FFCP PHASE1:Mm9::chr2:164860270..164860320,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=228869|HGNC=|MCL_coexpression_id=108|UniProt=B7ZC23,B7ZC24,Q91W39|association_with_transcript=0bp_to_ENSMUST00000121377,ENSMUST00000122070,ENSMUST00000127545,ENSMUST00000141663,NM_144892,uc008nwv.1,uc008nww.1_5end|description=CAGE_peak_1_at_Ncoa5_5end|id=chr2:164860270..164860320,-|ontology_enrichment_celltype=CL:0000540!4.32e-13!33;CL:0000047!4.32e-13!33;CL:0000031!4.32e-13!33;CL:0000404!4.32e-13!33;CL:0002319!1.37e-10!43;CL:0000221!6.17e-10!44;CL:0000133!6.17e-10!44;CL:0000117!6.28e-10!23;CL:0000337!6.28e-10!23;CL:0000393!8.88e-09!39;CL:0000211!8.88e-09!39;CL:0000055!3.26e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,4.32e-13,33;CL:0000047,4.32e-13,33;CL:0000031,4.32e-13,33;CL:0000404,4.32e-13,33;CL:0002319,1.37e-10,43;CL:0000221,6.17e-10,44;CL:0000133,6.17e-10,44;CL:0000117,6.28e-10,23;CL:0000337,6.28e-10,23;CL:0000393,8.88e-09,39;CL:0000211,8.88e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!6.18e-23!94;UBERON:0001017!8.00e-21!73;UBERON:0005743!8.00e-21!73;UBERON:0007811!6.03e-20!86;UBERON:0000073!6.79e-19!75;UBERON:0001016!6.79e-19!75;UBERON:0004121!5.10e-15!102;UBERON:0000924!5.10e-15!102;UBERON:0006601!5.10e-15!102;UBERON:0003056!2.20e-14!49;UBERON:0000033!3.13e-14!63;UBERON:0002346!3.25e-14!71;UBERON:0003075!3.25e-14!71;UBERON:0007284!3.25e-14!71;UBERON:0001049!2.16e-13!52;UBERON:0005068!2.16e-13!52;UBERON:0006241!2.16e-13!52;UBERON:0007135!2.16e-13!52;UBERON:0000955!6.50e-13!50;UBERON:0006238!6.50e-13!50;UBERON:0002616!2.08e-12!49;UBERON:0002780!6.76e-12!39;UBERON:0001890!6.76e-12!39;UBERON:0006240!6.76e-12!39;UBERON:0003080!1.28e-11!40;UBERON:0002020!1.38e-11!34;UBERON:0002791!7.85e-10!29;UBERON:0003528!7.85e-10!29;UBERON:0001893!7.85e-10!29;UBERON:0000956!7.17e-08!21;UBERON:0001869!7.17e-08!21;UBERON:0000203!7.17e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.00e-21,73;UBERON:0001016,6.79e-19,75;UBERON:0004121,1.09e-17,95;UBERON:0000924,1.09e-17,95;UBERON:0006601,1.09e-17,95;UBERON:0002346,1.30e-17,64;UBERON:0003075,1.30e-17,64;UBERON:0007284,1.30e-17,64;UBERON:0003056,2.20e-14,49;UBERON:0010371,2.96e-14,73;UBERON:0000073,3.07e-14,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0000955,2.31e-12,47;UBERON:0006238,2.31e-12,47;UBERON:0002780,6.76e-12,39;UBERON:0001890,6.76e-12,39;UBERON:0006240,6.76e-12,39;UBERON:0002616,7.33e-12,46;UBERON:0003080,1.28e-11,40;UBERON:0002020,1.38e-11,34;UBERON:0003528,7.85e-10,29;UBERON:0002791,7.85e-10,29;UBERON:0001893,7.85e-10,29;UBERON:0010314,9.34e-10,92;UBERON:0000153,5.65e-09,43;UBERON:0000956,7.17e-08,21;UBERON:0001869,7.17e-08,21;UBERON:0000203,7.17e-08,21;UBERON:0007811,8.26e-07,36|phase1_expression=16.8156289460034,10.4692622291808,10.4649825059593,15.4256747766483,12.0214975187123,11.7515490338323,14.9512089981136,18.9811285459117,28.1577444303333,35.811872527265,18.1491046319035,22.0968880417082,22.2560948910567,18.0960233007325,19.3203661853084,13.1608923803387,17.4890469532037,16.4040325986284,18.0991052359575,15.2780274647291,18.6244805430843,13.7021512657222,13.8435888243636,10.8794847499517,11.4704640533585,10.9104073181854,9.90752591165872,9.9116767035509,7.9809836171677,7.81293402255785,6.43018480900384,20.3209815507082,20.9122027778754,31.6963362030877,11.8429164098023,12.3013637565284,8.37094360675713,7.53356935326434,7.0320181007142,5.75876118371178,8.2352408324342,9.56263678941824,6.311634589405,9.9458486200706,9.52943153463437,10.4621648732158,36.7723931843578,20.494364699762,11.643367684927,11.4713640453827,19.3181261843,28.7505128729943,17.6171736360623,16.6833292662609,21.5100031451177,12.0911934936895,17.1920063963254,13.9231464914909,55.2323938146702,70.8847912224524,67.186128771655,18.9752937958714,19.5644855144451,13.0485459005803,22.7439263390404,25.5772841380596,18.8748069626595,23.4373166246148,46.245567089581,61.1576900642559,53.422540183251,17.424710048632,27.6085676189517,48.016393292262,58.0823554370512,75.3759405020217,25.3266526298594,18.7700386985226,23.6554061214615,63.305418110493,60.8392829956024,55.7377306495733,19.5428099300967,12.380777420697,19.5581757154317,33.8822873294718,30.0404246486107,41.0078780815661,8.70851223331617,9.97544593409569,16.8121403446973,15.487629785665,12.9194553404473,12.4131734076698,15.5946340187441,11.2006721774334,10.6737759300131,15.5091593546033,17.9252343175979,14.1335829804136,11.8308472612412,16.6824420638613,12.7402619853323,28.4426681261332,13.8554266247177,16.7217511213565,14.1546844604139,11.418387971906,20.1971549244794,11.7269289861212,15.6136794089522,13.3964810457342,14.2981608298756,14.1679282119465,14.345822270556,10.3046604890334,10.3821886448437,10.8449517689934,18.5768215909474,12.6178142958979,14.1338571814652,14.5462575940567,18.6391761218122,28.9852989041432,22.2013509222262,10.2182822083437,11.981512450592,8.99854096490112,10.0385479387721,16.3271796951257,27.4500361691176,41.5915905493581,24.509229147111,15.5986428971502,22.8566849015516,15.2506787283692,13.1372779366908,11.0722203842983,12.6361379216837,20.412860020988,30.0578223243846,23.9098188610812,27.7295679900238,22.9071323110287,26.3981616707152,32.6689986726367,28.3916225415978,19.4027528054262,35.568718833919,38.1994281938995,32.7269090944945,20.604398848192,29.4730084179134,22.6363908239408,19.7550850951626,24.4812148186747,16.1509033082044,11.8380037272769,11.6507034752193,21.1268287986212,18.7620847984877,20.7071370680167,23.4377288229358,21.447301260467,17.4321837562737,16.0448421877781,17.1694976895756,13.3112490298573,13.3293478429919,12.3125598059321,13.0520783368828,13.5965988305559,13.6121071480451,11.0049263383505,18.0849355765149,28.9161960785789,10.2429822724977,13.2225283331772,25.5945900642281,28.1006372951131,21.7786009634338,17.1430995929841,12.2307924114679,10.6526350623033,10.4396393539793,9.71723832871664,9.0480675168097,11.5394753783867,10.3330966173134,13.4822911298133,12.752144942607,13.7407478545513,23.8981555200883,22.6212054967263,20.2873924211545,20.3651327845314,19.3952487167626,14.097299797954,17.200338097798,11.6612016903886,11.1469096767376,9.87177311374404,10.0793893209631,19.8545675802152,12.3832166921318,15.7403478669398,9.53442570525964,12.3000351473733,9.42115651591253,13.5217184601881,5.67473293712624,10.7078951143352,12.9391385874619,7.07067800570156,11.8574315783533,11.6186283855671,12.3784215330119,6.75420929908714,13.8564892624954,21.2230381182943,25.7484662778401,22.9155865796504,22.0608833391192,25.1259386162724,19.5195785526531,14.0496226457615,20.1772984455924,16.1669223443606,20.4102103881583,16.3863314715738,13.1240586218081,11.8612228036839,10.5553898757491,12.5098307278303,10.8188140064188,15.1765210467603,14.6101036888891,12.3072270921813,15.2459499200308,7.32165688892682,28.3957397474631,28.8924670779512,26.4970779211343,25.091723785018,24.7306528231457,30.0061122636162,30.3608026256171,21.9191893433484,36.7617633490267,32.1321316421807,14.3359486060351,16.025904330053,14.4969393824683,18.1467135269789,14.6019652173959,27.4342118855129,19.3487076457441,12.8251454234011,13.8791889653963,13.5271465095328,9.56184684722418,15.2684166380552,17.1118741624666,12.9575070753685,7.37930260024991,11.3449097573006,25.1925308257803,30.4303248912914,35.5736380402575,28.7211626942334,24.650292476276,27.2904290931168,19.5813334516524,17.9634319977614,15.0189893160775,12.7099242518292,13.6727606794076,20.610781617685,13.2400829890643,16.1638638807458,14.0859365923701,13.9519764783302,11.659233465194,15.9465759729038,11.619219894254,18.57481811669,14.4451731348375,15.25784501738,17.3601669205702,11.2101304871196,10.0287273696375,12.1757763521582,10.7795979567451,14.3200592702267,25.1487114897003,19.7219883113043,18.3609079397062,15.4725339050707,14.8486543347401,15.9139928734088,12.1500579916244,11.7790173892813,6.22151871800606,22.9895545842163,42.8406633399985,19.4371509857172,16.2149320647956,17.3061557626202,13.0451421712508,16.0508319216239,13.1440107283244,14.3224823328345,14.0511521530453,27.5405897741647,24.7705805381764,26.2289230121388,21.0834223901771,20.234058561471,23.6455897819587,26.8540043501222,30.5969286363148,21.7553763631144,22.7441871848849,29.4822033848591,21.03307863678,23.7949796922944,28.0678696530487,25.977197242889,31.5567635890236,9.29594572822367,21.9766093840324,20.365045450351,20.4819231964176,14.1028403643499,15.5776454624481,22.1613465363391,13.9339446401393,12.0377304968487,31.6261031865557,32.6830917920096,39.5297904273184,32.8239578276443,26.718218271055,36.2589070747056,24.300810008345,24.3173449741079,27.1885445390523,27.9590568345983,36.2217843068777,27.5327162646711,23.3905039883164,24.3106717068294,19.4940241244024,18.5681943534514,21.1134391411534,20.8095407811283,17.9714757371417,13.8983466470089,22.5596576902313,15.8446126764304,19.4774335537355,16.5184893204563,17.3455116245952,18.0991602687568,18.0779548473975,17.5547390621972,21.8405527425753,21.0494455792188,21.2578936478958,13.665637074269,14.0677352068919,20.2031519118937,20.0452980284654,15.9921608915269,20.6708609346233,18.6779495120868,17.3829265722703,19.0788372363631,17.9138877367503,17.139779933348,17.5969348562966,17.9726735775721,17.9403148212461,21.2338991247254,19.4163235009689,12.247650080753,12.4337415844748,9.70602244125868,8.11537424671475|short_description=p1@Ncoa5}} | ||
|EntrezGene=228869 | |||
|HGNC= | |||
|MCL_coexpression_id=108 | |||
|UniProt=B7ZC23,B7ZC24,Q91W39 | |||
|association_with_transcript=0bp_to_ENSMUST00000121377,ENSMUST00000122070,ENSMUST00000127545,ENSMUST00000141663,NM_144892,uc008nwv.1,uc008nww.1_5end | |||
|description=CAGE_peak_1_at_Ncoa5_5end | |||
|id=chr2:164860270..164860320,- | |||
|ontology_enrichment_celltype=CL:0000540!4.32e-13!33;CL:0000047!4.32e-13!33;CL:0000031!4.32e-13!33;CL:0000404!4.32e-13!33;CL:0002319!1.37e-10!43;CL:0000221!6.17e-10!44;CL:0000133!6.17e-10!44;CL:0000117!6.28e-10!23;CL:0000337!6.28e-10!23;CL:0000393!8.88e-09!39;CL:0000211!8.88e-09!39;CL:0000055!3.26e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.32e-13,33;CL:0000047,4.32e-13,33;CL:0000031,4.32e-13,33;CL:0000404,4.32e-13,33;CL:0002319,1.37e-10,43;CL:0000221,6.17e-10,44;CL:0000133,6.17e-10,44;CL:0000117,6.28e-10,23;CL:0000337,6.28e-10,23;CL:0000393,8.88e-09,39;CL:0000211,8.88e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!6.18e-23!94;UBERON:0001017!8.00e-21!73;UBERON:0005743!8.00e-21!73;UBERON:0007811!6.03e-20!86;UBERON:0000073!6.79e-19!75;UBERON:0001016!6.79e-19!75;UBERON:0004121!5.10e-15!102;UBERON:0000924!5.10e-15!102;UBERON:0006601!5.10e-15!102;UBERON:0003056!2.20e-14!49;UBERON:0000033!3.13e-14!63;UBERON:0002346!3.25e-14!71;UBERON:0003075!3.25e-14!71;UBERON:0007284!3.25e-14!71;UBERON:0001049!2.16e-13!52;UBERON:0005068!2.16e-13!52;UBERON:0006241!2.16e-13!52;UBERON:0007135!2.16e-13!52;UBERON:0000955!6.50e-13!50;UBERON:0006238!6.50e-13!50;UBERON:0002616!2.08e-12!49;UBERON:0002780!6.76e-12!39;UBERON:0001890!6.76e-12!39;UBERON:0006240!6.76e-12!39;UBERON:0003080!1.28e-11!40;UBERON:0002020!1.38e-11!34;UBERON:0002791!7.85e-10!29;UBERON:0003528!7.85e-10!29;UBERON:0001893!7.85e-10!29;UBERON:0000956!7.17e-08!21;UBERON:0001869!7.17e-08!21;UBERON:0000203!7.17e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.00e-21,73;UBERON:0001016,6.79e-19,75;UBERON:0004121,1.09e-17,95;UBERON:0000924,1.09e-17,95;UBERON:0006601,1.09e-17,95;UBERON:0002346,1.30e-17,64;UBERON:0003075,1.30e-17,64;UBERON:0007284,1.30e-17,64;UBERON:0003056,2.20e-14,49;UBERON:0010371,2.96e-14,73;UBERON:0000073,3.07e-14,54;UBERON:0001049,2.16e-13,52;UBERON:0005068,2.16e-13,52;UBERON:0006241,2.16e-13,52;UBERON:0007135,2.16e-13,52;UBERON:0000955,2.31e-12,47;UBERON:0006238,2.31e-12,47;UBERON:0002780,6.76e-12,39;UBERON:0001890,6.76e-12,39;UBERON:0006240,6.76e-12,39;UBERON:0002616,7.33e-12,46;UBERON:0003080,1.28e-11,40;UBERON:0002020,1.38e-11,34;UBERON:0003528,7.85e-10,29;UBERON:0002791,7.85e-10,29;UBERON:0001893,7.85e-10,29;UBERON:0010314,9.34e-10,92;UBERON:0000153,5.65e-09,43;UBERON:0000956,7.17e-08,21;UBERON:0001869,7.17e-08,21;UBERON:0000203,7.17e-08,21;UBERON:0007811,8.26e-07,36 | |||
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| |||
|short_description=p1@Ncoa5 | |||
}} |
Revision as of 22:55, 13 September 2013
Short description: | p1@Ncoa5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ncoa5_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000121377, ENSMUST00000122070, ENSMUST00000127545, ENSMUST00000141663, NM_144892, uc008nwv.1, uc008nww.1_5end |
EntrezGene: | Ncoa5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.32e-13 | 33 |
neuronal stem cell | 4.32e-13 | 33 |
neuroblast | 4.32e-13 | 33 |
electrically signaling cell | 4.32e-13 | 33 |
neural cell | 1.37e-10 | 43 |
ectodermal cell | 6.17e-10 | 44 |
neurectodermal cell | 6.17e-10 | 44 |
CNS neuron (sensu Vertebrata) | 6.28e-10 | 23 |
neuroblast (sensu Vertebrata) | 6.28e-10 | 23 |
electrically responsive cell | 8.88e-09 | 39 |
electrically active cell | 8.88e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.00e-21 | 73 |
nervous system | 6.79e-19 | 75 |
ectoderm-derived structure | 1.09e-17 | 95 |
ectoderm | 1.09e-17 | 95 |
presumptive ectoderm | 1.09e-17 | 95 |
neurectoderm | 1.30e-17 | 64 |
neural plate | 1.30e-17 | 64 |
presumptive neural plate | 1.30e-17 | 64 |
pre-chordal neural plate | 2.20e-14 | 49 |
ecto-epithelium | 2.96e-14 | 73 |
regional part of nervous system | 3.07e-14 | 54 |
neural tube | 2.16e-13 | 52 |
neural rod | 2.16e-13 | 52 |
future spinal cord | 2.16e-13 | 52 |
neural keel | 2.16e-13 | 52 |
brain | 2.31e-12 | 47 |
future brain | 2.31e-12 | 47 |
regional part of forebrain | 6.76e-12 | 39 |
forebrain | 6.76e-12 | 39 |
future forebrain | 6.76e-12 | 39 |
regional part of brain | 7.33e-12 | 46 |
anterior neural tube | 1.28e-11 | 40 |
gray matter | 1.38e-11 | 34 |
brain grey matter | 7.85e-10 | 29 |
regional part of telencephalon | 7.85e-10 | 29 |
telencephalon | 7.85e-10 | 29 |
structure with developmental contribution from neural crest | 9.34e-10 | 92 |
anterior region of body | 5.65e-09 | 43 |
cerebral cortex | 7.17e-08 | 21 |
cerebral hemisphere | 7.17e-08 | 21 |
pallium | 7.17e-08 | 21 |
craniocervical region | 8.26e-07 | 36 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.