FFCP PHASE1:Hg19::chr1:12679956..12679993,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C928|description=CAGE_peak_at_chr1:12679956..12679993,-|id=chr1:12679956..12679993,-|ontology_enrichment_celltype=CL:0000183!5.00e-10!59;CL:0000187!1.48e-09!54;CL:0000680!3.59e-09!57;CL:0000056!3.59e-09!57;CL:0000355!3.59e-09!57;CL:0000359!4.49e-09!32;CL:0000192!5.94e-09!42;CL:0000514!5.94e-09!42;CL:0000136!2.37e-08!15;CL:0000393!4.92e-08!60;CL:0000211!4.92e-08!60|ontology_enrichment_celltype_v019=CL:0000136;2.14e-10;13!CL:0000359;4.05e-09;32|ontology_enrichment_celltype_v019_2=CL:0000136,6.35e-11,15;CL:0000359,2.11e-09,32;CL:0000187,1.73e-08,55;CL:0000192,8.38e-08,43;CL:0000514,8.38e-08,43;CL:0000680,1.60e-07,58;CL:0000056,1.60e-07,58;CL:0000355,1.60e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!1.74e-14!365;UBERON:0000481!7.68e-14!347;UBERON:0000477!1.82e-13!286;UBERON:0004111!2.40e-13!241;UBERON:0000119!8.47e-13!312;UBERON:0000483!9.72e-13!309;UBERON:0007023!1.89e-12!115;UBERON:0000025!4.49e-11!194;UBERON:0002385!4.93e-10!63;UBERON:0001015!4.93e-10!63;UBERON:0000383!4.93e-10!63;UBERON:0001134!1.54e-09!61;UBERON:0002036!1.54e-09!61;UBERON:0003082!1.54e-09!61;UBERON:0002100!1.58e-08!216;UBERON:0001637!3.86e-08!42;UBERON:0003509!3.86e-08!42;UBERON:0004572!3.86e-08!42;UBERON:0005256!5.74e-08!143;UBERON:0000468!5.95e-08!659;UBERON:0000490!2.11e-07!138;UBERON:0004573!2.90e-07!33;UBERON:0004571!2.90e-07!33;UBERON:0003914!3.87e-07!118;UBERON:0002346!4.68e-07!90;UBERON:0004122!6.07e-07!15|ontology_enrichment_uberon_v019=UBERON:0004573;3.62e-08;33!UBERON:0004571;3.62e-08;33!UBERON:0007625;9.13e-08;11|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.71e-10,309;UBERON:0000483,2.20e-10,306;UBERON:0004111,3.45e-10,240;UBERON:0002100,6.51e-10,199;UBERON:0004573,3.20e-09,33;UBERON:0004571,3.20e-09,33;UBERON:0003104,4.66e-09,160;UBERON:0009142,4.66e-09,160;UBERON:0002385,7.97e-09,64;UBERON:0001015,7.97e-09,64;UBERON:0000383,7.97e-09,64;UBERON:0001637,1.25e-08,42;UBERON:0003509,1.25e-08,42;UBERON:0004572,1.25e-08,42;UBERON:0005256,2.00e-08,122;UBERON:0004122,2.00e-08,15;UBERON:0007023,2.96e-08,114;UBERON:0001134,3.13e-08,62;UBERON:0002036,3.13e-08,62;UBERON:0003082,3.13e-08,62;UBERON:0001046,4.02e-08,19;UBERON:0000025,6.72e-08,192;UBERON:0000162,7.49e-08,14;UBERON:0001353,7.49e-08,14;UBERON:0000163,7.49e-08,14;UBERON:0006866,7.49e-08,14;UBERON:0000164,7.49e-08,14;UBERON:0000931,7.49e-08,14;UBERON:0007625,7.87e-08,11;UBERON:0003064,1.28e-07,28|phase1_expression=1.09007027562334,2.14100523890983,4.93340414335899,2.00146596706261,5.36353313312745,6.97870819280295,5.06599756336621,1.89515962028049,9.40268261519419,1.96587149201207,1.39560233594486,0,0,0.495065411840187,1.98838425436749,0.672325146451775,1.20538905604795,1.46062018077475,1.46379839637152,9.84968464614303,7.75202626728161,16.2996455168606,3.14859585844162,0.547497700291537,0.376627918784408,0.0764134057479513,0.164201178899891,0.236132343941038,0,0,0.154816123316076,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0.77272670290256,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0.164437904603676,0.829050053357545,0.579606171470105,0,0.802622484269139,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0.403213486449465,0,0,0,14.0847180537764,15.9828202304413,1.44575660953827,1.00267582127178,2.89693037921647,0,3.40644409211845,4.72674085820339,5.76496433402666,5.18225235589444,1.0478326039817,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0.838998872419812,0.275118041940067,0.417989933073621,1.03366703667732,0,0,0.805658634218294,0,0,0,1.62028389576352,0.17859945656816,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0.496971951695318,0.633152558322899,3.04541115870403,2.58152958673932,2.83734705758686,2.24271040056923,4.2699598291882,1.2333377420858,0.311211035399766,0.67355336034844,0,0.454072282934794,0.576175924479999,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0.206651562351531,0,0.247266929278557,0,0.718618141816238,0,0,0,0.438977620880838,3.0648779579902,1.05166641234618,0.340296549480063,0.179389635688862,1.92201649936711,1.69545520927649,0.600182192168805,0.721367704669072,2.31876486041066,1.11670113798954,0.168776332241266,1.36411807225678,0.504867548488229,3.40584624976508,7.92065678412178,1.06502877754984,0.201504196455281,0,0,0,0,0.975789649036763,1.06023814657188,0.464775771478074,0.414644220061482,0.756962552626885,0.72995471815166,0,0.643240938192885,0,4.17931135228781,4.33127689001751,0.236613600079688,0,0.241011029883482,0,0.217879444092406,0.237270619111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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C928 | |||
|description=CAGE_peak_at_chr1:12679956..12679993,- | |||
|id=chr1:12679956..12679993,- | |||
|ontology_enrichment_celltype=CL:0000183!5.00e-10!59;CL:0000187!1.48e-09!54;CL:0000680!3.59e-09!57;CL:0000056!3.59e-09!57;CL:0000355!3.59e-09!57;CL:0000359!4.49e-09!32;CL:0000192!5.94e-09!42;CL:0000514!5.94e-09!42;CL:0000136!2.37e-08!15;CL:0000393!4.92e-08!60;CL:0000211!4.92e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.14e-10;13!CL:0000359;4.05e-09;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.35e-11,15;CL:0000359,2.11e-09,32;CL:0000187,1.73e-08,55;CL:0000192,8.38e-08,43;CL:0000514,8.38e-08,43;CL:0000680,1.60e-07,58;CL:0000056,1.60e-07,58;CL:0000355,1.60e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.74e-14!365;UBERON:0000481!7.68e-14!347;UBERON:0000477!1.82e-13!286;UBERON:0004111!2.40e-13!241;UBERON:0000119!8.47e-13!312;UBERON:0000483!9.72e-13!309;UBERON:0007023!1.89e-12!115;UBERON:0000025!4.49e-11!194;UBERON:0002385!4.93e-10!63;UBERON:0001015!4.93e-10!63;UBERON:0000383!4.93e-10!63;UBERON:0001134!1.54e-09!61;UBERON:0002036!1.54e-09!61;UBERON:0003082!1.54e-09!61;UBERON:0002100!1.58e-08!216;UBERON:0001637!3.86e-08!42;UBERON:0003509!3.86e-08!42;UBERON:0004572!3.86e-08!42;UBERON:0005256!5.74e-08!143;UBERON:0000468!5.95e-08!659;UBERON:0000490!2.11e-07!138;UBERON:0004573!2.90e-07!33;UBERON:0004571!2.90e-07!33;UBERON:0003914!3.87e-07!118;UBERON:0002346!4.68e-07!90;UBERON:0004122!6.07e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.62e-08;33!UBERON:0004571;3.62e-08;33!UBERON:0007625;9.13e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.71e-10,309;UBERON:0000483,2.20e-10,306;UBERON:0004111,3.45e-10,240;UBERON:0002100,6.51e-10,199;UBERON:0004573,3.20e-09,33;UBERON:0004571,3.20e-09,33;UBERON:0003104,4.66e-09,160;UBERON:0009142,4.66e-09,160;UBERON:0002385,7.97e-09,64;UBERON:0001015,7.97e-09,64;UBERON:0000383,7.97e-09,64;UBERON:0001637,1.25e-08,42;UBERON:0003509,1.25e-08,42;UBERON:0004572,1.25e-08,42;UBERON:0005256,2.00e-08,122;UBERON:0004122,2.00e-08,15;UBERON:0007023,2.96e-08,114;UBERON:0001134,3.13e-08,62;UBERON:0002036,3.13e-08,62;UBERON:0003082,3.13e-08,62;UBERON:0001046,4.02e-08,19;UBERON:0000025,6.72e-08,192;UBERON:0000162,7.49e-08,14;UBERON:0001353,7.49e-08,14;UBERON:0000163,7.49e-08,14;UBERON:0006866,7.49e-08,14;UBERON:0000164,7.49e-08,14;UBERON:0000931,7.49e-08,14;UBERON:0007625,7.87e-08,11;UBERON:0003064,1.28e-07,28 | |||
|phase1_expression=1.09007027562334,2.14100523890983,4.93340414335899,2.00146596706261,5.36353313312745,6.97870819280295,5.06599756336621,1.89515962028049,9.40268261519419,1.96587149201207,1.39560233594486,0,0,0.495065411840187,1.98838425436749,0.672325146451775,1.20538905604795,1.46062018077475,1.46379839637152,9.84968464614303,7.75202626728161,16.2996455168606,3.14859585844162,0.547497700291537,0.376627918784408,0.0764134057479513,0.164201178899891,0.236132343941038,0,0,0.154816123316076,0,0,0,0,0,0,0,0.601633342410425,0,0,0,0.77272670290256,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0.393010762749165,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0.164437904603676,0.829050053357545,0.579606171470105,0,0.802622484269139,0,0,0,0,0.253019692019503,0,0,0,0.150575119077773,0.127986611154418,0,0,0,0.403213486449465,0,0,0,14.0847180537764,15.9828202304413,1.44575660953827,1.00267582127178,2.89693037921647,0,3.40644409211845,4.72674085820339,5.76496433402666,5.18225235589444,1.0478326039817,0,0,0.324547393654683,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0.838998872419812,0.275118041940067,0.417989933073621,1.03366703667732,0,0,0.805658634218294,0,0,0,1.62028389576352,0.17859945656816,0,0.225222960966644,0,0,0.366403487860815,0,0,0,0.496971951695318,0.633152558322899,3.04541115870403,2.58152958673932,2.83734705758686,2.24271040056923,4.2699598291882,1.2333377420858,0.311211035399766,0.67355336034844,0,0.454072282934794,0.576175924479999,0.234321431833797,0,0,0,0,0,0.140450806702248,0,0,0.206651562351531,0,0.247266929278557,0,0.718618141816238,0,0,0,0.438977620880838,3.0648779579902,1.05166641234618,0.340296549480063,0.179389635688862,1.92201649936711,1.69545520927649,0.600182192168805,0.721367704669072,2.31876486041066,1.11670113798954,0.168776332241266,1.36411807225678,0.504867548488229,3.40584624976508,7.92065678412178,1.06502877754984,0.201504196455281,0,0,0,0,0.975789649036763,1.06023814657188,0.464775771478074,0.414644220061482,0.756962552626885,0.72995471815166,0,0.643240938192885,0,4.17931135228781,4.33127689001751,0.236613600079688,0,0.241011029883482,0,0.217879444092406,0.237270619111097,0,0,0,0,0,1.2347220339942,2.94017422771084,1.26755034821831,1.96565443335525,0,0,0.860919069801795,6.51957679134397,0,0,0,0,0,0,5.77325368101093,1.507095264676,10.4493737869881,0.288732895522148,0,0,0,0,0.492434012174795,0,0.148631162288728,0,0,0,0.0895585227028483,0,0.383382679165211,0.492663237895943,0.616339038092582,0,0,0,0,0,0,0,0,0,0.285826432630578,0.224262168690721,17.4384027533312,0,3.23179289394444,7.15312891703765,0,1.32969058292435,1.04007436911366,0.514414748524284,0,0,0.57191197463259,1.08524321078289,0,0,0,0,4.82303003295338,6.10073421020206,4.39881161201051,0,0,0,0,0,0,0.289562613335158,0.61642896765115,0.179060963239896,0.224170287987055,0,0,0,0,0,0,0,0,0,0,0,1.96306386750624,6.00204625271613,0.271265023699736,8.52680532276309,0.356857977594324,2.36553622550902,2.22568688486155,0.601892199455438,0,1.03473071292505,0,0.184369168541703,0,0.391602314925481,1.02943027143257,0.620304078368662,0.431428401637234,0.213455115606889,0,0,0.604780586659361,1.24053903909388,0.460385919864187,0.280660094433074,4.48487022394953,1.02341449813341,0.160853921143607,2.96836132889982,0.154209693802656,0.887808626565635,0.821271560138091,0.519254429183621,0.464841513839837,1.0877350463246,2.00506470303285,1.10497186723076,4.59257792658427,1.82091168006717,12.8501926660236,0.902399225814824,0.924184045252977,3.92174884588428,1.46139224653261,1.68882606228601,0,0,0.431831832204279,0,9.212178876491,21.5726602757587,0.509752546090077,0,3.58199607555485,0.219259876645935,0,6.66770325302612,14.1046297650873,4.22991913063594,0.9273691048295,1.00726411300178,0.41254749960294,0,0,3.21367859688319,1.45006077438183,0.616194468458578,0.15350367472613,0.137836572484531,3.11518710117994,2.0302337147992,0.426133137080504,9.34836374290742,0.165284915360978,0,0.127612712494584,0.10115778085555,3.71876439437829,2.51849877464512,1.3940745403212,3.08033580176089,2.12922412126809,5.21959795245044,2.96518750566272,5.29562080945368,0.372158369359667,0.632758849437452,1.14378116354295,0.255897791311334,0.855877976067841,4.45484547096312,6.27958912159384,0.899362287916574,1.09814811894422,0.117812402345686,2.62837226045311,0,2.10629228119491,0.48763373908959,4.14312932373184,8.45201174054043,4.91399681068749,8.20151505331534,7.910568163417,11.0273068709225,3.98063385144732,2.19225442626881,0.578775534266688,0,2.02910376962704,0.6196469961995,2.81695602532241,0.717056761020258,0.196498082026242,1.426684205925,1.06428319221179,8.86652068250189,12.8425008254362,0,0,0,0,1.08890984861323,0.847294206991012,0,0,0,0,0.507447609232169,0.764637207142375,0.569647187174163,1.42939065274673,0.411362273086194,0.648473311192717,0,0,0,0,3.43056302373444,0,0,0,0,0,0.191505370132367,0,0.97386582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.870866991587845,0.684466602170562,0.606168477131288,2.7254438049217,2.99394320891412,4.8027928480475,2.56145630106517,0,4.22178449900958,0,3.05603610457166,2.44137706989443,8.65483806441166,7.44713036286797,0 | |||
|short_description=p@chr1:12679956..12679993,- | |||
}} |
Revision as of 23:56, 11 September 2013
Short description: | p@chr1:12679956..12679993, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:12679956..12679993, - |
Coexpression cluster: | C928_Retinal_Cardiac_mesothelioma_Renal_Meningeal_Smooth_Astrocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.35e-11 | 15 |
vascular associated smooth muscle cell | 2.11e-09 | 32 |
muscle cell | 1.73e-08 | 55 |
smooth muscle cell | 8.38e-08 | 43 |
smooth muscle myoblast | 8.38e-08 | 43 |
muscle precursor cell | 1.60e-07 | 58 |
myoblast | 1.60e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.60e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.71e-10 | 309 |
epithelium | 2.20e-10 | 306 |
anatomical conduit | 3.45e-10 | 240 |
trunk | 6.51e-10 | 199 |
systemic artery | 3.20e-09 | 33 |
systemic arterial system | 3.20e-09 | 33 |
mesenchyme | 4.66e-09 | 160 |
entire embryonic mesenchyme | 4.66e-09 | 160 |
muscle tissue | 7.97e-09 | 64 |
musculature | 7.97e-09 | 64 |
musculature of body | 7.97e-09 | 64 |
artery | 1.25e-08 | 42 |
arterial blood vessel | 1.25e-08 | 42 |
arterial system | 1.25e-08 | 42 |
trunk mesenchyme | 2.00e-08 | 122 |
genitourinary system | 2.00e-08 | 15 |
adult organism | 2.96e-08 | 114 |
skeletal muscle tissue | 3.13e-08 | 62 |
striated muscle tissue | 3.13e-08 | 62 |
myotome | 3.13e-08 | 62 |
hindgut | 4.02e-08 | 19 |
tube | 6.72e-08 | 192 |
cloaca | 7.49e-08 | 14 |
anal region | 7.49e-08 | 14 |
embryonic cloaca | 7.49e-08 | 14 |
terminal part of digestive tract | 7.49e-08 | 14 |
primitive urogenital sinus | 7.49e-08 | 14 |
proctodeum | 7.49e-08 | 14 |
pigment epithelium of eye | 7.87e-08 | 11 |
intermediate mesoderm | 1.28e-07 | 28 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.