NonredundantMotifs:28: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;66.182994;8.551344;2.003484;282.864563999999!2;50.118493;1.767241;170.113212;137.60344!3;93.8878240000001;1.982836;79.616861;184.114865!4;0.561712;296.779055;0.731482;61.530137!5;155.456632;19.389437;177.790795;6.965522!6;1.257013;35.383744;317.793158999999;5.16847!7;0.445108;0;0;359.157278!8;0;0;0;359.602386 | |PWM=PO;A;C;G;T!1;66.182994;8.551344;2.003484;282.864563999999!2;50.118493;1.767241;170.113212;137.60344!3;93.8878240000001;1.982836;79.616861;184.114865!4;0.561712;296.779055;0.731482;61.530137!5;155.456632;19.389437;177.790795;6.965522!6;1.257013;35.383744;317.793158999999;5.16847!7;0.445108;0;0;359.157278!8;0;0;0;359.602386 | ||
|entrez_gene_id= | |entrez_gene_id=DMAP1_NCOR(1,2)_SMARC | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 | |motif_cluster_2013_march_motif_members= /JASPAR:MA0100.1;Myb /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 /HOCOMOCO:OVOL1_f1~MYB_f1 | ||
|name=known28 | |name=known28 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2 | |representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2 | ||
|representative_motif_name= | |representative_motif_name=DMAP1_NCOR(1,2)_SMARC | ||
|score=0.2074314320749557 | |score=0.2074314320749557 | ||
|uniprot_entry_name= | |uniprot_entry_name=DMAP1_NCOR(1,2)_SMARC | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known28
- db :SWISSREGULON
- Id :DMAP1_NCOR(1,2)_SMARC.p2
- name :DMAP1_NCOR(1,2)_SMARC
- score :0.2074314320749557
- External refs:
- Internal refs:
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Sub Motif Members
