FFCP PHASE1:Mm9::chr13:51888984..51888993,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20354|HGNC=|UniProt=O09126|association_with_transcript=19bp_to_NM_013660,uc007qmo.1,uc007qmp.1_5end|description=CAGE_peak_3_at_Sema4d_5end|id=chr13:51888984..51888993,-|ontology_enrichment_celltype=CL:0000542!1.19e-07!13;CL:0000051!1.19e-07!13;CL:0000838!1.20e-07!12;CL:0000084!1.45e-07!11;CL:0000827!1.45e-07!11|ontology_enrichment_celltype_v019_2=CL:0000084,7.30e-14,11;CL:0000827,7.30e-14,11;CL:0000838,1.56e-12,12;CL:0000542,2.08e-11,13;CL:0000051,2.08e-11,13;CL:0000791,2.03e-10,9;CL:0000789,2.03e-10,9;CL:0002420,2.03e-10,9;CL:0002419,2.03e-10,9;CL:0000790,2.03e-10,9;CL:0000624,4.05e-09,8;CL:0000738,3.02e-08,17;CL:0002087,3.02e-08,17|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!2.72e-17!86;UBERON:0000153!1.08e-15!94;UBERON:0000033!2.43e-10!63;UBERON:0002346!2.00e-08!71;UBERON:0003075!2.00e-08!71;UBERON:0007284!2.00e-08!71;UBERON:0003056!9.86e-08!49;UBERON:0006562!1.35e-07!24;UBERON:0001557!1.35e-07!24;UBERON:0001042!1.35e-07!24;UBERON:0008814!1.35e-07!24;UBERON:0009145!1.35e-07!24;UBERON:0003408!1.56e-07!24;UBERON:0004121!2.01e-07!102;UBERON:0000924!2.01e-07!102;UBERON:0006601!2.01e-07!102;UBERON:0002370!2.64e-07!23;UBERON:0000974!2.64e-07!23;UBERON:0004807!2.64e-07!23;UBERON:0005058!2.64e-07!23;UBERON:0003351!2.64e-07!23;UBERON:0009113!2.64e-07!23;UBERON:0003295!2.64e-07!23;UBERON:0009722!2.64e-07!23;UBERON:0005562!2.64e-07!23;UBERON:0007690!2.64e-07!23;UBERON:0001049!4.50e-07!52;UBERON:0005068!4.50e-07!52;UBERON:0006241!4.50e-07!52;UBERON:0007135!4.50e-07!52|ontology_enrichment_uberon_v019_2=UBERON:0007811,2.52e-12,36;UBERON:0002370,7.92e-11,23;UBERON:0000974,7.92e-11,23;UBERON:0004807,7.92e-11,23;UBERON:0005058,7.92e-11,23;UBERON:0003351,7.92e-11,23;UBERON:0009113,7.92e-11,23;UBERON:0003295,7.92e-11,23;UBERON:0009722,7.92e-11,23;UBERON:0005562,7.92e-11,23;UBERON:0007690,7.92e-11,23;UBERON:0006562,3.02e-10,24;UBERON:0003408,3.02e-10,24;UBERON:0001557,3.02e-10,24;UBERON:0001042,3.02e-10,24;UBERON:0008814,3.02e-10,24;UBERON:0009145,3.02e-10,24;UBERON:0000153,1.40e-09,43;UBERON:0000072,9.11e-09,27;UBERON:0004177,5.90e-08,29;UBERON:0005057,5.90e-08,29;UBERON:0002346,9.81e-08,64;UBERON:0003075,9.81e-08,64;UBERON:0007284,9.81e-08,64;UBERON:0003076,2.77e-07,12;UBERON:0003057,2.77e-07,12;UBERON:0000077,4.52e-07,35;UBERON:0010371,5.37e-07,73|phase1_expression=0.480446541314382,0,0,0,0,0,0,2.84071311571468,2.53419699873,4.91535505276186,0.34243593645101,0.717949430958028,3.25281386869291,1.48614684112296,0.333109761815663,0,0,0.630924330716475,0.411343300817216,0.84877930359606,0.425216450755349,3.77305614563364,1.82839852397255,0.159992422793407,0,0,0.430761996159075,0,0,0,0.221730510655305,0.635030673459631,0,0,0.288851619751275,0,0.204169356262369,0,0,0.523523743973798,0,0.683045484958446,0.971020706062307,0,0,0,0,0,0,0,0.139986421625363,0,0.503347818173209,2.17608642603403,1.34437519656986,0,0,0,0.202316460859598,0,0,0,0,0,0,0.7104801149461,0,0,0.622137673850866,0.135005938331691,0.210324961351382,1.42825492201902,1.54607978666129,0.122490799214954,0,0,0,1.27687338085188,0.46081959976873,0.263772575460388,0.0914876436024097,0,1.95428099300967,1.68828783009504,0.763991238884051,0.294628585473668,0.427115042397309,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0.216491041011214,0,0,0,1.29468941823586,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0.662524555381181,0.484875253135222,0,2.34224637609238,1.67557365450764,0.510914110417183,1.07833612055328,0,0.254140454146129,1.3481157546434,1.37250180845588,0,0.869121600961382,1.02286182932132,2.0778804455956,2.10913641988085,0.101839363850316,0.497627882440372,0,0.631325567659422,0.260240885925407,1.37941262660084,0.900310649026746,1.80845781402858,2.58538696775046,1.40925092313335,1.12442069471675,0.776110112217047,0.215567992932842,0,0.351902248327898,0,0,0,0.411564272815887,0.199034266818493,0,0,0.284163499395593,0.207125772535502,0.234526059981096,0.36012412292203,0,0.196764231747404,0,0.232533944750408,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.486412857275134,0.584799949701329,0.219550115291051,0.134206418760372,0.841159794256509,0.411618449517138,0.991256348951394,0.264450566663544,0.426576501070468,0,0,0,0.667134131534611,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0,0,0.216138049874694,0.398282546508734,0.189667900953082,0.342745537829186,0,0.203651327845314,0.193952487167626,0.631222379012867,0.885311519739602,0.442830443938806,1.09899109488962,1.1105744752962,0.296452627087149,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.369506380333209,0,0.325929952884052,0,0.234690248288502,0.335012514883631,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0.172684981865896,0.289298117163023,0,0,0.491764273019036,1.65562047782839,2.24770825982909,2.57865710502847,0,0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| ||
|EntrezGene=20354 | |||
|HGNC= | |||
|UniProt=O09126 | |||
|association_with_transcript=19bp_to_NM_013660,uc007qmo.1,uc007qmp.1_5end | |||
|description=CAGE_peak_3_at_Sema4d_5end | |||
|id=chr13:51888984..51888993,- | |||
|ontology_enrichment_celltype=CL:0000542!1.19e-07!13;CL:0000051!1.19e-07!13;CL:0000838!1.20e-07!12;CL:0000084!1.45e-07!11;CL:0000827!1.45e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,7.30e-14,11;CL:0000827,7.30e-14,11;CL:0000838,1.56e-12,12;CL:0000542,2.08e-11,13;CL:0000051,2.08e-11,13;CL:0000791,2.03e-10,9;CL:0000789,2.03e-10,9;CL:0002420,2.03e-10,9;CL:0002419,2.03e-10,9;CL:0000790,2.03e-10,9;CL:0000624,4.05e-09,8;CL:0000738,3.02e-08,17;CL:0002087,3.02e-08,17 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!2.72e-17!86;UBERON:0000153!1.08e-15!94;UBERON:0000033!2.43e-10!63;UBERON:0002346!2.00e-08!71;UBERON:0003075!2.00e-08!71;UBERON:0007284!2.00e-08!71;UBERON:0003056!9.86e-08!49;UBERON:0006562!1.35e-07!24;UBERON:0001557!1.35e-07!24;UBERON:0001042!1.35e-07!24;UBERON:0008814!1.35e-07!24;UBERON:0009145!1.35e-07!24;UBERON:0003408!1.56e-07!24;UBERON:0004121!2.01e-07!102;UBERON:0000924!2.01e-07!102;UBERON:0006601!2.01e-07!102;UBERON:0002370!2.64e-07!23;UBERON:0000974!2.64e-07!23;UBERON:0004807!2.64e-07!23;UBERON:0005058!2.64e-07!23;UBERON:0003351!2.64e-07!23;UBERON:0009113!2.64e-07!23;UBERON:0003295!2.64e-07!23;UBERON:0009722!2.64e-07!23;UBERON:0005562!2.64e-07!23;UBERON:0007690!2.64e-07!23;UBERON:0001049!4.50e-07!52;UBERON:0005068!4.50e-07!52;UBERON:0006241!4.50e-07!52;UBERON:0007135!4.50e-07!52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007811,2.52e-12,36;UBERON:0002370,7.92e-11,23;UBERON:0000974,7.92e-11,23;UBERON:0004807,7.92e-11,23;UBERON:0005058,7.92e-11,23;UBERON:0003351,7.92e-11,23;UBERON:0009113,7.92e-11,23;UBERON:0003295,7.92e-11,23;UBERON:0009722,7.92e-11,23;UBERON:0005562,7.92e-11,23;UBERON:0007690,7.92e-11,23;UBERON:0006562,3.02e-10,24;UBERON:0003408,3.02e-10,24;UBERON:0001557,3.02e-10,24;UBERON:0001042,3.02e-10,24;UBERON:0008814,3.02e-10,24;UBERON:0009145,3.02e-10,24;UBERON:0000153,1.40e-09,43;UBERON:0000072,9.11e-09,27;UBERON:0004177,5.90e-08,29;UBERON:0005057,5.90e-08,29;UBERON:0002346,9.81e-08,64;UBERON:0003075,9.81e-08,64;UBERON:0007284,9.81e-08,64;UBERON:0003076,2.77e-07,12;UBERON:0003057,2.77e-07,12;UBERON:0000077,4.52e-07,35;UBERON:0010371,5.37e-07,73 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,2.84071311571468,2.53419699873,4.91535505276186,0.34243593645101,0.717949430958028,3.25281386869291,1.48614684112296,0.333109761815663,0,0,0.630924330716475,0.411343300817216,0.84877930359606,0.425216450755349,3.77305614563364,1.82839852397255,0.159992422793407,0,0,0.430761996159075,0,0,0,0.221730510655305,0.635030673459631,0,0,0.288851619751275,0,0.204169356262369,0,0,0.523523743973798,0,0.683045484958446,0.971020706062307,0,0,0,0,0,0,0,0.139986421625363,0,0.503347818173209,2.17608642603403,1.34437519656986,0,0,0,0.202316460859598,0,0,0,0,0,0,0.7104801149461,0,0,0.622137673850866,0.135005938331691,0.210324961351382,1.42825492201902,1.54607978666129,0.122490799214954,0,0,0,1.27687338085188,0.46081959976873,0.263772575460388,0.0914876436024097,0,1.95428099300967,1.68828783009504,0.763991238884051,0.294628585473668,0.427115042397309,0.186399445825301,0,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0.216491041011214,0,0,0,1.29468941823586,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0.662524555381181,0.484875253135222,0,2.34224637609238,1.67557365450764,0.510914110417183,1.07833612055328,0,0.254140454146129,1.3481157546434,1.37250180845588,0,0.869121600961382,1.02286182932132,2.0778804455956,2.10913641988085,0.101839363850316,0.497627882440372,0,0.631325567659422,0.260240885925407,1.37941262660084,0.900310649026746,1.80845781402858,2.58538696775046,1.40925092313335,1.12442069471675,0.776110112217047,0.215567992932842,0,0.351902248327898,0,0,0,0.411564272815887,0.199034266818493,0,0,0.284163499395593,0.207125772535502,0.234526059981096,0.36012412292203,0,0.196764231747404,0,0.232533944750408,0.268273401399619,0.233530684734339,0.329119699826961,0.164167464079095,0.486412857275134,0.584799949701329,0.219550115291051,0.134206418760372,0.841159794256509,0.411618449517138,0.991256348951394,0.264450566663544,0.426576501070468,0,0,0,0.667134131534611,0,0.474529061544512,0.164698954724011,0.251335208800269,0,0,0,0.216138049874694,0.398282546508734,0.189667900953082,0.342745537829186,0,0.203651327845314,0.193952487167626,0.631222379012867,0.885311519739602,0.442830443938806,1.09899109488962,1.1105744752962,0.296452627087149,0.166845105716094,0,0,0,0,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0.369506380333209,0,0.325929952884052,0,0.234690248288502,0.335012514883631,0,0.195133647857799,0.157635144106191,0,0.159454768657487,0,0.172684981865896,0.289298117163023,0,0,0.491764273019036,1.65562047782839,2.24770825982909,2.57865710502847,0,0.504941854408746,0.315508219416257,0,0.646270193198397,0,0,0.283076530788832,0,0.584511715822624,0.790575555893047,1.60660658210904,0.141940085208269,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,0.340439605753788,0.36012218806262,0.258717367565509,0.428674070063185,0.177340233642274,0.891844088010353,0.164549020602121,0.304464949114599,0.704015124191131,0.63549621259146,0,0.32977250588296,0.322928853391811,0.180938774784468,0.358117032009409,0.328281799490123,0,2.22510362412612,0.683483523191411,0.206386867963223,0,0,0.410082683163076,0,1.35982743995084,0.979660166265606,0.967399816630967,0,0.158167996790568,0,0,0.627264888043406,0,0.134864346384821,0.0826534557253359,0,0.259229946583586,0.621339313086926,0,0,0,0.194451188344048,0.129159823477731,0,0,0.13020438484395,0.419437377702843,0.241584120826006,0,1.26404448251271,0.608175645870493,1.23253148597793,1.03936658382236,1.07416017400489,0.39736270956253,0.600977247599844,1.9199638532695,1.71642964911851,1.82896335972,0.907435666231565,0.487289403698762,1.44317762460494,1.75315353272353,0.680191150845634,0,0,0,0,1.50145980360946,0,1.07184189539533,0,1.12950368523413,1.38097570952153,1.14579102687879,0.515559547031063,0.685082519770642,0.755393897389701,0.675022500231806,0.45032120322422,0.906284817968409,0.51776031175182,0,0,0,0.243106717068294,0,0,0.666740183404846,0,0.962757628775446,0,0,0.377252682772152,0.187283014939765,0.256100609619477,0.229741875822453,0.476293691283074,0.463537303779422,0,0,0.147198920134397,0.685738504770831,0.177475806159338,0.238436189947321,0,0,0.423073039458382,0.182927972872773,0.789209134313529,0.135804113845862,0,0.237270036248348,0.0985044823755635,0,0,0.578719832943424,0,0.233931608445408,0.214871054048298,0.191288332068843,0.661774257358546,1.62307484934295 | |||
|short_description=p3@Sema4d | |||
}} |
Revision as of 00:44, 13 September 2013
Short description: | p3@Sema4d |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sema4d_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_NM_013660, uc007qmo.1, uc007qmp.1_5end |
EntrezGene: | Sema4d |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 7.30e-14 | 11 |
pro-T cell | 7.30e-14 | 11 |
lymphoid lineage restricted progenitor cell | 1.56e-12 | 12 |
lymphocyte | 2.08e-11 | 13 |
common lymphoid progenitor | 2.08e-11 | 13 |
mature alpha-beta T cell | 2.03e-10 | 9 |
alpha-beta T cell | 2.03e-10 | 9 |
immature T cell | 2.03e-10 | 9 |
mature T cell | 2.03e-10 | 9 |
immature alpha-beta T cell | 2.03e-10 | 9 |
CD4-positive, alpha-beta T cell | 4.05e-09 | 8 |
leukocyte | 3.02e-08 | 17 |
nongranular leukocyte | 3.02e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
craniocervical region | 2.52e-12 | 36 |
thymus | 7.92e-11 | 23 |
neck | 7.92e-11 | 23 |
respiratory system epithelium | 7.92e-11 | 23 |
hemolymphoid system gland | 7.92e-11 | 23 |
pharyngeal epithelium | 7.92e-11 | 23 |
thymic region | 7.92e-11 | 23 |
pharyngeal gland | 7.92e-11 | 23 |
entire pharyngeal arch endoderm | 7.92e-11 | 23 |
thymus primordium | 7.92e-11 | 23 |
early pharyngeal endoderm | 7.92e-11 | 23 |
pharynx | 3.02e-10 | 24 |
gland of gut | 3.02e-10 | 24 |
upper respiratory tract | 3.02e-10 | 24 |
chordate pharynx | 3.02e-10 | 24 |
pharyngeal arch system | 3.02e-10 | 24 |
pharyngeal region of foregut | 3.02e-10 | 24 |
anterior region of body | 1.40e-09 | 43 |
segment of respiratory tract | 9.11e-09 | 27 |
hemopoietic organ | 5.90e-08 | 29 |
immune organ | 5.90e-08 | 29 |
neurectoderm | 9.81e-08 | 64 |
neural plate | 9.81e-08 | 64 |
presumptive neural plate | 9.81e-08 | 64 |
posterior neural tube | 2.77e-07 | 12 |
chordal neural plate | 2.77e-07 | 12 |
mixed endoderm/mesoderm-derived structure | 4.52e-07 | 35 |
ecto-epithelium | 5.37e-07 | 73 |
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