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Revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant136
  • db :SWISSREGULON
  • Id :HMX1.p2
  • name :HMX1
  • score :0.12278249296235977
  • External refs:
EntrezGene:HMX1
UniProt:HMX1

  • Internal refs:
EntrezGene:HMX1


Motif matrix
POACGT
1094.3860663.9631310
297.36050700.988690
375.9223173.90460518.5222750
402.90939395.4398040
50.9866440097.362553
61.94271093.4921282.914359
714.70455368.9969777.7776526.870015
87.8470222.90861787.5935580
96.809656.8364160.98737983.715752
104.8885451.94535191.5153010

Sub Motif Members