FFCP PHASE1:Mm9::chr9:44529372..44529424,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=102693|HGNC=|UniProt=D3YVB9|association_with_transcript=45bp_to_ENSMUST00000148929_5end|description=CAGE_peak_4_at_Phldb1_5end|id=chr9:44529372..44529424,-|ontology_enrichment_celltype=CL:0000221!2.11e-07!44;CL:0000133!2.11e-07!44;CL:0002319!2.81e-07!43;CL:0000055!4.47e-07!50|ontology_enrichment_celltype_v019_2=CL:0002453,3.09e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.01e-13!102;UBERON:0000924!1.01e-13!102;UBERON:0006601!1.01e-13!102;UBERON:0001017!2.01e-12!73;UBERON:0005743!2.01e-12!73;UBERON:0000073!5.58e-12!75;UBERON:0001016!5.58e-12!75;UBERON:0004535!1.15e-07!23;UBERON:0001009!1.15e-07!23;UBERON:0000955!1.39e-07!50;UBERON:0006238!1.39e-07!50;UBERON:0000025!1.48e-07!114;UBERON:0004111!2.05e-07!122;UBERON:0002346!2.62e-07!71;UBERON:0003075!2.62e-07!71;UBERON:0007284!2.62e-07!71;UBERON:0002616!3.45e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.83e-11,73;UBERON:0004121,1.36e-10,95;UBERON:0000924,1.36e-10,95;UBERON:0006601,1.36e-10,95;UBERON:0001016,4.94e-10,75;UBERON:0010314,2.27e-09,92;UBERON:0004535,1.84e-08,23;UBERON:0001009,1.84e-08,23|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.503637815735669,0,0,2.39340827657833,4.68129052643987,0.34243593645101,0.0797721589953364,0,0,0,0,0,0,0,0,1.27564935226605,0.297872853602656,0,0.47997726838022,0.22940928106717,0,0,0,0,0,0,0,1.23012957516914,0,0.577703239502549,0.332469290716985,1.02084678131185,0,0,0,0,0,0,1.25896817975577,1.01376931219515,3.12029478674859,3.12956537739216,11.9913836009246,9.22681967484782,9.13820525649132,6.01941612989059,8.62515386189829,0,0,0,0.514518872071894,0.286533439938757,2.57836046138721,0.809265843438391,1.5869729378161,1.26766280701236,3.72728985276045,7.11435836888911,0,0,0,10.7856039786626,19.9793518767208,1.03689612308478,0.540023753326763,0.630974884054146,0.856952953211411,0.662605622854841,1.34739879136449,0.575072826109418,0,3.30347642998166,3.95830748064082,4.30098293117482,0.791317726381163,0.914876436024097,0,5.02529398202486,4.50210088025344,3.81995619442025,1.47314292736834,0.996601765593721,0.559198337475902,0.37863096666592,0.755715601067855,2.02905142091174,0,0,0,0.649776417447669,0.896053774194671,0.561777680527007,0.681721290312231,0,0.70667914902068,1.12674735821344,0,2.54805239706646,0,0.216491041011214,0,0.505524445014783,0.5709193985953,0,1.1875371125186,1.21439728736295,1.21786191324856,0.922461989024234,1.05505848386836,0.823120949949934,1.25666591329675,0.247194967734374,5.20557684911682,1.76922110389975,1.61766849947409,0.220841518460394,0.484875253135222,0,2.34224637609238,4.1889341362691,0,0.479260498023681,0,0.508280908292259,4.34392854273986,8.6925114535539,1.38219787324151,1.91206752211504,1.02286182932132,7.89594569326328,4.54275536589721,0.509196819251581,0.870848794270651,0.252722758433675,0.210441855886474,0.910843100738926,0.689706313300419,0.720248519221397,1.20563854268572,1.2246569847239,0.768682321709099,1.03071897015702,0.258703370739016,3.23351989399263,0.756424320671277,0.879755620819744,1.31517439456545,0.834141747676794,1.39300866608867,0.61734640922383,0.398068533636986,0,0.51469581422943,0,0.828503090142008,0.938104239924385,1.2604344302271,1.65721314909647,1.57411385397923,2.46827380619805,1.62773761325285,2.68273401399619,3.38619492864792,3.62031669809657,5.08919138645195,9.1607754786817,13.5965988305559,8.78200461164202,9.39444931322602,5.04695876553905,0.720332286654991,0,0,1.49301775374664,0.928946687441754,0.128867461322093,0.605050573870028,0.22237804384487,0,0,0,1.00534083520108,0.397912944082302,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.799739588268102,1.1270773567308,0.203651327845314,0.581857461502877,0.49095073923223,0.569128834118316,1.32849133181642,0.627994911365499,0.863780147452604,0,0.500535317148282,0.393117990226406,0.674586337154561,0.811440485554012,0,0.25462585178142,0,0.648540907100142,0.274561413188081,2.87536413054709,0.372140947668503,3.74445207737473,0.757736633841335,0.717589654087649,2.8946611281802,0.369506380333209,1.51593129416388,0.977789858652155,0.848725428875941,0.938760993154008,1.34005005953453,0.714130922658041,0.780534591431195,0.788175720530955,0.664394068946325,0.797273843287435,0.163863314715738,0.345369963731791,0.433947175744535,0,0,1.47529281905711,0.551873492609465,7.38532713943843,7.03270119553219,0.163934945376675,1.00988370881749,2.2085575359138,0.780877488593277,3.01592756825919,1.67278158566786,2.45078541490634,0.849229592366497,1.21443210502468,2.04579100537918,3.55759000151871,3.53453448063988,1.27746076687442,0.534196811001766,0.81443479676788,0.164970122972535,3.98235415019888,1.94224508923985,0.302323556964751,0.565815239267694,0.885905678642318,1.22974059177571,1.03371317267288,0.363533729477506,0.712994756769443,1.58018378967908,0,0,0.340439605753788,1.26042765821917,0.905510786479282,1.07168517515796,1.24138163549592,0.891844088010353,0.822745103010605,1.2178597964584,3.28540391289194,0.423664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| ||
|EntrezGene=102693 | |||
|HGNC= | |||
|UniProt=D3YVB9 | |||
|association_with_transcript=45bp_to_ENSMUST00000148929_5end | |||
|description=CAGE_peak_4_at_Phldb1_5end | |||
|id=chr9:44529372..44529424,- | |||
|ontology_enrichment_celltype=CL:0000221!2.11e-07!44;CL:0000133!2.11e-07!44;CL:0002319!2.81e-07!43;CL:0000055!4.47e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,3.09e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.01e-13!102;UBERON:0000924!1.01e-13!102;UBERON:0006601!1.01e-13!102;UBERON:0001017!2.01e-12!73;UBERON:0005743!2.01e-12!73;UBERON:0000073!5.58e-12!75;UBERON:0001016!5.58e-12!75;UBERON:0004535!1.15e-07!23;UBERON:0001009!1.15e-07!23;UBERON:0000955!1.39e-07!50;UBERON:0006238!1.39e-07!50;UBERON:0000025!1.48e-07!114;UBERON:0004111!2.05e-07!122;UBERON:0002346!2.62e-07!71;UBERON:0003075!2.62e-07!71;UBERON:0007284!2.62e-07!71;UBERON:0002616!3.45e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.83e-11,73;UBERON:0004121,1.36e-10,95;UBERON:0000924,1.36e-10,95;UBERON:0006601,1.36e-10,95;UBERON:0001016,4.94e-10,75;UBERON:0010314,2.27e-09,92;UBERON:0004535,1.84e-08,23;UBERON:0001009,1.84e-08,23 | |||
|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.503637815735669,0,0,2.39340827657833,4.68129052643987,0.34243593645101,0.0797721589953364,0,0,0,0,0,0,0,0,1.27564935226605,0.297872853602656,0,0.47997726838022,0.22940928106717,0,0,0,0,0,0,0,1.23012957516914,0,0.577703239502549,0.332469290716985,1.02084678131185,0,0,0,0,0,0,1.25896817975577,1.01376931219515,3.12029478674859,3.12956537739216,11.9913836009246,9.22681967484782,9.13820525649132,6.01941612989059,8.62515386189829,0,0,0,0.514518872071894,0.286533439938757,2.57836046138721,0.809265843438391,1.5869729378161,1.26766280701236,3.72728985276045,7.11435836888911,0,0,0,10.7856039786626,19.9793518767208,1.03689612308478,0.540023753326763,0.630974884054146,0.856952953211411,0.662605622854841,1.34739879136449,0.575072826109418,0,3.30347642998166,3.95830748064082,4.30098293117482,0.791317726381163,0.914876436024097,0,5.02529398202486,4.50210088025344,3.81995619442025,1.47314292736834,0.996601765593721,0.559198337475902,0.37863096666592,0.755715601067855,2.02905142091174,0,0,0,0.649776417447669,0.896053774194671,0.561777680527007,0.681721290312231,0,0.70667914902068,1.12674735821344,0,2.54805239706646,0,0.216491041011214,0,0.505524445014783,0.5709193985953,0,1.1875371125186,1.21439728736295,1.21786191324856,0.922461989024234,1.05505848386836,0.823120949949934,1.25666591329675,0.247194967734374,5.20557684911682,1.76922110389975,1.61766849947409,0.220841518460394,0.484875253135222,0,2.34224637609238,4.1889341362691,0,0.479260498023681,0,0.508280908292259,4.34392854273986,8.6925114535539,1.38219787324151,1.91206752211504,1.02286182932132,7.89594569326328,4.54275536589721,0.509196819251581,0.870848794270651,0.252722758433675,0.210441855886474,0.910843100738926,0.689706313300419,0.720248519221397,1.20563854268572,1.2246569847239,0.768682321709099,1.03071897015702,0.258703370739016,3.23351989399263,0.756424320671277,0.879755620819744,1.31517439456545,0.834141747676794,1.39300866608867,0.61734640922383,0.398068533636986,0,0.51469581422943,0,0.828503090142008,0.938104239924385,1.2604344302271,1.65721314909647,1.57411385397923,2.46827380619805,1.62773761325285,2.68273401399619,3.38619492864792,3.62031669809657,5.08919138645195,9.1607754786817,13.5965988305559,8.78200461164202,9.39444931322602,5.04695876553905,0.720332286654991,0,0,1.49301775374664,0.928946687441754,0.128867461322093,0.605050573870028,0.22237804384487,0,0,0,1.00534083520108,0.397912944082302,0.38992817423824,0,0,0.199141273254367,0.189667900953082,0.799739588268102,1.1270773567308,0.203651327845314,0.581857461502877,0.49095073923223,0.569128834118316,1.32849133181642,0.627994911365499,0.863780147452604,0,0.500535317148282,0.393117990226406,0.674586337154561,0.811440485554012,0,0.25462585178142,0,0.648540907100142,0.274561413188081,2.87536413054709,0.372140947668503,3.74445207737473,0.757736633841335,0.717589654087649,2.8946611281802,0.369506380333209,1.51593129416388,0.977789858652155,0.848725428875941,0.938760993154008,1.34005005953453,0.714130922658041,0.780534591431195,0.788175720530955,0.664394068946325,0.797273843287435,0.163863314715738,0.345369963731791,0.433947175744535,0,0,1.47529281905711,0.551873492609465,7.38532713943843,7.03270119553219,0.163934945376675,1.00988370881749,2.2085575359138,0.780877488593277,3.01592756825919,1.67278158566786,2.45078541490634,0.849229592366497,1.21443210502468,2.04579100537918,3.55759000151871,3.53453448063988,1.27746076687442,0.534196811001766,0.81443479676788,0.164970122972535,3.98235415019888,1.94224508923985,0.302323556964751,0.565815239267694,0.885905678642318,1.22974059177571,1.03371317267288,0.363533729477506,0.712994756769443,1.58018378967908,0,0,0.340439605753788,1.26042765821917,0.905510786479282,1.07168517515796,1.24138163549592,0.891844088010353,0.822745103010605,1.2178597964584,3.28540391289194,0.42366414172764,0.882113592219848,1.97863503529776,1.93757312035087,1.99032652262914,1.79058516004705,1.80554989719567,0.582961673259701,9.6421157045465,0.170870880797853,1.03193433981611,0.370389054739423,0,0,0,1.5298058699447,0.979660166265606,1.24379976423981,0.954670618015114,2.68885594543965,1.01659733563424,0.432021363287205,0,1.31017538247707,1.07891477107857,1.07449492442937,1.57053565190418,0.129614973291793,0,0,0.897099276263873,1.32366792365678,0.194451188344048,0.645799117388655,0.168956125490778,0.469428954583016,0.781226309063701,0.209718688851422,0,0,0,0.608175645870493,0.308132871494482,0,0.179026695667481,0.596044064343795,0.240390899039938,0,0.100966449948148,0.0762068066549998,0.100826185136841,0,0,0,2.26730383615211,0,0.986852422704233,1.34307693091263,0.579568782096571,0.375364950902364,0.36630324853453,0.214368379079066,3.00943262421218,0,0.460325236507177,0.572895513439397,0.343706364687375,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0.906284817968409,1.03552062350364,0.830298780673413,1.59609949360412,1.53660245178721,1.94485373654635,0,0.919217542250071,1.33348036680969,0.618105171716683,1.6045960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| |||
|short_description=p4@Phldb1 | |||
}} | |||
Revision as of 17:57, 14 September 2013
| Short description: | p4@Phldb1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Phldb1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 45bp_to_ENSMUST00000148929_5end |
| EntrezGene: | Phldb1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| oligodendrocyte precursor cell | 3.09e-08 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 9.83e-11 | 73 |
| ectoderm-derived structure | 1.36e-10 | 95 |
| ectoderm | 1.36e-10 | 95 |
| presumptive ectoderm | 1.36e-10 | 95 |
| nervous system | 4.94e-10 | 75 |
| structure with developmental contribution from neural crest | 2.27e-09 | 92 |
| cardiovascular system | 1.84e-08 | 23 |
| circulatory system | 1.84e-08 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
