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MCL coexpression mm9:100: Difference between revisions

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{{MCL_coexpression_mm9
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of transcription, DNA-dependent;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0006351;transcription, DNA-dependent;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0032774;RNA biosynthetic process;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0045449;regulation of transcription;1.15739381032375e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1867205629498e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0006350;transcription;1.1867205629498e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0010468;regulation of gene expression;1.57070854974608e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0031323;regulation of cellular metabolic process;2.32376774256967e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0019222;regulation of metabolic process;3.30989259478468e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0016070;RNA metabolic process;4.17018828948098e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0050794;regulation of cellular process;8.05939042937337e-05;20677,18992,20933,140577,20666,54126,70122,16870,18014,66993,271305,242466,545474,105377,170729!GO:0050789;regulation of biological process;8.30519623796587e-05;20677,18992,20933,140577,20666,54126,70122,16870,18014,14417,66993,271305,242466,545474,105377,170729!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000154209456836107;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0010467;gene expression;0.000288456481903389;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0065007;biological regulation;0.000506072611848329;20677,18992,20933,140577,20666,54126,70122,16870,18014,14417,66993,271305,242466,545474,105377,170729!GO:0003677;DNA binding;0.00376362238179168;20677,16870,18992,18014,140577,271305,20666,545474,105377,170729!GO:0043283;biopolymer metabolic process;0.00664035286554795;20677,18992,20933,140577,20666,70122,16870,104175,18014,66993,271305,242466,545474,105377,170729!GO:0003700;transcription factor activity;0.00709432958641498;20677,16870,140577,20666,18992,105377!GO:0051098;regulation of binding;0.00928388962222668;242466,66993!GO:0003676;nucleic acid binding;0.0225851821885137;20677,16870,18992,18014,140577,271305,20666,545474,105377,17690,170729!GO:0031536;positive regulation of exit from mitosis;0.0253407908040023;18014!GO:0031017;exocrine pancreas development;0.0253407908040023;20677!GO:0044451;nucleoplasm part;0.0273498646958529;20677,16870,20666,18992,20933!GO:0005654;nucleoplasm;0.032149813537008;20677,16870,20666,18992,20933!GO:0021985;neurohypophysis development;0.0371349305754187;18992!GO:0004351;glutamate decarboxylase activity;0.0371349305754187;14417!GO:0010458;exit from mitosis;0.0371349305754187;18014!GO:0007096;regulation of exit from mitosis;0.0371349305754187;18014!GO:0051100;negative regulation of binding;0.0371349305754187;242466!GO:0043392;negative regulation of DNA binding;0.0371349305754187;242466!GO:0031981;nuclear lumen;0.0463792531986173;20677,16870,20666,18992,20933!GO:0001957;intramembranous ossification;0.0463792531986173;433938!GO:0021854;hypothalamus development;0.0463792531986173;18992!GO:0014002;astrocyte development;0.0463792531986173;18992!GO:0016286;small conductance calcium-activated potassium channel activity;0.0463792531986173;84036!GO:0021979;hypothalamus cell 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|gostat_on_MCL_coexpression=GO:0006355;regulation of transcription, DNA-dependent;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0006351;transcription, DNA-dependent;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0032774;RNA biosynthetic process;1.06955522168773e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0045449;regulation of transcription;1.15739381032375e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.1867205629498e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0006350;transcription;1.1867205629498e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0010468;regulation of gene expression;1.57070854974608e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0031323;regulation of cellular metabolic process;2.32376774256967e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0019222;regulation of metabolic process;3.30989259478468e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0016070;RNA metabolic process;4.17018828948098e-05;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0050794;regulation of cellular process;8.05939042937337e-05;20677,18992,20933,140577,20666,54126,70122,16870,18014,66993,271305,242466,545474,105377,170729!GO:0050789;regulation of biological process;8.30519623796587e-05;20677,18992,20933,140577,20666,54126,70122,16870,18014,14417,66993,271305,242466,545474,105377,170729!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000154209456836107;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0010467;gene expression;0.000288456481903389;20677,16870,18992,20933,18014,66993,140577,271305,242466,20666,545474,70122,170729,105377!GO:0065007;biological regulation;0.000506072611848329;20677,18992,20933,140577,20666,54126,70122,16870,18014,14417,66993,271305,242466,545474,105377,170729!GO:0003677;DNA binding;0.00376362238179168;20677,16870,18992,18014,140577,271305,20666,545474,105377,170729!GO:0043283;biopolymer metabolic process;0.00664035286554795;20677,18992,20933,140577,20666,70122,16870,104175,18014,66993,271305,242466,545474,105377,170729!GO:0003700;transcription factor activity;0.00709432958641498;20677,16870,140577,20666,18992,105377!GO:0051098;regulation of binding;0.00928388962222668;242466,66993!GO:0003676;nucleic acid binding;0.0225851821885137;20677,16870,18992,18014,140577,271305,20666,545474,105377,17690,170729!GO:0031536;positive regulation of exit from mitosis;0.0253407908040023;18014!GO:0031017;exocrine pancreas development;0.0253407908040023;20677!GO:0044451;nucleoplasm part;0.0273498646958529;20677,16870,20666,18992,20933!GO:0005654;nucleoplasm;0.032149813537008;20677,16870,20666,18992,20933!GO:0021985;neurohypophysis development;0.0371349305754187;18992!GO:0004351;glutamate decarboxylase activity;0.0371349305754187;14417!GO:0010458;exit from mitosis;0.0371349305754187;18014!GO:0007096;regulation of exit from mitosis;0.0371349305754187;18014!GO:0051100;negative regulation of binding;0.0371349305754187;242466!GO:0043392;negative regulation of DNA binding;0.0371349305754187;242466!GO:0031981;nuclear lumen;0.0463792531986173;20677,16870,20666,18992,20933!GO:0001957;intramembranous ossification;0.0463792531986173;433938!GO:0021854;hypothalamus development;0.0463792531986173;18992!GO:0014002;astrocyte development;0.0463792531986173;18992!GO:0016286;small conductance calcium-activated potassium channel activity;0.0463792531986173;84036!GO:0021979;hypothalamus cell differentiation;0.0463792531986173;18992!
|ontology_enrichment_celltype=CL:0000117!1.29e-15!23;CL:0000337!1.29e-15!23;CL:0000540!1.03e-12!33;CL:0000047!1.03e-12!33;CL:0000031!1.03e-12!33;CL:0000404!1.03e-12!33;CL:0002609!6.32e-10!6;CL:0000393!8.35e-10!39;CL:0000211!8.35e-10!39;CL:0002319!3.44e-09!43;CL:0000221!7.67e-09!44;CL:0000133!7.67e-09!44;CL:0000055!2.49e-07!49
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002346!3.13e-14!64;UBERON:0003075!3.13e-14!64;UBERON:0007284!3.13e-14!64;UBERON:0010371!4.13e-12!73;UBERON:0003056!4.94e-12!49;UBERON:0004121!2.54e-10!95;UBERON:0000924!2.54e-10!95;UBERON:0006601!2.54e-10!95;UBERON:0001049!1.24e-09!52;UBERON:0005068!1.24e-09!52;UBERON:0006241!1.24e-09!52;UBERON:0007135!1.24e-09!52;UBERON:0001017!2.25e-09!73;UBERON:0000073!5.16e-09!54;UBERON:0001016!6.79e-09!75;UBERON:0002020!2.36e-08!34;UBERON:0002780!7.07e-08!39;UBERON:0001890!7.07e-08!39;UBERON:0006240!7.07e-08!39;UBERON:0010314!1.16e-07!92;UBERON:0003080!1.50e-07!40;UBERON:0001948!8.03e-07!5;UBERON:0002315!8.03e-07!5
|tfbs_overrepresentation_for_novel_motifs=0.461279,0.911261,1.88131,0.321251,0.0770254,0.13955,0.481658,0.259195,0.0783087,0.22932,0.7271,0.444106,0.545711,0.743698,0.161721,0,0.384597,0.163734,0.0243626,0.0545911,0.347702,0.142333,0.102201,0.0106267,0.0027822,0.131258,0.368291,1.3509,0.778324,0.392452,0.251342,0.142997,0.424191,0.13794,0.742163,0.983379,1.56155,0.433109,0.743426,2.44268,0.021371,1.28509,0.0695792,0.244331,0.808377,0.104825,0.951305,1.47003,0.00150158,0.10639,0.351416,0.483542,0.267219,0.57476,0.0862643,0.109989,0.0383371,0.405868,0.0900447,0.352629,0.0313944,0.318337,0.00259808,0.0625633,0.231717,0.407737,0.149366,0.379143,0.865669,1.37263,0.19812,0.000515125,3.88017,0.329123,4.41317,0.906792,0.18762,0.0373294,0.116058,0.253701,0.0276532,0.218572,0.506584,0.0803525,0.208632,1.43538,0.751955,2.01141,0.439535,0.509398,0.55142,0.466525,0.152981,0.0502762,0.708344,0.00875437,0.778251,0.155219,0.0414075,0.020801,0.134729,0.332425,0.254585,0.352523,0.350562,0.15729,0.249459,0.0490931,0.522309,0.642415,0.3011,1.92239,0.0121556,0.751153,0.19228,0.0688863,1.74346,0.0277189,0.199414,0.356349,0.335367,0.293983,0.414525,0.106814,1.19697,2.66086,0.507918,0.0373716,0.889259,3.16897,0.237452,0.815458,0.133441,0.0529422,0.205229,0.00233806,0.0791785,0.0854506,0.176297,0.836351,1.21302,0.151855,0.0204093,0.0384568,1.19669,3.47177,0.00820032,0.799695,0.683665,0.788622,0.26069,2.61818,0.0800884,0.486803,1.43213,0.367203,0.073342,0.0770233,0.0325035,0.015381,0.18174,0.793616,0.118905,0.294305,0.0132192,0.115321,0.0846819,0.636944,0.925076
|tfbs_overrepresentation_jaspar=MA0003.1;2.96639,MA0004.1;0.0264324,MA0006.1;0.22322,MA0007.1;0.0504158,MA0009.1;0.164014,MA0014.1;1.61275,MA0017.1;0.00145157,MA0019.1;0.285674,MA0024.1;0.130059,MA0025.1;0.131204,MA0027.1;1.31347,MA0028.1;0.258002,MA0029.1;0.820339,MA0030.1;1.21739,MA0031.1;0.23819,MA0038.1;0.615505,MA0040.1;1.07708,MA0041.1;0.816516,MA0042.1;0.195194,MA0043.1;0.0726685,MA0046.1;0.0526083,MA0048.1;1.05506,MA0050.1;0.443824,MA0051.1;0.0616002,MA0052.1;0.181425,MA0055.1;0.0226084,MA0056.1;0,MA0057.1;6.87922,MA0058.1;0.0310419,MA0059.1;0.130686,MA0060.1;0.317884,MA0061.1;0.207166,MA0063.1;0,MA0066.1;0.0153527,MA0067.1;0.191528,MA0068.1;0.679631,MA0069.1;0.0482348,MA0070.1;0.0455316,MA0071.1;0.177494,MA0072.1;0.16628,MA0073.1;17.8381,MA0074.1;0.0097596,MA0076.1;0.122944,MA0077.1;0.14881,MA0078.1;0.527092,MA0081.1;0.270012,MA0083.1;0.0723826,MA0084.1;0.421168,MA0087.1;0.210524,MA0088.1;0.202915,MA0089.1;0,MA0090.1;0.349743,MA0091.1;0.138293,MA0092.1;0.0155321,MA0093.1;0.0227854,MA0095.1;0,MA0098.1;0,MA0100.1;0.0762019,MA0101.1;0.824962,MA0103.1;0.0060688,MA0105.1;0.944776,MA0106.1;0.00531662,MA0107.1;1.15798,MA0108.2;0.162918,MA0109.1;0,MA0111.1;0.0194762,MA0113.1;0.288484,MA0114.1;0.0559041,MA0115.1;0.0736825,MA0116.1;0.313352,MA0117.1;0.486736,MA0119.1;0.0859712,MA0122.1;0.243798,MA0124.1;0.161302,MA0125.1;0.780103,MA0130.1;0,MA0131.1;0.0492137,MA0132.1;0,MA0133.1;0,MA0135.1;1.02251,MA0136.1;0.103537,MA0139.1;0.407494,MA0140.1;0.154442,MA0141.1;0.0474578,MA0142.1;0.220054,MA0143.1;0.321346,MA0144.1;0.145658,MA0145.1;0.271624,MA0146.1;0.417053,MA0147.1;0.583957,MA0148.1;0.0749931,MA0149.1;0.00235143,MA0062.2;0.0449077,MA0035.2;0.00887784,MA0039.2;1.01854,MA0138.2;0.265104,MA0002.2;0.427879,MA0137.2;0.083082,MA0104.2;0.801269,MA0047.2;0.24661,MA0112.2;0.668196,MA0065.2;0.674474,MA0150.1;0.0210609,MA0151.1;0,MA0152.1;0.246802,MA0153.1;0.0932305,MA0154.1;0.0198481,MA0155.1;1.05122,MA0156.1;0.19038,MA0157.1;0.182619,MA0158.1;0,MA0159.1;0.14562,MA0160.1;0.147387,MA0161.1;0,MA0162.1;3.07027,MA0163.1;2.81909,MA0164.1;1.00998,MA0080.2;0.159702,MA0018.2;0.0142977,MA0099.2;0.0436505,MA0079.2;27.6429,MA0102.2;0.463274,MA0258.1;0.105535,MA0259.1;0.0360341,MA0442.1;0
}}

Latest revision as of 14:41, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:42298108..42298119,-p@chr10:42298108..42298119
-
Mm9::chr12:28020001..28020009,-p@chr12:28020001..28020009
-
Mm9::chr12:28020439..28020450,-p@chr12:28020439..28020450
-
Mm9::chr12:28020918..28020929,-p@chr12:28020918..28020929
-
Mm9::chr12:28021078..28021088,+p@chr12:28021078..28021088
+
Mm9::chr12:28021269..28021304,-p@chr12:28021269..28021304
-
Mm9::chr12:28021332..28021353,-p@chr12:28021332..28021353
-
Mm9::chr12:28021421..28021432,-p@chr12:28021421..28021432
-
Mm9::chr12:28021693..28021702,-p@chr12:28021693..28021702
-
Mm9::chr12:28021707..28021716,-p@chr12:28021707..28021716
-
Mm9::chr12:28021784..28021797,-p@chr12:28021784..28021797
-
Mm9::chr12:28021809..28021832,-p@chr12:28021809..28021832
-
Mm9::chr12:28021852..28021888,-p@chr12:28021852..28021888
-
Mm9::chr12:28021986..28022001,-p@chr12:28021986..28022001
-
Mm9::chr12:28022352..28022363,-p@chr12:28022352..28022363
-
Mm9::chr12:28022400..28022420,-p@chr12:28022400..28022420
-
Mm9::chr12:28022440..28022451,-p@chr12:28022440..28022451
-
Mm9::chr12:28022462..28022471,-p@chr12:28022462..28022471
-
Mm9::chr12:28022476..28022489,-p@chr12:28022476..28022489
-
Mm9::chr12:28023108..28023115,-p@chr12:28023108..28023115
-
Mm9::chr12:28024271..28024279,-p@chr12:28024271..28024279
-
Mm9::chr12:28025122..28025133,-p@chr12:28025122..28025133
-
Mm9::chr12:28025138..28025149,-p@chr12:28025138..28025149
-
Mm9::chr12:28025159..28025175,-p@chr12:28025159..28025175
-
Mm9::chr12:28025234..28025239,-p@chr12:28025234..28025239
-
Mm9::chr12:28025305..28025322,-p@chr12:28025305..28025322
-
Mm9::chr12:28025392..28025407,-p@chr12:28025392..28025407
-
Mm9::chr12:28025483..28025507,-p@chr12:28025483..28025507
-
Mm9::chr12:28025584..28025593,-p@chr12:28025584..28025593
-
Mm9::chr12:28025618..28025629,-p@chr12:28025618..28025629
-
Mm9::chr12:28025985..28025997,-p@chr12:28025985..28025997
-
Mm9::chr12:28026011..28026026,-p@chr12:28026011..28026026
-
Mm9::chr12:28026469..28026480,-p@chr12:28026469..28026480
-
Mm9::chr12:28026549..28026562,-p@chr12:28026549..28026562
-
Mm9::chr12:28027256..28027282,-p2@Sox11
Mm9::chr12:28027310..28027322,-p5@Sox11
Mm9::chr12:28027561..28027591,-p1@Sox11
Mm9::chr13:29042374..29042381,-p@chr13:29042374..29042381
-
Mm9::chr13:29042477..29042484,-p@chr13:29042477..29042484
-
Mm9::chr13:29043536..29043556,-p@chr13:29043536..29043556
-
Mm9::chr13:29044435..29044442,-p@chr13:29044435..29044442
-
Mm9::chr13:29044748..29044766,-p@chr13:29044748..29044766
-
Mm9::chr13:29044875..29044928,-p4@Sox4
Mm9::chr13:29045174..29045188,-p7@Sox4
Mm9::chr13:56353536..56353542,-p1@Neurog1
Mm9::chr13:77186666..77186679,-p7@Ankrd32
Mm9::chr13:83854849..83854860,+p@chr13:83854849..83854860
+
Mm9::chr13:83854861..83854872,+p@chr13:83854861..83854872
+
Mm9::chr13:83860895..83860914,+p3@ENSMUST00000131907
Mm9::chr13:83866774..83866792,-p@chr13:83866774..83866792
-
Mm9::chr13:83869062..83869073,+p@chr13:83869062..83869073
+
Mm9::chr13:83869080..83869099,+p@chr13:83869080..83869099
+
Mm9::chr13:83878789..83878794,+p2@ENSMUST00000052354
Mm9::chr13:84202713..84202716,+p@chr13:84202713..84202716
+
Mm9::chr13:84204390..84204413,-p2@uc007rin.1
Mm9::chr15:76352832..76352900,-p1@Scrt1
Mm9::chr15:76984032..76984041,-p15@Rbfox2
Mm9::chr15:78601331..78601355,-p@chr15:78601331..78601355
-
Mm9::chr15:84685500..84685514,-p6@Phf21b
Mm9::chr15:84685523..84685557,-p2@Phf21b
Mm9::chr15:84685560..84685575,-p5@Phf21b
Mm9::chr15:84686450..84686462,-p8@Phf21b
Mm9::chr16:45724713..45724732,-p3@Tagln3
Mm9::chr18:77803934..77803943,-p7@Rnf165
Mm9::chr18:77803981..77804009,-p5@Rnf165
Mm9::chr19:53907125..53907144,+p@chr19:53907125..53907144
+
Mm9::chr1:42752124..42752135,-p8@2610017I09Rik
Mm9::chr1:42752574..42752621,+p4@Pou3f3
Mm9::chr2:151906555..151906566,+p@chr2:151906555..151906566
+
Mm9::chr2:151906599..151906610,+p@chr2:151906599..151906610
+
Mm9::chr2:151906634..151906642,+p@chr2:151906634..151906642
+
Mm9::chr2:151906650..151906675,+p@chr2:151906650..151906675
+
Mm9::chr2:151906679..151906690,+p@chr2:151906679..151906690
+
Mm9::chr2:151906701..151906711,+p@chr2:151906701..151906711
+
Mm9::chr2:151906968..151906988,+p5@Scrt2
Mm9::chr2:151907110..151907126,+p6@Scrt2
Mm9::chr2:151919680..151919694,+p@chr2:151919680..151919694
+
Mm9::chr2:153270322..153270351,-p5@8430427H17Rik
Mm9::chr2:22477369..22477394,+p15@Gad2
Mm9::chr2:26766053..26766083,-p2@Med22
Mm9::chr2:38196588..38196600,+p4@Lhx2
Mm9::chr3:84108684..84108704,-p15@Trim2
Mm9::chr4:147504747..147504758,-p3@2610109H07Rik
p3@LOC100044686
Mm9::chr4:147504760..147504781,-p2@2610109H07Rik
p2@LOC100044686
Mm9::chr4:20705674..20705740,-p1@Nkain3
Mm9::chr4:22413826..22413832,-p@chr4:22413826..22413832
-
Mm9::chr4:22415600..22415616,-p3@Pou3f2
Mm9::chr4:33010492..33010505,-p5@Ankrd6
Mm9::chr4:34010820..34010831,+p@chr4:34010820..34010831
+
Mm9::chr4:54957886..54957907,+p3@Zfp462
Mm9::chr4:54958725..54958736,-p@chr4:54958725..54958736
-
Mm9::chr4:55022151..55022179,+p@chr4:55022151..55022179
+
Mm9::chr4:87678639..87678653,-p11@Mllt3
Mm9::chr5:111407675..111407695,+p@chr5:111407675..111407695
+
Mm9::chr5:111718223..111718234,+p@chr5:111718223..111718234
+
Mm9::chr5:111846145..111846158,-p@chr5:111846145..111846158
-
Mm9::chr5:111846160..111846179,-p@chr5:111846160..111846179
-
Mm9::chr5:111846283..111846326,+p1@Mn1
Mm9::chr5:111847671..111847682,+p@chr5:111847671..111847682
+
Mm9::chr5:111883934..111883938,+p@chr5:111883934..111883938
+
Mm9::chr5:112190717..112190747,-p1@ENSMUST00000129065
p1@ENSMUST00000129146
p1@ENSMUST00000137398
p1@uc008ysi.1
Mm9::chr5:115879594..115879622,+p2@Msi1
Mm9::chr5:122345353..122345358,-p5@Cux2
Mm9::chr5:132013629..132013661,-p15@Auts2
Mm9::chr5:24104540..24104584,-p7@Smarcd3
Mm9::chr5:24104722..24104736,-p9@Smarcd3
Mm9::chr5:24104737..24104747,-p13@Smarcd3
Mm9::chr5:24104751..24104773,-p5@Smarcd3
Mm9::chr5:99703670..99703683,+p@chr5:99703670..99703683
+
Mm9::chr6:13789895..13789908,-p3@Gpr85
Mm9::chr6:88824043..88824064,-p6@Podxl2
Mm9::chr6:97567621..97567636,-p19@Frmd4b
Mm9::chr7:106614531..106614542,+p1@Klhl35
Mm9::chr7:116318827..116318870,-p@chr7:116318827..116318870
-
Mm9::chr7:116318872..116318883,-p@chr7:116318872..116318883
-
Mm9::chr7:123177904..123177931,-p@chr7:123177904..123177931
-
Mm9::chr7:133416103..133416123,+p2@Sbk1
Mm9::chr7:133436921..133436927,+p@chr7:133436921..133436927
+
Mm9::chr7:28140718..28140748,-p3@Shkbp1
Mm9::chr7:29856616..29856632,+p1@ENSMUST00000153270
p1@uc009gaq.1
Mm9::chr8:11727945..11727967,+p9@Arhgef7
Mm9::chr8:127316961..127316970,+p4@Trim67
Mm9::chr8:29761642..29761646,-p@chr8:29761642..29761646
-
Mm9::chr8:48373484..48373514,-p@chr8:48373484..48373514
-
Mm9::chr8:73387648..73387664,-p1@Kcnn1
Mm9::chr9:41184981..41184991,+p@chr9:41184981..41184991
+
Mm9::chr9:41387595..41387606,-p@chr9:41387595..41387606
-
Mm9::chr9:41387629..41387646,-p@chr9:41387629..41387646
-
Mm9::chr9:41387743..41387752,+p@chr9:41387743..41387752
+
Mm9::chr9:58047493..58047509,-p@chr9:58047493..58047509
-
Mm9::chr9:58047568..58047579,-p@chr9:58047568..58047579
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006355regulation of transcription, DNA-dependent1.06955522168773e-05
GO:0006351transcription, DNA-dependent1.06955522168773e-05
GO:0032774RNA biosynthetic process1.06955522168773e-05
GO:0045449regulation of transcription1.15739381032375e-05
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process1.1867205629498e-05
GO:0006350transcription1.1867205629498e-05
GO:0010468regulation of gene expression1.57070854974608e-05
GO:0031323regulation of cellular metabolic process2.32376774256967e-05
GO:0019222regulation of metabolic process3.30989259478468e-05
GO:0016070RNA metabolic process4.17018828948098e-05
GO:0050794regulation of cellular process8.05939042937337e-05
GO:0050789regulation of biological process8.30519623796587e-05
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.000154209456836107
GO:0010467gene expression0.000288456481903389
GO:0065007biological regulation0.000506072611848329
GO:0003677DNA binding0.00376362238179168
GO:0043283biopolymer metabolic process0.00664035286554795
GO:0003700transcription factor activity0.00709432958641498
GO:0051098regulation of binding0.00928388962222668
GO:0003676nucleic acid binding0.0225851821885137
GO:0031536positive regulation of exit from mitosis0.0253407908040023
GO:0031017exocrine pancreas development0.0253407908040023
GO:0044451nucleoplasm part0.0273498646958529
GO:0005654nucleoplasm0.032149813537008
GO:0021985neurohypophysis development0.0371349305754187
GO:0004351glutamate decarboxylase activity0.0371349305754187
GO:0010458exit from mitosis0.0371349305754187
GO:0007096regulation of exit from mitosis0.0371349305754187
GO:0051100negative regulation of binding0.0371349305754187
GO:0043392negative regulation of DNA binding0.0371349305754187
GO:0031981nuclear lumen0.0463792531986173
GO:0001957intramembranous ossification0.0463792531986173
GO:0021854hypothalamus development0.0463792531986173
GO:0014002astrocyte development0.0463792531986173
GO:0016286small conductance calcium-activated potassium channel activity0.0463792531986173
GO:0021979hypothalamus cell differentiation0.0463792531986173



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.96639
MA0004.10.0264324
MA0006.10.22322
MA0007.10.0504158
MA0009.10.164014
MA0014.11.61275
MA0017.10.00145157
MA0019.10.285674
MA0024.10.130059
MA0025.10.131204
MA0027.11.31347
MA0028.10.258002
MA0029.10.820339
MA0030.11.21739
MA0031.10.23819
MA0038.10.615505
MA0040.11.07708
MA0041.10.816516
MA0042.10.195194
MA0043.10.0726685
MA0046.10.0526083
MA0048.11.05506
MA0050.10.443824
MA0051.10.0616002
MA0052.10.181425
MA0055.10.0226084
MA0056.10
MA0057.16.87922
MA0058.10.0310419
MA0059.10.130686
MA0060.10.317884
MA0061.10.207166
MA0063.10
MA0066.10.0153527
MA0067.10.191528
MA0068.10.679631
MA0069.10.0482348
MA0070.10.0455316
MA0071.10.177494
MA0072.10.16628
MA0073.117.8381
MA0074.10.0097596
MA0076.10.122944
MA0077.10.14881
MA0078.10.527092
MA0081.10.270012
MA0083.10.0723826
MA0084.10.421168
MA0087.10.210524
MA0088.10.202915
MA0089.10
MA0090.10.349743
MA0091.10.138293
MA0092.10.0155321
MA0093.10.0227854
MA0095.10
MA0098.10
MA0100.10.0762019
MA0101.10.824962
MA0103.10.0060688
MA0105.10.944776
MA0106.10.00531662
MA0107.11.15798
MA0108.20.162918
MA0109.10
MA0111.10.0194762
MA0113.10.288484
MA0114.10.0559041
MA0115.10.0736825
MA0116.10.313352
MA0117.10.486736
MA0119.10.0859712
MA0122.10.243798
MA0124.10.161302
MA0125.10.780103
MA0130.10
MA0131.10.0492137
MA0132.10
MA0133.10
MA0135.11.02251
MA0136.10.103537
MA0139.10.407494
MA0140.10.154442
MA0141.10.0474578
MA0142.10.220054
MA0143.10.321346
MA0144.10.145658
MA0145.10.271624
MA0146.10.417053
MA0147.10.583957
MA0148.10.0749931
MA0149.10.00235143
MA0062.20.0449077
MA0035.20.00887784
MA0039.21.01854
MA0138.20.265104
MA0002.20.427879
MA0137.20.083082
MA0104.20.801269
MA0047.20.24661
MA0112.20.668196
MA0065.20.674474
MA0150.10.0210609
MA0151.10
MA0152.10.246802
MA0153.10.0932305
MA0154.10.0198481
MA0155.11.05122
MA0156.10.19038
MA0157.10.182619
MA0158.10
MA0159.10.14562
MA0160.10.147387
MA0161.10
MA0162.13.07027
MA0163.12.81909
MA0164.11.00998
MA0080.20.159702
MA0018.20.0142977
MA0099.20.0436505
MA0079.227.6429
MA0102.20.463274
MA0258.10.105535
MA0259.10.0360341
MA0442.10
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