FFCP PHASE1:Mm9::chr4:126145824..126145897,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=236511|HGNC=|MCL_coexpression_id=22|UniProt=Q8CJG1|association_with_transcript=0bp_to_ENSMUST00000097888_5end|description=CAGE_peak_1_at_Eif2c1_5end|id=chr4:126145824..126145897,-|ontology_enrichment_celltype=CL:0000540!1.28e-19!33;CL:0000047!1.28e-19!33;CL:0000031!1.28e-19!33;CL:0000404!1.28e-19!33;CL:0000221!1.16e-16!44;CL:0000133!1.16e-16!44;CL:0002319!2.91e-16!43;CL:0000117!6.51e-16!23;CL:0000337!6.51e-16!23;CL:0000393!1.24e-14!39;CL:0000211!1.24e-14!39;CL:0000055!1.16e-11!50;CL:0002321!6.00e-08!70;CL:0000220!6.00e-08!70|ontology_enrichment_celltype_v019_2=CL:0000540,1.28e-19,33;CL:0000047,1.28e-19,33;CL:0000031,1.28e-19,33;CL:0000404,1.28e-19,33;CL:0000221,1.16e-16,44;CL:0000133,1.16e-16,44;CL:0002319,2.91e-16,43;CL:0000117,6.51e-16,23;CL:0000337,6.51e-16,23;CL:0000393,1.24e-14,39;CL:0000211,1.24e-14,39;CL:0002321,6.00e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.34e-29!73;UBERON:0005743!4.34e-29!73;UBERON:0004121!8.48e-28!102;UBERON:0000924!8.48e-28!102;UBERON:0006601!8.48e-28!102;UBERON:0000073!8.55e-28!75;UBERON:0001016!8.55e-28!75;UBERON:0000033!1.12e-20!63;UBERON:0002346!2.83e-20!71;UBERON:0003075!2.83e-20!71;UBERON:0007284!2.83e-20!71;UBERON:0007811!2.16e-19!86;UBERON:0001049!1.08e-18!52;UBERON:0005068!1.08e-18!52;UBERON:0006241!1.08e-18!52;UBERON:0007135!1.08e-18!52;UBERON:0000153!3.56e-18!94;UBERON:0003056!6.52e-18!49;UBERON:0000955!2.34e-17!50;UBERON:0006238!2.34e-17!50;UBERON:0002616!7.24e-17!49;UBERON:0002020!7.17e-15!34;UBERON:0003080!1.64e-14!40;UBERON:0002780!3.45e-14!39;UBERON:0001890!3.45e-14!39;UBERON:0006240!3.45e-14!39;UBERON:0002791!8.06e-12!29;UBERON:0003528!8.06e-12!29;UBERON:0001893!8.06e-12!29;UBERON:0000475!9.22e-08!200;UBERON:0000956!1.38e-07!21;UBERON:0001869!1.38e-07!21;UBERON:0000203!1.38e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.93e-31,95;UBERON:0000924,4.93e-31,95;UBERON:0006601,4.93e-31,95;UBERON:0001017,4.34e-29,73;UBERON:0001016,8.55e-28,75;UBERON:0010371,6.48e-25,73;UBERON:0002346,7.66e-24,64;UBERON:0003075,7.66e-24,64;UBERON:0007284,7.66e-24,64;UBERON:0000073,4.80e-20,54;UBERON:0001049,1.08e-18,52;UBERON:0005068,1.08e-18,52;UBERON:0006241,1.08e-18,52;UBERON:0007135,1.08e-18,52;UBERON:0003056,6.52e-18,49;UBERON:0000955,1.50e-15,47;UBERON:0006238,1.50e-15,47;UBERON:0002616,4.50e-15,46;UBERON:0002020,7.17e-15,34;UBERON:0003080,1.64e-14,40;UBERON:0002780,3.45e-14,39;UBERON:0001890,3.45e-14,39;UBERON:0006240,3.45e-14,39;UBERON:0010314,7.58e-12,92;UBERON:0003528,8.06e-12,29;UBERON:0002791,8.06e-12,29;UBERON:0001893,8.06e-12,29;UBERON:0011216,8.14e-10,194;UBERON:0000956,1.38e-07,21;UBERON:0001869,1.38e-07,21;UBERON:0000203,1.38e-07,21|phase1_expression=24.3426247599287,8.02643437570531,16.3799726180233,18.1478526784098,17.0304548181758,14.9412552001582,15.4184342793047,16.7860320474049,10.559154161375,8.89445200023575,14.3823093309424,15.8746596400719,23.6257007305064,14.9488888136486,7.66152452176024,9.31386229993199,5.59649502502517,23.1864691538305,26.1888568186961,21.6438722416995,17.6890043514225,16.1844250457443,14.3659884026414,10.7194923271582,9.63518980482114,9.76194338995534,13.3536218809313,11.2045040996662,10.6413114895569,8.56902441183765,5.32153225572731,10.7955214488137,12.916360539276,31.6963362030877,13.8648777480612,11.9688944658114,16.1293791447272,5.85944283031671,3.1253413780952,6.80580867165938,7.05877785637217,8.19654581950135,6.79714494243615,9.19046771221714,8.61703915365874,7.70896359079063,13.3006528539167,20.7123898561424,11.4236815021925,15.748821825017,22.8177867249341,41.6882436658418,29.0263908479884,26.8383992544197,30.5845357219642,16.7218633423366,18.0516067161417,19.5955395065428,67.9783308488249,62.4209355540999,93.8070477189145,12.5372476865579,18.6751907183339,20.2477436388315,22.7439263390404,13.4991221839759,27.2636100571748,23.8215349299364,93.4243406899384,93.6941212021933,83.4990096564987,44.5615535669934,47.4867363045969,72.024589938393,90.7656610542698,124.094536192353,55.0579404996944,42.7752582585379,43.6242554447731,70.2953913601933,65.5051528193253,53.6540771673463,42.7149988472113,39.9561453122493,39.5747461741938,49.4976023595762,47.6945130676995,49.9550514811806,7.87552410665114,19.4974625075507,23.1891590961342,4.30211938490693,3.39985666853875,22.6675340487883,12.3457519315057,14.7848872742121,13.0613310722529,10.0553890321054,7.53379413348319,5.65343319216544,31.1263957706464,17.9657068380045,20.3844191765317,35.5533351576666,16.0203370348298,13.4280728701802,14.6602089054287,9.47726201668198,16.0541487861246,18.5552673831031,15.9606500624845,10.0473607843007,10.1470818792666,11.7563659631046,16.344830291863,23.24831939599,6.92145909656247,13.4477401935518,9.73071607144862,9.38247729694973,12.1462835153216,7.27312879702833,13.0474232852686,32.2058876712702,28.9036455402568,9.96282515313506,11.1428065790506,6.59893004092748,9.53026703047985,29.3589653233452,28.8225379775735,47.3716907465499,23.292458905765,21.9915293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| ||
|EntrezGene=236511 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q8CJG1 | |||
|association_with_transcript=0bp_to_ENSMUST00000097888_5end | |||
|description=CAGE_peak_1_at_Eif2c1_5end | |||
|id=chr4:126145824..126145897,- | |||
|ontology_enrichment_celltype=CL:0000540!1.28e-19!33;CL:0000047!1.28e-19!33;CL:0000031!1.28e-19!33;CL:0000404!1.28e-19!33;CL:0000221!1.16e-16!44;CL:0000133!1.16e-16!44;CL:0002319!2.91e-16!43;CL:0000117!6.51e-16!23;CL:0000337!6.51e-16!23;CL:0000393!1.24e-14!39;CL:0000211!1.24e-14!39;CL:0000055!1.16e-11!50;CL:0002321!6.00e-08!70;CL:0000220!6.00e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.28e-19,33;CL:0000047,1.28e-19,33;CL:0000031,1.28e-19,33;CL:0000404,1.28e-19,33;CL:0000221,1.16e-16,44;CL:0000133,1.16e-16,44;CL:0002319,2.91e-16,43;CL:0000117,6.51e-16,23;CL:0000337,6.51e-16,23;CL:0000393,1.24e-14,39;CL:0000211,1.24e-14,39;CL:0002321,6.00e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.34e-29!73;UBERON:0005743!4.34e-29!73;UBERON:0004121!8.48e-28!102;UBERON:0000924!8.48e-28!102;UBERON:0006601!8.48e-28!102;UBERON:0000073!8.55e-28!75;UBERON:0001016!8.55e-28!75;UBERON:0000033!1.12e-20!63;UBERON:0002346!2.83e-20!71;UBERON:0003075!2.83e-20!71;UBERON:0007284!2.83e-20!71;UBERON:0007811!2.16e-19!86;UBERON:0001049!1.08e-18!52;UBERON:0005068!1.08e-18!52;UBERON:0006241!1.08e-18!52;UBERON:0007135!1.08e-18!52;UBERON:0000153!3.56e-18!94;UBERON:0003056!6.52e-18!49;UBERON:0000955!2.34e-17!50;UBERON:0006238!2.34e-17!50;UBERON:0002616!7.24e-17!49;UBERON:0002020!7.17e-15!34;UBERON:0003080!1.64e-14!40;UBERON:0002780!3.45e-14!39;UBERON:0001890!3.45e-14!39;UBERON:0006240!3.45e-14!39;UBERON:0002791!8.06e-12!29;UBERON:0003528!8.06e-12!29;UBERON:0001893!8.06e-12!29;UBERON:0000475!9.22e-08!200;UBERON:0000956!1.38e-07!21;UBERON:0001869!1.38e-07!21;UBERON:0000203!1.38e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.93e-31,95;UBERON:0000924,4.93e-31,95;UBERON:0006601,4.93e-31,95;UBERON:0001017,4.34e-29,73;UBERON:0001016,8.55e-28,75;UBERON:0010371,6.48e-25,73;UBERON:0002346,7.66e-24,64;UBERON:0003075,7.66e-24,64;UBERON:0007284,7.66e-24,64;UBERON:0000073,4.80e-20,54;UBERON:0001049,1.08e-18,52;UBERON:0005068,1.08e-18,52;UBERON:0006241,1.08e-18,52;UBERON:0007135,1.08e-18,52;UBERON:0003056,6.52e-18,49;UBERON:0000955,1.50e-15,47;UBERON:0006238,1.50e-15,47;UBERON:0002616,4.50e-15,46;UBERON:0002020,7.17e-15,34;UBERON:0003080,1.64e-14,40;UBERON:0002780,3.45e-14,39;UBERON:0001890,3.45e-14,39;UBERON:0006240,3.45e-14,39;UBERON:0010314,7.58e-12,92;UBERON:0003528,8.06e-12,29;UBERON:0002791,8.06e-12,29;UBERON:0001893,8.06e-12,29;UBERON:0011216,8.14e-10,194;UBERON:0000956,1.38e-07,21;UBERON:0001869,1.38e-07,21;UBERON:0000203,1.38e-07,21 | |||
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| |||
|short_description=p1@Eif2c1 | |||
}} |
Revision as of 03:46, 14 September 2013
Short description: | p1@Eif2c1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Eif2c1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000097888_5end |
EntrezGene: | Eif2c1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.28e-19 | 33 |
neuronal stem cell | 1.28e-19 | 33 |
neuroblast | 1.28e-19 | 33 |
electrically signaling cell | 1.28e-19 | 33 |
ectodermal cell | 1.16e-16 | 44 |
neurectodermal cell | 1.16e-16 | 44 |
neural cell | 2.91e-16 | 43 |
CNS neuron (sensu Vertebrata) | 6.51e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.51e-16 | 23 |
electrically responsive cell | 1.24e-14 | 39 |
electrically active cell | 1.24e-14 | 39 |
embryonic cell | 6.00e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.93e-31 | 95 |
ectoderm | 4.93e-31 | 95 |
presumptive ectoderm | 4.93e-31 | 95 |
central nervous system | 4.34e-29 | 73 |
nervous system | 8.55e-28 | 75 |
ecto-epithelium | 6.48e-25 | 73 |
neurectoderm | 7.66e-24 | 64 |
neural plate | 7.66e-24 | 64 |
presumptive neural plate | 7.66e-24 | 64 |
regional part of nervous system | 4.80e-20 | 54 |
neural tube | 1.08e-18 | 52 |
neural rod | 1.08e-18 | 52 |
future spinal cord | 1.08e-18 | 52 |
neural keel | 1.08e-18 | 52 |
pre-chordal neural plate | 6.52e-18 | 49 |
brain | 1.50e-15 | 47 |
future brain | 1.50e-15 | 47 |
regional part of brain | 4.50e-15 | 46 |
gray matter | 7.17e-15 | 34 |
anterior neural tube | 1.64e-14 | 40 |
regional part of forebrain | 3.45e-14 | 39 |
forebrain | 3.45e-14 | 39 |
future forebrain | 3.45e-14 | 39 |
structure with developmental contribution from neural crest | 7.58e-12 | 92 |
brain grey matter | 8.06e-12 | 29 |
regional part of telencephalon | 8.06e-12 | 29 |
telencephalon | 8.06e-12 | 29 |
organ system subdivision | 8.14e-10 | 194 |
cerebral cortex | 1.38e-07 | 21 |
cerebral hemisphere | 1.38e-07 | 21 |
pallium | 1.38e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.