FFCP PHASE1:Mm9::chr3:5221225..5221245,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1459|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:5221225..5221245,+|id=chr3:5221225..5221245,+|ontology_enrichment_celltype=CL:0000540!1.55e-18!33;CL:0000047!1.55e-18!33;CL:0000031!1.55e-18!33;CL:0000404!1.55e-18!33;CL:0000393!1.03e-13!39;CL:0000211!1.03e-13!39;CL:0000117!2.92e-13!23;CL:0000337!2.92e-13!23;CL:0000221!2.89e-12!44;CL:0000133!2.89e-12!44;CL:0002319!5.10e-12!43;CL:0000055!1.04e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,3.62e-16,23;CL:0000337,3.62e-16,23;CL:0000540,4.19e-14,33;CL:0000047,4.19e-14,33;CL:0000031,4.19e-14,33;CL:0000404,4.19e-14,33;CL:0000393,2.10e-11,39;CL:0000211,2.10e-11,39;CL:0002319,4.98e-10,43;CL:0000221,1.00e-09,44;CL:0000133,1.00e-09,44;CL:0002613,5.11e-09,3;CL:0000120,8.21e-09,3;CL:0002612,5.74e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.80e-11!102;UBERON:0000924!3.80e-11!102;UBERON:0006601!3.80e-11!102;UBERON:0001017!7.00e-11!73;UBERON:0005743!7.00e-11!73;UBERON:0000073!3.56e-10!75;UBERON:0001016!3.56e-10!75;UBERON:0002346!1.77e-08!71;UBERON:0003075!1.77e-08!71;UBERON:0007284!1.77e-08!71;UBERON:0000033!6.26e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0002102,2.95e-17,7;UBERON:0004710,2.95e-17,7;UBERON:0005419,2.95e-17,7;UBERON:0005417,2.95e-17,7;UBERON:0005729,2.95e-17,7;UBERON:0010708,5.74e-15,8;UBERON:0000026,1.27e-09,12;UBERON:0004708,1.27e-09,12;UBERON:0002101,1.27e-09,12;UBERON:0004357,1.27e-09,12;UBERON:0004347,1.27e-09,12;UBERON:0005732,1.27e-09,12;UBERON:0005733,1.27e-09,12;UBERON:0010707,8.42e-09,13;UBERON:0002420,3.58e-08,8;UBERON:0007245,3.58e-08,8;UBERON:0010009,3.58e-08,8;UBERON:0010011,3.58e-08,8;UBERON:0000454,3.58e-08,8;UBERON:0002257,5.74e-08,3;UBERON:0001948,5.76e-08,5;UBERON:0002315,5.76e-08,5|phase1_expression=3.04282809499109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,5.05791152148994,1.5869729378161,6.97214543856797,0,0,0,0,0,0,0,0.311068836925433,0.270011876663381,0.210324961351382,1.42825492201902,0.220868540951614,0.857435594504678,0.862609239164127,0,1.10115880999389,0.255374676170375,0.768032666281217,2.50583946687368,6.03818447775904,7.29278718779464,0.558365998002762,1.68828783009504,1.68078072554491,1.47314292736834,1.42371680799103,3.16879057903011,0,0,0,0,0,0,0,0,0,0.340860645156116,0,1.41335829804136,0.281686839553361,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.502617408451458,0,0,0.41557608911912,0.486723789203273,0,0.248813941220186,0,0.631325567659422,1.56144531555244,0.459804208866946,0.360124259610698,0.60281927134286,0.884474488967262,0.384341160854549,0.937017245597288,0,2.80238390812695,6.42960672570586,4.39877810409872,2.19195732427575,4.17070873838397,1.39300866608867,1.02891068203972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,1.49301775374664,0.928946687441754,0.644337306610467,0.403367049246685,0.22237804384487,0.190225626112559,0,0,0,0.198956472041151,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.35163505977661,0.983609672260053,0.252470927204373,0.631016438832513,0.780877488593277,1.29254038639679,0.955875191810208,0.222798674082394,0.566153061577665,0.809621403349789,0.876767573733936,0.395287777946524,0.642642632843614,0,0,0,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0.356497378384721,0,0,0,1.02131881726136,1.08036656418786,0.129358683782755,0,0.709360934569094,0.356737635204141,0.329098041204242,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,1.73984796469624,0.609958401380546,0.756037385752609,0,0.436725127492355,0.269728692769641,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42498247027783,4.38927360741134,3.75613932659095,1.94485373654635,1.46729213839588,0.367687016900028,0,0.412070114477788,0.962757628775446,1.01078884705519,0.50695859978048,0.565879024158229,0.655490552289177,0.320125762024346,0.631790158511746,1.42888107384922,0.463537303779422,0.38581844092741,0.412085900803307,0.441596760403192,0,0.887379030796687,0.953744759789284,0.581385666529314,0.658765662907314,0.592302255241736,0.548783918618318,0.263069711437843,0.407412341537585,0.561142271657738,0.355905054372522,0.394017929502254,0,1.08455788830176,1.15743966588685,0.999242311751784,0.233931608445408,0.214871054048298,0,0,0.231867835620421|short_description=p@chr3:5221225..5221245,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1459 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:5221225..5221245,+ | |||
|id=chr3:5221225..5221245,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.55e-18!33;CL:0000047!1.55e-18!33;CL:0000031!1.55e-18!33;CL:0000404!1.55e-18!33;CL:0000393!1.03e-13!39;CL:0000211!1.03e-13!39;CL:0000117!2.92e-13!23;CL:0000337!2.92e-13!23;CL:0000221!2.89e-12!44;CL:0000133!2.89e-12!44;CL:0002319!5.10e-12!43;CL:0000055!1.04e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.62e-16,23;CL:0000337,3.62e-16,23;CL:0000540,4.19e-14,33;CL:0000047,4.19e-14,33;CL:0000031,4.19e-14,33;CL:0000404,4.19e-14,33;CL:0000393,2.10e-11,39;CL:0000211,2.10e-11,39;CL:0002319,4.98e-10,43;CL:0000221,1.00e-09,44;CL:0000133,1.00e-09,44;CL:0002613,5.11e-09,3;CL:0000120,8.21e-09,3;CL:0002612,5.74e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.80e-11!102;UBERON:0000924!3.80e-11!102;UBERON:0006601!3.80e-11!102;UBERON:0001017!7.00e-11!73;UBERON:0005743!7.00e-11!73;UBERON:0000073!3.56e-10!75;UBERON:0001016!3.56e-10!75;UBERON:0002346!1.77e-08!71;UBERON:0003075!1.77e-08!71;UBERON:0007284!1.77e-08!71;UBERON:0000033!6.26e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,2.95e-17,7;UBERON:0004710,2.95e-17,7;UBERON:0005419,2.95e-17,7;UBERON:0005417,2.95e-17,7;UBERON:0005729,2.95e-17,7;UBERON:0010708,5.74e-15,8;UBERON:0000026,1.27e-09,12;UBERON:0004708,1.27e-09,12;UBERON:0002101,1.27e-09,12;UBERON:0004357,1.27e-09,12;UBERON:0004347,1.27e-09,12;UBERON:0005732,1.27e-09,12;UBERON:0005733,1.27e-09,12;UBERON:0010707,8.42e-09,13;UBERON:0002420,3.58e-08,8;UBERON:0007245,3.58e-08,8;UBERON:0010009,3.58e-08,8;UBERON:0010011,3.58e-08,8;UBERON:0000454,3.58e-08,8;UBERON:0002257,5.74e-08,3;UBERON:0001948,5.76e-08,5;UBERON:0002315,5.76e-08,5 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,5.05791152148994,1.5869729378161,6.97214543856797,0,0,0,0,0,0,0,0.311068836925433,0.270011876663381,0.210324961351382,1.42825492201902,0.220868540951614,0.857435594504678,0.862609239164127,0,1.10115880999389,0.255374676170375,0.768032666281217,2.50583946687368,6.03818447775904,7.29278718779464,0.558365998002762,1.68828783009504,1.68078072554491,1.47314292736834,1.42371680799103,3.16879057903011,0,0,0,0,0,0,0,0,0,0.340860645156116,0,1.41335829804136,0.281686839553361,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0.323533699894818,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0.502617408451458,0,0,0.41557608911912,0.486723789203273,0,0.248813941220186,0,0.631325567659422,1.56144531555244,0.459804208866946,0.360124259610698,0.60281927134286,0.884474488967262,0.384341160854549,0.937017245597288,0,2.80238390812695,6.42960672570586,4.39877810409872,2.19195732427575,4.17070873838397,1.39300866608867,1.02891068203972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,1.49301775374664,0.928946687441754,0.644337306610467,0.403367049246685,0.22237804384487,0.190225626112559,0,0,0,0.198956472041151,0,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0.274561413188081,0,0.372140947668503,0.312037673114561,0.252578877947112,0.179397413521912,0.482443521363367,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0.35163505977661,0.983609672260053,0.252470927204373,0.631016438832513,0.780877488593277,1.29254038639679,0.955875191810208,0.222798674082394,0.566153061577665,0.809621403349789,0.876767573733936,0.395287777946524,0.642642632843614,0,0,0,0,0,0.242780636154981,0,0,0,0.307435147943927,0,0,0.356497378384721,0,0,0,1.02131881726136,1.08036656418786,0.129358683782755,0,0.709360934569094,0.356737635204141,0.329098041204242,0.304464949114599,0,0,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,1.73984796469624,0.609958401380546,0.756037385752609,0,0.436725127492355,0.269728692769641,0.165306911450672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42498247027783,4.38927360741134,3.75613932659095,1.94485373654635,1.46729213839588,0.367687016900028,0,0.412070114477788,0.962757628775446,1.01078884705519,0.50695859978048,0.565879024158229,0.655490552289177,0.320125762024346,0.631790158511746,1.42888107384922,0.463537303779422,0.38581844092741,0.412085900803307,0.441596760403192,0,0.887379030796687,0.953744759789284,0.581385666529314,0.658765662907314,0.592302255241736,0.548783918618318,0.263069711437843,0.407412341537585,0.561142271657738,0.355905054372522,0.394017929502254,0,1.08455788830176,1.15743966588685,0.999242311751784,0.233931608445408,0.214871054048298,0,0,0.231867835620421 | |||
|short_description=p@chr3:5221225..5221245,+ | |||
}} |
Revision as of 02:17, 14 September 2013
Short description: | p@chr3:5221225..5221245, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:5221225..5221245, + |
Coexpression cluster: | MCL_coexpression_mm9:1459 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.62e-16 | 23 |
neuroblast (sensu Vertebrata) | 3.62e-16 | 23 |
neuron | 4.19e-14 | 33 |
neuronal stem cell | 4.19e-14 | 33 |
neuroblast | 4.19e-14 | 33 |
electrically signaling cell | 4.19e-14 | 33 |
electrically responsive cell | 2.10e-11 | 39 |
electrically active cell | 2.10e-11 | 39 |
neural cell | 4.98e-10 | 43 |
ectodermal cell | 1.00e-09 | 44 |
neurectodermal cell | 1.00e-09 | 44 |
striatum neuron | 5.11e-09 | 3 |
granule cell | 8.21e-09 | 3 |
neuron of the ventral spinal cord | 5.74e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
forelimb | 2.95e-17 | 7 |
pectoral appendage | 2.95e-17 | 7 |
pectoral appendage bud | 2.95e-17 | 7 |
forelimb bud | 2.95e-17 | 7 |
forelimb/pectoral fin field | 2.95e-17 | 7 |
pectoral complex | 5.74e-15 | 8 |
appendage | 1.27e-09 | 12 |
paired limb/fin | 1.27e-09 | 12 |
limb | 1.27e-09 | 12 |
paired limb/fin bud | 1.27e-09 | 12 |
limb bud | 1.27e-09 | 12 |
limb/fin field | 1.27e-09 | 12 |
limb field | 1.27e-09 | 12 |
appendage girdle complex | 8.42e-09 | 13 |
basal ganglion | 3.58e-08 | 8 |
nuclear complex of neuraxis | 3.58e-08 | 8 |
aggregate regional part of brain | 3.58e-08 | 8 |
collection of basal ganglia | 3.58e-08 | 8 |
cerebral subcortex | 3.58e-08 | 8 |
ventral horn of spinal cord | 5.74e-08 | 3 |
regional part of spinal cord | 5.76e-08 | 5 |
gray matter of spinal cord | 5.76e-08 | 5 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.