45881856213434,0,0,0,0,0.252030129759931,0,1.27006134691926,0.61506478758457,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,1.25896817975577,1.01376931219515,0.550640256485045,0,0.65407546914134,0.219686182734472,0.194429899074283,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0.771778308107841,0,0.515672092277442,0.606949382578793,1.5869729378161,1.26766280701236,0.677689064138264,0,0,0,0,0,0.768436610643109,0.103689612308478,0.270011876663381,0.210324961351382,0.285650984403804,0.662605622854841,0.367472397644862,0.479227355091182,0,0,2.93680877595932,1.84327839907492,1.45074916503213,0.731901148819277,1.04182674111352,3.07101298901519,0.56276261003168,1.06958773443767,0,1.28134512719193,0.559198337475902,0.151452386666368,0.0755715601067855,0,0.860423876981386,0,1.07940638327563,1.29955283489534,0.896053774194671,1.82577746171277,0.340860645156116,0,0.35333957451034,1.26759077799012,1.28326477414318,5.09610479413291,7.11066703153331,0.216491041011214,0.506719730950197,0.505524445014783,1.7127581957859,0.776813650941515,0.593768556259299,0.346970653532272,0.608930956624282,0.461230994512117,0.301445281105245,0.823120949949934,0.753999547978053,0.494389935468748,0,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,0.83778682725382,0,0,0,0.127070227073065,1.49790639404823,3.20250421973039,0.628271760564322,1.91206752211504,5.37002460393694,3.32460871295296,1.78465389374533,0.611036183101898,0.622034853050465,0.758168275301024,0.210441855886474,1.04096354370163,0.689706313300419,1.44049703844279,1.05493372485001,0.408218994907967,0.640568601424249,0.374806898238915,1.29351685369508,1.5089759505299,1.89106080167819,1.93546236580344,1.09597866213787,0.556094498451196,0,1.23469281844766,1.39323986772945,0,0,0,0.621377317606506,1.87620847984877,0.900310307305074,0.946978942340841,0.196764231747404,0,0.930135779001631,0,0.233530684734339,0,0.32833492815819,0.162137619091711,0.438599962275997,0.439100230582101,0.268412837520744,2.3131894342054,0.514523061896422,0.330418782983798,0.528901133327089,1.06644125267617,1.39342003116263,0.644337306610467,1.4117846723634,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0.198956472041151,0.58489226135736,0,0.216138049874694,0.199141273254367,0.189667900953082,1.02823661348756,0,2.03651327845314,0.775809948670503,0.911765658574141,0.822074982615345,0.738050739898011,0.784993639206874,0.987177311374404,1.1858105083486,0.166845105716094,0.196558995113203,0.449724224769707,0.608580364165509,0.964708639009667,0.25462585178142,0.287696137450811,0.486405680325106,0.274561413188081,1.43768206527355,0,1.24815069245824,0.505157755894224,0.717589654087649,0.482443521363367,0.369506380333209,1.70542270593436,0.488894929326078,1.01847051465113,0.704070744865506,0.335012514883631,0.238043640886014,0.585400943573396,0.472905432318573,0.44292937929755,0.159454768657487,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0.551873492609465,2.40825884981688,1.64096361229084,0.491804836130026,0.504941854408746,2.52406575533005,0.78087748859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| ||
|EntrezGene=66880 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=E0CX50,Q9DBU6 | |||
|association_with_transcript=0bp_to_ENSMUST00000160504,ENSMUST00000161726_5end | |||
|description=CAGE_peak_4_at_Rsrc1_5end | |||
|id=chr3:66789869..66789908,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.78e-12!73;UBERON:0005743!8.78e-12!73;UBERON:0000073!7.33e-11!75;UBERON:0001016!7.33e-11!75;UBERON:0000033!7.47e-10!63;UBERON:0002346!1.52e-09!71;UBERON:0003075!1.52e-09!71;UBERON:0007284!1.52e-09!71;UBERON:0004121!1.58e-09!102;UBERON:0000924!1.58e-09!102;UBERON:0006601!1.58e-09!102;UBERON:0000955!2.93e-09!50;UBERON:0006238!2.93e-09!50;UBERON:0002616!7.42e-09!49;UBERON:0001049!1.98e-08!52;UBERON:0005068!1.98e-08!52;UBERON:0006241!1.98e-08!52;UBERON:0007135!1.98e-08!52;UBERON:0003056!3.51e-08!49;UBERON:0003080!9.14e-08!40;UBERON:0002780!2.14e-07!39;UBERON:0001890!2.14e-07!39;UBERON:0006240!2.14e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.49e-16,73;UBERON:0001016,5.11e-15,75;UBERON:0000955,1.34e-12,47;UBERON:0006238,1.34e-12,47;UBERON:0004121,1.55e-12,95;UBERON:0000924,1.55e-12,95;UBERON:0006601,1.55e-12,95;UBERON:0002346,2.15e-12,64;UBERON:0003075,2.15e-12,64;UBERON:0007284,2.15e-12,64;UBERON:0002616,6.19e-12,46;UBERON:0000073,7.84e-12,54;UBERON:0001049,1.54e-11,52;UBERON:0005068,1.54e-11,52;UBERON:0006241,1.54e-11,52;UBERON:0007135,1.54e-11,52;UBERON:0003080,3.48e-11,40;UBERON:0010371,3.88e-11,73;UBERON:0003056,6.49e-11,49;UBERON:0002780,1.44e-10,39;UBERON:0001890,1.44e-10,39;UBERON:0006240,1.44e-10,39;UBERON:0001894,2.73e-08,10;UBERON:0006222,2.73e-08,10;UBERON:0010314,2.64e-07,92 | |||
|phase1_expression=1.76163731815273,0,0,0,0,0.16787927191189,0,0.258246646883153,0,0,0.34243593645101,0,0,0.0874204024189974,0,0,0,0,0,0,9.18467533631554,0.198581902401771,0,0.159992422793407,0.45881856213434,0,0,0,0,0.252030129759931,0,1.27006134691926,0.61506478758457,0,0.288851619751275,0,0.408338712524738,0,0,0,0,0,0,1.25896817975577,1.01376931219515,0.550640256485045,0,0.65407546914134,0.219686182734472,0.194429899074283,0.279972843250725,1.43752564364972,0.167782606057736,0,0,0.771778308107841,0,0.515672092277442,0.606949382578793,1.5869729378161,1.26766280701236,0.677689064138264,0,0,0,0,0,0.768436610643109,0.103689612308478,0.270011876663381,0.210324961351382,0.285650984403804,0.662605622854841,0.367472397644862,0.479227355091182,0,0,2.93680877595932,1.84327839907492,1.45074916503213,0.731901148819277,1.04182674111352,3.07101298901519,0.56276261003168,1.06958773443767,0,1.28134512719193,0.559198337475902,0.151452386666368,0.0755715601067855,0,0.860423876981386,0,1.07940638327563,1.29955283489534,0.896053774194671,1.82577746171277,0.340860645156116,0,0.35333957451034,1.26759077799012,1.28326477414318,5.09610479413291,7.11066703153331,0.216491041011214,0.506719730950197,0.505524445014783,1.7127581957859,0.776813650941515,0.593768556259299,0.346970653532272,0.608930956624282,0.461230994512117,0.301445281105245,0.823120949949934,0.753999547978053,0.494389935468748,0,0.884610551949874,0.161766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,0.83778682725382,0,0,0,0.127070227073065,1.49790639404823,3.20250421973039,0.628271760564322,1.91206752211504,5.37002460393694,3.32460871295296,1.78465389374533,0.611036183101898,0.622034853050465,0.758168275301024,0.210441855886474,1.04096354370163,0.689706313300419,1.44049703844279,1.05493372485001,0.408218994907967,0.640568601424249,0.374806898238915,1.29351685369508,1.5089759505299,1.89106080167819,1.93546236580344,1.09597866213787,0.556094498451196,0,1.23469281844766,1.39323986772945,0,0,0,0.621377317606506,1.87620847984877,0.900310307305074,0.946978942340841,0.196764231747404,0,0.930135779001631,0,0.233530684734339,0,0.32833492815819,0.162137619091711,0.438599962275997,0.439100230582101,0.268412837520744,2.3131894342054,0.514523061896422,0.330418782983798,0.528901133327089,1.06644125267617,1.39342003116263,0.644337306610467,1.4117846723634,0.22237804384487,0.380451252225118,0,0.329397909448022,0,0.198956472041151,0.58489226135736,0,0.216138049874694,0.199141273254367,0.189667900953082,1.02823661348756,0,2.03651327845314,0.775809948670503,0.911765658574141,0.822074982615345,0.738050739898011,0.784993639206874,0.987177311374404,1.1858105083486,0.166845105716094,0.196558995113203,0.449724224769707,0.608580364165509,0.964708639009667,0.25462585178142,0.287696137450811,0.486405680325106,0.274561413188081,1.43768206527355,0,1.24815069245824,0.505157755894224,0.717589654087649,0.482443521363367,0.369506380333209,1.70542270593436,0.488894929326078,1.01847051465113,0.704070744865506,0.335012514883631,0.238043640886014,0.585400943573396,0.472905432318573,0.44292937929755,0.159454768657487,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0.551873492609465,2.40825884981688,1.64096361229084,0.491804836130026,0.504941854408746,2.52406575533005,0.780877488593277,1.29254038639679,0.238968797952552,1.33679204449436,1.41538265394416,0.809621403349789,0.584511715822624,3.16230222357219,1.60660658210904,0.99358059645788,1.24645922567079,0.651547837414304,0.659880491890142,2.65490276679926,1.45668381692989,1.51161778482376,0.943025398779491,0.295301892880773,0.614870295887855,0,1.09060118843252,0.356497378384721,0.316036757935816,1.05418608574999,0,4.08527526904546,2.34079422240703,1.29358683782755,1.50035924522115,1.77340233642274,1.78368817602071,2.30368628842969,0,0.704015124191131,0.42366414172764,0.661585194164886,0,0.161464426695906,0.301564624640779,0.119372344003136,0.492422699235184,0,2.96680483216816,0.170870880797853,0,0.370389054739423,0.188368457004691,0,0,0.679913719975421,0.139951452323658,0,0,0.632671987162271,0.609958401380546,0.540026704109006,0.418176592028937,0,0.134864346384821,0.330613822901344,0,0.259229946583586,0.621339313086926,67.0794597034186,1.19613236835183,1.15820943319968,0.972255941720238,0.645799117388655,1.520605129417,1.29092962510329,0.781226309063701,0.943734099831398,21.2594026326885,31.3952706821073,0.632022241256357,0,0.513554785824136,0.129920822977795,0.537080087002444,0.596044064343795,0.360586348559907,0.295379054349154,0.302899349844443,0.0762068066549998,0.100826185136841,0.194915761479505,0.0962118416403295,0,0,0.887943813496259,0.269141569828427,1.67884616364078,0,0.187682475451182,0.549454872801795,0.214368379079066,0.501572104035363,2.82375921308533,2.76195141904306,0.572895513439397,1.71853182343688,1.37016503954128,1.5107877947794,2.02506750069542,0.900642406448441,1.81256963593682,2.5888015587591,1.03787347584177,1.19707462020309,0.853668028770671,0.243106717068294,0.419226325255965,0.73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| |||
|short_description=p4@Rsrc1 | |||
}} | |||
Revision as of 02:27, 14 September 2013
| Short description: | p4@Rsrc1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Rsrc1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | 0bp_to_ENSMUST00000160504, ENSMUST00000161726_5end |
| EntrezGene: | Rsrc1 |
| Link to Zenbu: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 8.49e-16 | 73 |
| nervous system | 5.11e-15 | 75 |
| brain | 1.34e-12 | 47 |
| future brain | 1.34e-12 | 47 |
| ectoderm-derived structure | 1.55e-12 | 95 |
| ectoderm | 1.55e-12 | 95 |
| presumptive ectoderm | 1.55e-12 | 95 |
| neurectoderm | 2.15e-12 | 64 |
| neural plate | 2.15e-12 | 64 |
| presumptive neural plate | 2.15e-12 | 64 |
| regional part of brain | 6.19e-12 | 46 |
| regional part of nervous system | 7.84e-12 | 54 |
| neural tube | 1.54e-11 | 52 |
| neural rod | 1.54e-11 | 52 |
| future spinal cord | 1.54e-11 | 52 |
| neural keel | 1.54e-11 | 52 |
| anterior neural tube | 3.48e-11 | 40 |
| ecto-epithelium | 3.88e-11 | 73 |
| pre-chordal neural plate | 6.49e-11 | 49 |
| regional part of forebrain | 1.44e-10 | 39 |
| forebrain | 1.44e-10 | 39 |
| future forebrain | 1.44e-10 | 39 |
| diencephalon | 2.73e-08 | 10 |
| future diencephalon | 2.73e-08 | 10 |
| structure with developmental contribution from neural crest | 2.64e-07 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
