NonredundantMotifs:8: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;11.023056;3.306158;0.833466;70.843797!2;5.126488;6.994371;56.933463;16.952155!3;1.575346;0;0;84.431131!4;77.786275;6.577658;0.83564;0.806904!5;75.656821;0;10.349656;0!6;0;0.908504;0;85.097973!7;0;85.217965;0;0.788512!8;2.548872;82.654094;0;0.803511!9;8.519188;76.552727;0.934562;0!10;82.778273;0;0.785576;2.442628!11;22.505869;3.328835;60.171773;0 | |PWM=PO;A;C;G;T!1;11.023056;3.306158;0.833466;70.843797!2;5.126488;6.994371;56.933463;16.952155!3;1.575346;0;0;84.431131!4;77.786275;6.577658;0.83564;0.806904!5;75.656821;0;10.349656;0!6;0;0.908504;0;85.097973!7;0;85.217965;0;0.788512!8;2.548872;82.654094;0;0.803511!9;8.519188;76.552727;0.934562;0!10;82.778273;0;0.785576;2.442628!11;22.505869;3.328835;60.171773;0 | ||
|entrez_gene_id= | |entrez_gene_id=PITX1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq /UNIPROBE:Obox1_3970.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Pitx1_2312.1;CELL08~Otx2_3441.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Pitx3_3497.2;CELL08~Obox6_3440.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Obox5_3963.2;CELL08~Obox5_2284.1;CELL08~Dmbx1_2277.1;CELL08~Gsc_2327.3;CELL08~Dobox5_3493.1;CELL08 /HOCOMOCO:PRRX1_f1~OTX1_f1~PITX2_si~OTX2_si~CRX_si | |motif_cluster_2013_march_motif_members= /SWISSREGULON:CRX.p2~PITX1..3.p2 /HOMER:CRX_Retina-Crx-ChIP-Seq /UNIPROBE:Obox1_3970.2;CELL08~Tcf1_secondary;SCI09~Crx_3485.1;CELL08~Pitx1_2312.1;CELL08~Otx2_3441.1;CELL08~Pitx2_2274.3;CELL08~Otx1_2325.1;CELL08~Pitx3_3497.2;CELL08~Obox6_3440.2;CELL08~Obox2_3438.2;CELL08~Obox3_3439.1;CELL08~Obox5_3963.2;CELL08~Obox5_2284.1;CELL08~Dmbx1_2277.1;CELL08~Gsc_2327.3;CELL08~Dobox5_3493.1;CELL08 /HOCOMOCO:PRRX1_f1~OTX1_f1~PITX2_si~OTX2_si~CRX_si | ||
|name=known8 | |name=known8 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=PITX1..3.p2 | |representative_motif_id=PITX1..3.p2 | ||
|representative_motif_name= | |representative_motif_name=PITX1 | ||
|score=0.3171283104135989 | |score=0.3171283104135989 | ||
|uniprot_entry_name= | |uniprot_entry_name=PITX1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known8
- db :SWISSREGULON
- Id :PITX1..3.p2
- name :PITX1
- score :0.3171283104135989
- External refs:
- Internal refs:
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Sub Motif Members
