User:Serkan/test0: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 60: | Line 60: | ||
{{TestTemplate|{{#var:motifscores}}|{{#var:categories}}|{{#var:motifids}}|,|Motif Scores, 2013|motifs}} | {{TestTemplate|{{#var:motifscores}}|{{#var:categories}}|{{#var:motifids}}|,|Motif Scores, 2013|motifs}} | ||
{{#vardefine:samples| | |||
{{#ask:[[Concept:FF_samples_withname]][[Sample_species::Human (Homo sapiens)]] | |||
|?Sample category | |||
|format=array | |||
|offset=0 | |||
|limit= | |||
|mainlabel=- | |||
|sort= | |||
|order= | |||
|link=none | |||
|headers=hide | |||
|titles=show | |||
|hidegaps=none | |||
|sep=, | |||
|propsep=<PROP> | |||
|manysep=<MANY> | |||
|recordsep=<RCRD> | |||
|headersep= | |||
}} | |||
}} | |||
{{PieChart|data={{#var:samples}} | |||
|delimiter=, | |||
|chartTitle=Samples General View | |||
|seriesName=category | |||
|chartSize=300 | |||
|renderTo=container | |||
|percentageDecimals=1 | |||
}} | |||
Revision as of 14:59, 13 June 2013
GRAPH
| Name: | {{{name}}} | ||
|---|---|---|---|
| Namespace: | {{{namespace}}} | ||
| Definition: | {{{def}}} | ||
| Xrefs: |
| ||
| Synonyms: | {{{synonym}}} | ||
| Comments: | {{{comment}}} | ||
| Alt_id: | {{{alt_id}}} | ||
| Subset: | {{{subset}}} | ||
| Created by: | {{{created_by}}} | ||
| Creation date: | {{{obo_creation_date}}} | ||
| Has quality: | {{{has_quality}}} |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
NA
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} ({{{name}}}), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
"{{{obo_creation_date}}}" contains an extrinsic dash or other characters that are invalid for a date interpretation.
Property "Property value" (as page type) with input value "{{{property_value}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
