FFCP PHASE1:Mm9::chr6:78417539..78417569,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78417539..78417569,-|id=chr6:78417539..78417569,-|ontology_enrichment_celltype=CL:0000239!9.21e-14!6;CL:0000677!9.21e-14!6;CL:0000212!9.21e-14!6;CL:0000584!9.21e-14!6;CL:0000075!1.11e-11!7;CL:0002563!1.25e-11!9;CL:0002251!1.25e-11!9;CL:0000066!7.34e-11!25;CL:0002076!1.14e-10!15;CL:0000473!3.13e-08!3;CL:0000627!3.13e-08!3;CL:0000682!3.13e-08!3;CL:0000223!1.45e-07!20|ontology_enrichment_celltype_v019_2=CL:0000239,2.17e-24,6;CL:0000677,2.17e-24,6;CL:0000584,2.17e-24,6;CL:0000075,7.42e-21,7;CL:0002563,3.90e-16,9;CL:0002251,3.90e-16,9;CL:0000682,4.91e-14,3;CL:0000066,1.75e-12,25;CL:0002076,1.67e-09,15;CL:0000223,5.23e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.64e-24!15;UBERON:0001242!5.68e-20!13;UBERON:0000060!5.68e-20!13;UBERON:0001262!5.68e-20!13;UBERON:0004786!5.68e-20!13;UBERON:0000160!3.69e-15!43;UBERON:0004923!7.66e-14!24;UBERON:0003350!1.25e-11!9;UBERON:0004808!1.25e-11!9;UBERON:0001277!1.25e-11!9;UBERON:0001007!1.29e-10!128;UBERON:0001555!1.29e-10!128;UBERON:0007026!1.29e-10!128;UBERON:0004119!2.45e-10!130;UBERON:0000925!2.45e-10!130;UBERON:0006595!2.45e-10!130;UBERON:0005409!9.00e-10!59;UBERON:0000485!2.61e-09!11;UBERON:0004921!6.06e-09!126;UBERON:0004185!6.06e-09!126;UBERON:0000331!2.81e-08!3;UBERON:0002116!2.81e-08!3;UBERON:0001204!2.81e-08!3;UBERON:0001168!2.81e-08!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.22e-38,15;UBERON:0001242,3.93e-31,13;UBERON:0001262,3.93e-31,13;UBERON:0004786,3.93e-31,13;UBERON:0000160,1.56e-28,31;UBERON:0004923,1.91e-23,24;UBERON:0005409,5.55e-18,47;UBERON:0003350,3.90e-16,9;UBERON:0004808,3.90e-16,9;UBERON:0001277,3.90e-16,9;UBERON:0000331,4.02e-14,3;UBERON:0002116,4.02e-14,3;UBERON:0001204,4.02e-14,3;UBERON:0001168,4.02e-14,3;UBERON:0000485,3.99e-13,11;UBERON:0002108,1.03e-10,4;UBERON:0001962,2.67e-09,2;UBERON:0001961,2.67e-09,2;UBERON:0001744,2.67e-09,2;UBERON:0001007,7.91e-08,116;UBERON:0001555,7.91e-08,116;UBERON:0007026,7.91e-08,116;UBERON:0004119,1.20e-07,118;UBERON:0000925,1.20e-07,118;UBERON:0006595,1.20e-07,118|phase1_expression=0,17.0997949743287,23.6599604482559,1.20985684522732,8.01433167914156,4.70061961353291,7.70921713965235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15961356246374,11.9292826154928,26.988902313406,18.5227658348402,21.7625945012748,27.5533958211742,10.3332353201572,64.9670396220043,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0.649473123033642,0,0.505524445014783,2.96878087269556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.2247638031475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8950761874167,27.2384083663451,0,0,0,0,0,0,16.6085171540579,0,0.251335208800269,0,0,12.5834717211591,4.53889904736858,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.491589944147214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0.201932899896295,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr6:78417539..78417569,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78417539..78417569,- | |||
|id=chr6:78417539..78417569,- | |||
|ontology_enrichment_celltype=CL:0000239!9.21e-14!6;CL:0000677!9.21e-14!6;CL:0000212!9.21e-14!6;CL:0000584!9.21e-14!6;CL:0000075!1.11e-11!7;CL:0002563!1.25e-11!9;CL:0002251!1.25e-11!9;CL:0000066!7.34e-11!25;CL:0002076!1.14e-10!15;CL:0000473!3.13e-08!3;CL:0000627!3.13e-08!3;CL:0000682!3.13e-08!3;CL:0000223!1.45e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.17e-24,6;CL:0000677,2.17e-24,6;CL:0000584,2.17e-24,6;CL:0000075,7.42e-21,7;CL:0002563,3.90e-16,9;CL:0002251,3.90e-16,9;CL:0000682,4.91e-14,3;CL:0000066,1.75e-12,25;CL:0002076,1.67e-09,15;CL:0000223,5.23e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.64e-24!15;UBERON:0001242!5.68e-20!13;UBERON:0000060!5.68e-20!13;UBERON:0001262!5.68e-20!13;UBERON:0004786!5.68e-20!13;UBERON:0000160!3.69e-15!43;UBERON:0004923!7.66e-14!24;UBERON:0003350!1.25e-11!9;UBERON:0004808!1.25e-11!9;UBERON:0001277!1.25e-11!9;UBERON:0001007!1.29e-10!128;UBERON:0001555!1.29e-10!128;UBERON:0007026!1.29e-10!128;UBERON:0004119!2.45e-10!130;UBERON:0000925!2.45e-10!130;UBERON:0006595!2.45e-10!130;UBERON:0005409!9.00e-10!59;UBERON:0000485!2.61e-09!11;UBERON:0004921!6.06e-09!126;UBERON:0004185!6.06e-09!126;UBERON:0000331!2.81e-08!3;UBERON:0002116!2.81e-08!3;UBERON:0001204!2.81e-08!3;UBERON:0001168!2.81e-08!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.22e-38,15;UBERON:0001242,3.93e-31,13;UBERON:0001262,3.93e-31,13;UBERON:0004786,3.93e-31,13;UBERON:0000160,1.56e-28,31;UBERON:0004923,1.91e-23,24;UBERON:0005409,5.55e-18,47;UBERON:0003350,3.90e-16,9;UBERON:0004808,3.90e-16,9;UBERON:0001277,3.90e-16,9;UBERON:0000331,4.02e-14,3;UBERON:0002116,4.02e-14,3;UBERON:0001204,4.02e-14,3;UBERON:0001168,4.02e-14,3;UBERON:0000485,3.99e-13,11;UBERON:0002108,1.03e-10,4;UBERON:0001962,2.67e-09,2;UBERON:0001961,2.67e-09,2;UBERON:0001744,2.67e-09,2;UBERON:0001007,7.91e-08,116;UBERON:0001555,7.91e-08,116;UBERON:0007026,7.91e-08,116;UBERON:0004119,1.20e-07,118;UBERON:0000925,1.20e-07,118;UBERON:0006595,1.20e-07,118 | |||
|phase1_expression=0,17.0997949743287,23.6599604482559,1.20985684522732,8.01433167914156,4.70061961353291,7.70921713965235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.15961356246374,11.9292826154928,26.988902313406,18.5227658348402,21.7625945012748,27.5533958211742,10.3332353201572,64.9670396220043,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0.649473123033642,0,0.505524445014783,2.96878087269556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.2247638031475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8950761874167,27.2384083663451,0,0,0,0,0,0,16.6085171540579,0,0.251335208800269,0,0,12.5834717211591,4.53889904736858,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0,0,0.167506257441816,0,0,0,0.221464689648775,0.159454768657487,0.491589944147214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198681354781265,0,0,0.201932899896295,0,0.100826185136841,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0,0,0,0,0,0.412085900803307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr6:78417539..78417569,- | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p@chr6:78417539..78417569, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78417539..78417569, - |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.17e-24 | 6 |
gut absorptive cell | 2.17e-24 | 6 |
enterocyte | 2.17e-24 | 6 |
columnar/cuboidal epithelial cell | 7.42e-21 | 7 |
intestinal epithelial cell | 3.90e-16 | 9 |
epithelial cell of alimentary canal | 3.90e-16 | 9 |
M cell of gut | 4.91e-14 | 3 |
epithelial cell | 1.75e-12 | 25 |
endo-epithelial cell | 1.67e-09 | 15 |
endodermal cell | 5.23e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.22e-38 | 15 |
intestinal mucosa | 3.93e-31 | 13 |
wall of intestine | 3.93e-31 | 13 |
gastrointestinal system mucosa | 3.93e-31 | 13 |
intestine | 1.56e-28 | 31 |
organ component layer | 1.91e-23 | 24 |
gastrointestinal system | 5.55e-18 | 47 |
epithelium of mucosa | 3.90e-16 | 9 |
gastrointestinal system epithelium | 3.90e-16 | 9 |
intestinal epithelium | 3.90e-16 | 9 |
ileal mucosa | 4.02e-14 | 3 |
ileum | 4.02e-14 | 3 |
mucosa of small intestine | 4.02e-14 | 3 |
wall of small intestine | 4.02e-14 | 3 |
simple columnar epithelium | 3.99e-13 | 11 |
small intestine | 1.03e-10 | 4 |
gut-associated lymphoid tissue | 2.67e-09 | 2 |
mucosa-associated lymphoid tissue | 2.67e-09 | 2 |
lymphoid tissue | 2.67e-09 | 2 |
digestive system | 7.91e-08 | 116 |
digestive tract | 7.91e-08 | 116 |
primitive gut | 7.91e-08 | 116 |
endoderm-derived structure | 1.20e-07 | 118 |
endoderm | 1.20e-07 | 118 |
presumptive endoderm | 1.20e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.