FFCP PHASE1:Hg19::chr1:12185978..12185991,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=943|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11923|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000479933_5end|coexpression_cluster_id=C3806|description=CAGE_peak_9_at_TNFRSF8_5end|id=chr1:12185978..12185991,+|ontology_enrichment_celltype=CL:0002057!1.39e-76!42;CL:0000860!1.46e-70!45;CL:0000766!1.19e-64!76;CL:0002194!1.67e-58!63;CL:0000576!1.67e-58!63;CL:0000040!1.67e-58!63;CL:0000559!1.67e-58!63;CL:0002009!2.79e-56!65;CL:0000839!2.82e-51!70;CL:0000557!2.33e-50!71;CL:0000763!2.59e-42!112;CL:0000049!2.59e-42!112;CL:0000738!3.31e-39!140;CL:0002087!2.34e-34!119;CL:0000037!6.33e-30!172;CL:0000566!6.33e-30!172;CL:0002032!4.15e-28!165;CL:0000837!4.15e-28!165;CL:0002031!4.90e-28!124;CL:0000988!2.56e-27!182;CL:0002393!7.84e-15!9;CL:0002397!7.84e-15!9;CL:0000094!7.39e-13!8;CL:0000081!5.60e-09!11;CL:0000875!7.03e-08!3;CL:0002396!7.03e-08!3;CL:0000775!1.59e-07!3|ontology_enrichment_celltype_v019=CL:0000860;2.06e-60;33!CL:0002057;2.06e-60;33!CL:0000473;5.31e-47;39!CL:0000234;5.31e-47;39!CL:0000576;2.21e-45;48!CL:0000766;1.28e-34;69!CL:0000094;1.52e-19;8!CL:0000763;1.69e-15;100!CL:0000875;6.42e-15;3!CL:0002396;6.42e-15;3!CL:0000775;3.84e-14;3!CL:0000081;4.74e-14;11!CL:0000738;1.45e-11;136!CL:0000771;4.69e-10;2!CL:0002087;1.22e-09;104!CL:0002393;1.65e-07;6!CL:0002397;1.65e-07;6|ontology_enrichment_celltype_v019_2=CL:0000860,9.21e-83,42;CL:0002057,9.21e-83,42;CL:0000473,7.95e-77,48;CL:0000234,7.95e-77,48;CL:0000766,1.51e-71,72;CL:0002194,4.58e-60,59;CL:0000576,4.58e-60,59;CL:0000040,4.58e-60,59;CL:0000559,4.58e-60,59;CL:0002009,6.67e-58,61;CL:0000839,4.64e-53,66;CL:0000557,3.55e-52,67;CL:0000763,2.52e-45,108;CL:0000049,2.52e-45,108;CL:0000738,1.21e-36,136;CL:0002087,8.55e-30,115;CL:0000037,3.49e-28,168;CL:0002032,6.54e-28,161;CL:0000837,6.54e-28,161;CL:0000988,2.37e-26,177;CL:0002031,2.94e-26,120;CL:0000094,1.29e-19,8;CL:0002393,2.59e-18,9;CL:0002397,2.59e-18,9;CL:0000875,5.87e-15,3;CL:0002396,5.87e-15,3;CL:0000775,3.29e-14,3;CL:0000081,4.23e-14,11;CL:0000771,3.66e-10,2;CL:0000134,3.38e-09,354;CL:0002320,7.26e-09,361;CL:0000219,1.07e-07,386|ontology_enrichment_development_v019=CL:0002057;3.07e-56;42!CL:0000049;5.78e-17;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!2.96e-58!102;UBERON:0003061!2.96e-58!102;UBERON:0002193!2.42e-55!112;UBERON:0002371!3.89e-43!80;UBERON:0001474!3.68e-39!86;UBERON:0002405!7.64e-33!115;UBERON:0004765!2.69e-31!101;UBERON:0001434!2.69e-31!101;UBERON:0003081!3.56e-22!216;UBERON:0002204!2.20e-15!167;UBERON:0000178!1.20e-14!15;UBERON:0000179!1.20e-14!15;UBERON:0000463!1.20e-14!15;UBERON:0007023!8.51e-11!115|ontology_enrichment_uberon_v019=UBERON:0000178;2.94e-17;15!UBERON:0000179;2.94e-17;15!UBERON:0000463;2.94e-17;15!UBERON:0002390;2.82e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.09e-56,98;UBERON:0003061,1.09e-56,98;UBERON:0002193,9.45e-51,108;UBERON:0002371,2.93e-45,76;UBERON:0001474,1.75e-41,82;UBERON:0004765,3.21e-37,90;UBERON:0002405,8.27e-36,93;UBERON:0001434,7.66e-33,100;UBERON:0003081,2.47e-23,203;UBERON:0000178,3.56e-17,15;UBERON:0000179,3.56e-17,15;UBERON:0000463,3.56e-17,15;UBERON:0002204,5.71e-17,167;UBERON:0000926,3.67e-12,315;UBERON:0004120,3.67e-12,315;UBERON:0006603,3.67e-12,315;UBERON:0002384,2.06e-08,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.77408061658038,0,0,0,0,0,0,0,0.601633342410425,0.217010870715852,0.447830948479849,0,0.77272670290256,6.83371722263954,6.42389104270976,6.0646015296954,2.78914844286822,0.822335776043652,2.47765096716083,1.1507695692886,1.0246428261164,0.47296445977717,1.72372840368309,1.93645405075148,4.06279459783025,6.77672422353377,4.09359225086769,3.14612878223118,3.36692281607993,3.53021929783703,0.639337125799041,0.989553900560148,0.797854630486527,1.27867425159808,0.870627715885752,1.13477044938228,1.24564449799115,1.7587406567972,1.5644487552606,0.868755378820466,0.605399502633369,0.736555271975129,0.632924774881769,4.43636101255078,3.61427309940574,3.14487968262564,1.68492946719743,1.50176892841506,1.12507910687956,4.84521664360123,5.17183360717634,4.38393969035121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00902836572851,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,2.24702107184155,2.99161459204025,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=943 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11923 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000479933_5end | |||
|coexpression_cluster_id=C3806 | |||
|description=CAGE_peak_9_at_TNFRSF8_5end | |||
|id=chr1:12185978..12185991,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.39e-76!42;CL:0000860!1.46e-70!45;CL:0000766!1.19e-64!76;CL:0002194!1.67e-58!63;CL:0000576!1.67e-58!63;CL:0000040!1.67e-58!63;CL:0000559!1.67e-58!63;CL:0002009!2.79e-56!65;CL:0000839!2.82e-51!70;CL:0000557!2.33e-50!71;CL:0000763!2.59e-42!112;CL:0000049!2.59e-42!112;CL:0000738!3.31e-39!140;CL:0002087!2.34e-34!119;CL:0000037!6.33e-30!172;CL:0000566!6.33e-30!172;CL:0002032!4.15e-28!165;CL:0000837!4.15e-28!165;CL:0002031!4.90e-28!124;CL:0000988!2.56e-27!182;CL:0002393!7.84e-15!9;CL:0002397!7.84e-15!9;CL:0000094!7.39e-13!8;CL:0000081!5.60e-09!11;CL:0000875!7.03e-08!3;CL:0002396!7.03e-08!3;CL:0000775!1.59e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.06e-60;33!CL:0002057;2.06e-60;33!CL:0000473;5.31e-47;39!CL:0000234;5.31e-47;39!CL:0000576;2.21e-45;48!CL:0000766;1.28e-34;69!CL:0000094;1.52e-19;8!CL:0000763;1.69e-15;100!CL:0000875;6.42e-15;3!CL:0002396;6.42e-15;3!CL:0000775;3.84e-14;3!CL:0000081;4.74e-14;11!CL:0000738;1.45e-11;136!CL:0000771;4.69e-10;2!CL:0002087;1.22e-09;104!CL:0002393;1.65e-07;6!CL:0002397;1.65e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.21e-83,42;CL:0002057,9.21e-83,42;CL:0000473,7.95e-77,48;CL:0000234,7.95e-77,48;CL:0000766,1.51e-71,72;CL:0002194,4.58e-60,59;CL:0000576,4.58e-60,59;CL:0000040,4.58e-60,59;CL:0000559,4.58e-60,59;CL:0002009,6.67e-58,61;CL:0000839,4.64e-53,66;CL:0000557,3.55e-52,67;CL:0000763,2.52e-45,108;CL:0000049,2.52e-45,108;CL:0000738,1.21e-36,136;CL:0002087,8.55e-30,115;CL:0000037,3.49e-28,168;CL:0002032,6.54e-28,161;CL:0000837,6.54e-28,161;CL:0000988,2.37e-26,177;CL:0002031,2.94e-26,120;CL:0000094,1.29e-19,8;CL:0002393,2.59e-18,9;CL:0002397,2.59e-18,9;CL:0000875,5.87e-15,3;CL:0002396,5.87e-15,3;CL:0000775,3.29e-14,3;CL:0000081,4.23e-14,11;CL:0000771,3.66e-10,2;CL:0000134,3.38e-09,354;CL:0002320,7.26e-09,361;CL:0000219,1.07e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;3.07e-56;42!CL:0000049;5.78e-17;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.96e-58!102;UBERON:0003061!2.96e-58!102;UBERON:0002193!2.42e-55!112;UBERON:0002371!3.89e-43!80;UBERON:0001474!3.68e-39!86;UBERON:0002405!7.64e-33!115;UBERON:0004765!2.69e-31!101;UBERON:0001434!2.69e-31!101;UBERON:0003081!3.56e-22!216;UBERON:0002204!2.20e-15!167;UBERON:0000178!1.20e-14!15;UBERON:0000179!1.20e-14!15;UBERON:0000463!1.20e-14!15;UBERON:0007023!8.51e-11!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.94e-17;15!UBERON:0000179;2.94e-17;15!UBERON:0000463;2.94e-17;15!UBERON:0002390;2.82e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.09e-56,98;UBERON:0003061,1.09e-56,98;UBERON:0002193,9.45e-51,108;UBERON:0002371,2.93e-45,76;UBERON:0001474,1.75e-41,82;UBERON:0004765,3.21e-37,90;UBERON:0002405,8.27e-36,93;UBERON:0001434,7.66e-33,100;UBERON:0003081,2.47e-23,203;UBERON:0000178,3.56e-17,15;UBERON:0000179,3.56e-17,15;UBERON:0000463,3.56e-17,15;UBERON:0002204,5.71e-17,167;UBERON:0000926,3.67e-12,315;UBERON:0004120,3.67e-12,315;UBERON:0006603,3.67e-12,315;UBERON:0002384,2.06e-08,371 | |||
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|short_description=p9@TNFRSF8 | |||
}} |
Revision as of 23:52, 11 September 2013
Short description: | p9@TNFRSF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_TNFRSF8_5end |
Coexpression cluster: | C3806_CD14_Eosinophils_CD14CD16_Neutrophils_Whole_lymph_Basophils |
Association with transcript: | 0bp_to_ENST00000479933_5end |
EntrezGene: | TNFRSF8 |
HGNC: | 11923 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.09e-56 | 98 |
blood island | 1.09e-56 | 98 |
hemolymphoid system | 9.45e-51 | 108 |
bone marrow | 2.93e-45 | 76 |
bone element | 1.75e-41 | 82 |
skeletal element | 3.21e-37 | 90 |
immune system | 8.27e-36 | 93 |
skeletal system | 7.66e-33 | 100 |
lateral plate mesoderm | 2.47e-23 | 203 |
blood | 3.56e-17 | 15 |
haemolymphatic fluid | 3.56e-17 | 15 |
organism substance | 3.56e-17 | 15 |
musculoskeletal system | 5.71e-17 | 167 |
mesoderm | 3.67e-12 | 315 |
mesoderm-derived structure | 3.67e-12 | 315 |
presumptive mesoderm | 3.67e-12 | 315 |
connective tissue | 2.06e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.